Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012426

Orthogroup ID

OG0001044

Physical Location & Seq

Genomic Coordinates Forward (+)

139289 .. 140866

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12426g00260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCCTTCCAAGGAGGATGGGCAATGAGGGGGTATGTTCGGATTCATCCATTTCAAGCACATAGAAATCCGCCGGAAAGACTAAGCATTAGATCTATCGGCCAATTGGATAATAACACCATCATTTTTCAATTTATTGATGCACCTAAATCTAACATGGCAGATTCAAAACGAGTATTACCAATGACACATGGAATTGTAAAACTACCCGGATCCTTGCATTTAGGGGGTAGTTTTCTTTGCAAGATGGCGGAGACGTTTTCACCCACTTTGACAACCTCCTTGGTCGAAATCTTCCTCTTATTAGTGCAAAGTTCTTTCAAGAACTTGATTGACTTGAACTTTCCGAAACGTCTCAAGAATGTCCTTTTCGGCACATTCGAAGGAAAAACATTAGTAGGAATTGAACTTAACACGTTTTTACCTTTATTGGACAGATTGGGTGATTTAGGGCCACTAGAAACTTGCGACAAAGGGGGATCCTCCTTTGCCCCTCTTTGTGACCTGTTTTTGATGAAGAACTTGCCCCCACTTCTTTTCCGCTTCTCAACACTATGGCTTTGGCCGATTCGAATCCACCCTTCGGATTCACTTGCGTTGAACTTGCCATTTGTCCCACTTGTCTCTTCAAATCCGTCACTTCTCGAGCTTGATTTTGTACCTCATTGGCATAATTTTGCATGTCCTTGGCTTAACTTGAGAATTATCAAAAGACGAACCTCAGTTGTTTTGGGACGATGGTGGTTGGTTAGATTGGTATGGCCGTGGGAACCCAGGGGGGTTTTGTTGAAATCCCCTTTGTGGTGCAGATTGTTGGGGCTCTCTCCACTTGAAATTAGGGTGATCTCTCCATCCGGGGTTGTAGGTTTTGGAGTATCGATCATGTTTAGGTTGGTTTTGGCCTTGGAAACCTATGGCATTGGCAGATTCCCATCCTCCATTCTCTATCAACTGAGGGCATGTCTCGGATGGATGCCCTTTGTGATTGAATATCAGAAATTGCACTTACCTCATTCACACTTTGTTGTCGTGGGCCCTCTCTTTGTCCAACACCTTCATATTGTTGAGCGTTGTGTGCTCGGTTGGCAATTAGAGCTTTGGCATCCACTAGAGTCTTGTCCACTAATGCGCCACCCGCCGAAGCATCTAGCATTTGACGTTCCATGGGAAGGAGTCCCTCGTAGAAATATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

45.44

Weight (kDa)

9.55

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001044)

Species	Orthologous Gene IDs
malus_domestica	MD00G1199800.v1.1 MD12G1009800.v1.1
pyrus_communis	pycom01g00360 pycom01g00370 pycom01g01360 pycom01g01490 pycom01g01720 pycom01g01940 pycom01g03060 pycom01g03070 pycom01g03730 pycom01g04350 pycom04g07860 pycom1128g00090 pycom11g16010 pycom12409g00010 pycom12420g00090 pycom12424g00140 pycom12426g00050 pycom12426g00220 pycom12426g00260 pycom12426g00340 pycom12426g00380 pycom12426g00390 pycom12426g00590 pycom12480g00050 pycom12529g00020 pycom12561g00060 pycom1256g00150 pycom1256g00260 pycom12659g00120 pycom12661g00140 pycom12g09700 pycom1341g00110 pycom13g24360 pycom13g25370 pycom13g25380 pycom13g25420 pycom13g25460 pycom13g25840 pycom13g26320 pycom13g28310 pycom13g28320 pycom1654g00080 pycom1654g00130 pycom1654g00140 pycom17g16570 pycom17g16660 pycom17g18490 pycom2238g00030 pycom2246g00120 pycom436g00480 pycom436g00510 pycom576g00010 pycom57g00060 pycom808g00560 pycom808g00650 pycom992g00010
rosa_chinensis	RchiOBHm_Chr0c04g0497971 RchiOBHm_Chr2g0129591 RchiOBHm_Chr7g0215791

