Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

31014033 .. 31014720

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1217400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTTTTCAATTCCGTGCTGCTATTGTGAGTCCTTCTTCTCAAGCTTCTGGAAGAGTTGGGTTGGTTAAAGAGATGCAGGCAACTGCATGGAGATATTTGTTCTTCTACTTCCCGGCAGACGTATTTATGATTCTTCCACTGCCACAGGTCCTCTTTTTTGCTATTGTTCCAAAACTAAATGCTTCAAGGGTTTTGGGTGCAACAAAATCATTGAACTTCATAGTTGTCTTTCAATATGTGCTGAGGTTCCTTCGCATATGTTCCTTATTGAAAAAAGTTACAAGTAATTCGGGCATCCTCGCTGGAACTGCATGGGTTAATCTCTTTCTATACATGCTCGCTAGTCATGTTGTCGGAGCCTTTTGGTATTTGTTTTCTATAGAAAGGAACGTAACTTGCTGGAGTGAAGCATGTAAAAATCATGCCGGTGTGATACGAAGCGATATGTTTGCATGGGTGCAATCCAAAGAGACCGATGGCAAGAAAACACAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

167

Amino Acids

18.81

Weight (kDa)

9.79

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	5 cut(s)	11, 189, 217, 236, 274
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	151
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	473
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	251, 361
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	66, 306
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	428
BseGI	GGATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	116, 429
BsmAI	GTCTC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	251, 361
BspTNI	GGTCTC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	81, 342
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNSI	RCATGY	2 cut(s)	340, 417
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	81, 342
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	151
CviAII	CATG	7 cut(s)	90, 315, 337, 350, 414, 425, 456
CviJI	RGCY	2 cut(s)	47, 362
CviKI_1	RGCY	2 cut(s)	47, 362
DdeI	CTNAG	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
FaeI	CATG	7 cut(s)	93, 318, 340, 353, 417, 428, 459
FatI	CATG	7 cut(s)	89, 314, 336, 349, 413, 424, 455
FauNDI	CATATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	424
HapII	CCGG	2 cut(s)	116, 429
Hin1II	CATG	7 cut(s)	93, 318, 340, 353, 417, 428, 459
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	2 cut(s)	31, 133
HpaII	CCGG	2 cut(s)	116, 429
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	45, 263
HpyCH4IV	ACGT	2 cut(s)	123, 393
HpyCH4V	TGCA	6 cut(s)	79, 89, 203, 314, 455, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	2 cut(s)	123, 393
Hsp92II	CATG	7 cut(s)	93, 318, 340, 353, 417, 428, 459
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	8 cut(s)	36, 65, 129, 134, 291, 388, 442, 479
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	66, 306
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	123, 393
MaeIII	GTNAC	2 cut(s)	280, 394
MboII	GAAGA	4 cut(s)	30, 66, 97, 128
MluCI	AATT	2 cut(s)	11, 289
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	164, 240, 311
MseI	TTAA	2 cut(s)	69, 321
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	2 cut(s)	116, 429
MspR9I	CCNGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	311
NciI	CCSGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	260
NlaIII	CATG	7 cut(s)	93, 318, 340, 353, 417, 428, 459
NlaIV	GGNNCC	2 cut(s)	251, 361
NspI	RCATGY	2 cut(s)	340, 417
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	251, 361
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	69, 321
SatI	GCNGC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	5 cut(s)	49, 126, 153, 251, 396
SfaNI	GCATC	2 cut(s)	66, 306
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	2 cut(s)	11, 289
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	2 cut(s)	126, 396
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	2 cut(s)	11, 289
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	69, 321
Tru9I	TTAA	2 cut(s)	69, 321
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	151
XceI	RCATGY	2 cut(s)	340, 417
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.