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	71, 251, 541, 1136
AclWI	GGATC	4 cut(s)	207, 220, 474, 487
AcoI	YGGCCR	3 cut(s)	100, 563, 761
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	3 cut(s)	583, 801, 1169
AflIII	ACRYGT	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	773
AluBI	AGCT	2 cut(s)	649, 1096
AluI	AGCT	2 cut(s)	649, 1096
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	4 cut(s)	248, 359, 628, 968
AlwI	GGATC	4 cut(s)	207, 220, 474, 487
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	7 cut(s)	3, 100, 452, 563, 761, 900, 1033
ApaI	GGGCCC	1 cut(s)	1037
AspLEI	GCGC	1 cut(s)	1131
AspS9I	GGNCC	3 cut(s)	452, 1033, 1034
AsuC2I	CCSGG	2 cut(s)	210, 856
AsuHPI	GGTGA	3 cut(s)	255, 455, 853
AsuII	TTCGAA	2 cut(s)	381, 571
AvaI	CYCGRG	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	1037
BamHI	GGATCC	2 cut(s)	212, 479
BanII	GRGCYC	2 cut(s)	822, 1037
Bbv12I	GWGCWC	1 cut(s)	1080
BccI	CCATC	7 cut(s)	12, 128, 241, 732, 859, 940, 963
BceAI	ACGGC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	210, 856
BcoDI	GTCTC	4 cut(s)	248, 359, 628, 968
BfaI	CTAG	3 cut(s)	458, 1109, 1148
BglII	AGATCT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	210, 775, 856
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	452, 1033, 1034
BmiI	GGNNCC	4 cut(s)	214, 481, 771, 1035
BmrFI	CCNGG	3 cut(s)	210, 775, 856
BmsI	GCATC	4 cut(s)	130, 963, 1111, 1153
Bpu14I	TTCGAA	2 cut(s)	381, 571
BpuEI	CTTGAG	2 cut(s)	341, 718
BpuMI	CCSGG	2 cut(s)	210, 856
Bsa29I	ATCGAT	1 cut(s)	878
BsaBI	GATNNNNATC	2 cut(s)	572, 931
BsaJI	CCNNGG	9 cut(s)	10, 282, 686, 764, 773, 774, 855, 903, 1163
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 801, 1169
Bse3DI	GCAATG	1 cut(s)	30
Bse8I	GATNNNNATC	2 cut(s)	572, 931
BseBI	CCWGG	1 cut(s)	775
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	9 cut(s)	10, 282, 686, 764, 773, 774, 855, 903, 1163
BseGI	GGATG	7 cut(s)	23, 46, 851, 932, 974, 978, 1102
BseJI	GATNNNNATC	2 cut(s)	572, 931
BseLI	CCNNNNNNNGG	3 cut(s)	583, 801, 1169
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	735, 944
BseSI	GKGCMC	1 cut(s)	1037
BsgI	GTGCAG	1 cut(s)	826
BshFI	GGCC	7 cut(s)	5, 102, 454, 565, 763, 902, 1035
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	74, 210, 855
BslFI	GGGAC	3 cut(s)	599, 747, 1160
BslI	CCNNNNNNNGG	3 cut(s)	583, 801, 1169
BsmAI	GTCTC	4 cut(s)	248, 359, 628, 968
BsmBI	CGTCTC	2 cut(s)	248, 359
BsmFI	GGGAC	3 cut(s)	599, 747, 1160
BsnI	GGCC	7 cut(s)	5, 102, 454, 565, 763, 902, 1035
BsoBI	CYCGRG	1 cut(s)	644
Bsp119I	TTCGAA	2 cut(s)	381, 571
Bsp120I	GGGCCC	1 cut(s)	1033
Bsp1286I	GDGCHC	3 cut(s)	822, 1037, 1080
Bsp143I	GATC	5 cut(s)	92, 212, 479, 843, 879
Bsp19I	CCATGG	1 cut(s)	1163
BspACI	CCGC	4 cut(s)	71, 251, 541, 1136
BspANI	GGCC	7 cut(s)	5, 102, 454, 565, 763, 902, 1035
BspCNI	CTCAG	2 cut(s)	734, 945
BspDI	ATCGAT	1 cut(s)	878
BspLI	GGNNCC	4 cut(s)	214, 481, 771, 1035
BspPI	GGATC	4 cut(s)	207, 220, 474, 487
BspT104I	TTCGAA	2 cut(s)	381, 571
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	9 cut(s)	10, 282, 686, 764, 773, 774, 855, 903, 1163
BssMI	GATC	5 cut(s)	92, 212, 479, 843, 879
BssT1I	CCWWGG	5 cut(s)	10, 282, 686, 903, 1163
Bst2UI	CCWGG	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	631
BstBI	TTCGAA	2 cut(s)	381, 571
BstDEI	CTNAG	3 cut(s)	83, 721, 953
BstDSI	CCRYGG	2 cut(s)	764, 1163
BstF5I	GGATG	7 cut(s)	23, 46, 851, 932, 974, 978, 1102
BstHHI	GCGC	1 cut(s)	1131
BstKTI	GATC	5 cut(s)	95, 215, 482, 846, 882
BstMAI	GTCTC	4 cut(s)	248, 359, 628, 968
BstMBI	GATC	5 cut(s)	92, 212, 479, 843, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	1075, 1084, 1093, 1135
BstNI	CCWGG	1 cut(s)	775
BstNSI	RCATGY	2 cut(s)	684, 963
BstSCI	CCNGG	3 cut(s)	208, 773, 854
BstSLI	GKGCMC	1 cut(s)	1037
BstX2I	RGATCY	3 cut(s)	92, 212, 479
BstYI	RGATCY	3 cut(s)	92, 212, 479
Bsu15I	ATCGAT	1 cut(s)	878
BsuRI	GGCC	7 cut(s)	5, 102, 454, 565, 763, 902, 1035
BsuTUI	ATCGAT	1 cut(s)	878
BtgI	CCRYGG	2 cut(s)	764, 1163
BtsCI	GGATG	7 cut(s)	23, 46, 851, 932, 974, 978, 1102
CfoI	GCGC	1 cut(s)	1131
Cfr13I	GGNCC	3 cut(s)	452, 1033, 1034
ClaI	ATCGAT	1 cut(s)	878
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	6 cut(s)	157, 191, 681, 883, 960, 1164
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	3 cut(s)	83, 721, 953
DpnI	GATC	5 cut(s)	94, 214, 481, 845, 881
DpnII	GATC	5 cut(s)	92, 212, 479, 843, 879
EaeI	YGGCCR	3 cut(s)	100, 563, 761
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
EciI	GGCGGA	2 cut(s)	60, 266
Eco130I	CCWWGG	5 cut(s)	10, 282, 686, 903, 1163
Eco24I	GRGCYC	2 cut(s)	822, 1037
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	773
EcoT14I	CCWWGG	5 cut(s)	10, 282, 686, 903, 1163
EcoT38I	GRGCYC	2 cut(s)	822, 1037
ErhI	CCWWGG	5 cut(s)	10, 282, 686, 903, 1163
Esp3I	CGTCTC	2 cut(s)	248, 359
FaeI	CATG	6 cut(s)	160, 194, 684, 886, 963, 1167
FaqI	GGGAC	3 cut(s)	599, 747, 1160
FatI	CATG	6 cut(s)	156, 190, 680, 882, 959, 1163
FauI	CCCGC	1 cut(s)	1143
FokI	GGATG	7 cut(s)	30, 33, 838, 919, 981, 985, 1089
FriOI	GRGCYC	2 cut(s)	822, 1037
FspBI	CTAG	3 cut(s)	458, 1109, 1148
GlaI	GCGC	1 cut(s)	1130
HaeIII	GGCC	7 cut(s)	5, 102, 454, 565, 763, 902, 1035
HapII	CCGG	3 cut(s)	74, 210, 855
HhaI	GCGC	1 cut(s)	1131
Hin1II	CATG	6 cut(s)	160, 194, 684, 886, 963, 1167
Hin6I	GCGC	1 cut(s)	1129
HinP1I	GCGC	1 cut(s)	1129
HinfI	GANTC	8 cut(s)	43, 164, 568, 573, 587, 927, 1112, 1173
HpaII	CCGG	3 cut(s)	74, 210, 855
HphI	GGTGA	3 cut(s)	255, 455, 853
Hpy166II	GTNNAC	1 cut(s)	1121
Hpy188I	TCNGA	5 cut(s)	42, 348, 586, 968, 996
Hpy188III	TCNNGA	3 cut(s)	322, 358, 644
Hpy8I	GTNNAC	1 cut(s)	1121
HpyAV	CCTTC	5 cut(s)	16, 377, 591, 1064, 1163
HpyCH4IV	ACGT	4 cut(s)	257, 352, 416, 1158
HpyCH4V	TGCA	7 cut(s)	143, 220, 243, 310, 680, 807, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1075, 1084, 1093, 1135
HpyF3I	CTNAG	3 cut(s)	83, 721, 953
HpySE526I	ACGT	4 cut(s)	257, 352, 416, 1158
Hsp92II	CATG	6 cut(s)	160, 194, 684, 886, 963, 1167
HspAI	GCGC	1 cut(s)	1129
Kzo9I	GATC	5 cut(s)	92, 212, 479, 843, 879
LpnPI	CCDG	6 cut(s)	87, 223, 518, 760, 787, 868
LweI	GCATC	4 cut(s)	130, 963, 1111, 1153
MaeI	CTAG	3 cut(s)	458, 1109, 1148
MaeII	ACGT	4 cut(s)	257, 352, 416, 1158
MaeIII	GTNAC	2 cut(s)	500, 636
MalI	GATC	5 cut(s)	94, 214, 481, 845, 881
MboI	GATC	5 cut(s)	92, 212, 479, 843, 879
MboII	GAAGA	3 cut(s)	286, 529, 618
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	3 cut(s)	92, 212, 479
MhlI	GDGCHC	3 cut(s)	822, 1037, 1080
MluCI	AATT	9 cut(s)	104, 131, 195, 402, 673, 702, 834, 998, 1088
MlyI	GAGTC	2 cut(s)	1121, 1182
MmeI	TCCRAC	1 cut(s)	1072
MseI	TTAA	2 cut(s)	411, 693
MspI	CCGG	3 cut(s)	74, 210, 855
MspR9I	CCNGG	3 cut(s)	210, 775, 856
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	4 cut(s)	1075, 1084, 1093, 1135
NciI	CCSGG	2 cut(s)	210, 856
NcoI	CCATGG	1 cut(s)	1163
NdeII	GATC	5 cut(s)	92, 212, 479, 843, 879
NlaIII	CATG	6 cut(s)	160, 194, 684, 886, 963, 1167
NlaIV	GGNNCC	4 cut(s)	214, 481, 771, 1035
NmuCI	GTSAC	2 cut(s)	500, 636
NspI	RCATGY	2 cut(s)	684, 963
NspV	TTCGAA	2 cut(s)	381, 571
PaeR7I	CTCGAG	1 cut(s)	644
PasI	CCCWGGG	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	6 cut(s)	43, 164, 568, 573, 587, 927
PleI	GAGTC	2 cut(s)	1120, 1181
PpsI	GAGTC	2 cut(s)	1120, 1181
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	4 cut(s)	214, 481, 771, 1035
PspOMI	GGGCCC	1 cut(s)	1033
PspPI	GGNCC	3 cut(s)	452, 1033, 1034
PsuI	RGATCY	3 cut(s)	92, 212, 479
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	411, 693
Sau3AI	GATC	5 cut(s)	92, 212, 479, 843, 879
Sau96I	GGNCC	3 cut(s)	452, 1033, 1034
SchI	GAGTC	2 cut(s)	1121, 1182
ScrFI	CCNGG	3 cut(s)	210, 775, 856
SduI	GDGCHC	3 cut(s)	822, 1037, 1080
SfaNI	GCATC	4 cut(s)	130, 963, 1111, 1153
Sfr274I	CTCGAG	1 cut(s)	644
SfuI	TTCGAA	2 cut(s)	381, 571
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	3 cut(s)	356, 644, 697
SmoI	CTYRAG	3 cut(s)	356, 644, 697
Sse9I	AATT	9 cut(s)	104, 131, 195, 402, 673, 702, 834, 998, 1088
SsiI	CCGC	4 cut(s)	71, 251, 541, 1136
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	3 cut(s)	458, 1109, 1148
StyD4I	CCNGG	3 cut(s)	208, 773, 854
StyI	CCWWGG	5 cut(s)	10, 282, 686, 903, 1163
TaiI	ACGT	4 cut(s)	260, 355, 419, 1161
TaqI	TCGA	5 cut(s)	288, 381, 571, 645, 878
TasI	AATT	9 cut(s)	104, 131, 195, 402, 673, 702, 834, 998, 1088
TfiI	GAWTC	6 cut(s)	43, 164, 568, 573, 587, 927
Tru1I	TTAA	2 cut(s)	411, 693
Tru9I	TTAA	2 cut(s)	411, 693
TseFI	GTSAC	2 cut(s)	500, 636
Tsp45I	GTSAC	2 cut(s)	500, 636
TspDTI	ATGAA	3 cut(s)	35, 530, 1046
TspGWI	ACGGA	1 cut(s)	624
XceI	RCATGY	2 cut(s)	684, 963
XhoI	CTCGAG	1 cut(s)	644
XspI	CTAG	3 cut(s)	458, 1109, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.