Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Reverse (-)

36686995 .. 36690692

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTACTCACAAGAGCCGGACAACAATTCCAAGTCCTGCAAAGCCAAAGGCAGCGATCTCCGAGTTCATTTTAAGAACATTGCAGGCATACAATTGGATCTTGATACTCCGAAGTGGCTGCATATACTTCAATCTTTCTTTCTAAAAGGTGAGGACGAATGCTCGAATTGTGGAAGGGGATCCAGATTGACTTTGGATTTCTCCCAACCCATGCAGTTGATTGCATTATACATTTTCTGTGGACGATTTTGGCTAAATATTGAGAAATATCTTCTCAGGATTTTCTGTACGTGCGCGCTGAGGGTTCTTCGAACCTGCTCCTTGTTAACACTCATTATAAGGGCTTCTGGCATCCTTGATGAATCTGCATGGGCTAATCTCTCTTTCTTTATGCTGGCGTGTCATATTGTTGGTGGTCTGAAAACATATAAAGACAAGCCCCAAGGAAATCTTAGACCAGCCATCATGGAAAAAGAATGGACCAAATATGAAAGAAACACTGTTATCTATAAACAAGGAGCAAGGAAGTTCGTTGATAATGTCCAGGCGAGTATGGGGAATCAAGAAAGGATGCTGTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

195

Amino Acids

22.33

Weight (kDa)

9.13

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	323
AccII	CGCG	1 cut(s)	296
AclWI	GGATC	3 cut(s)	105, 174, 187
AfaI	GTAC	2 cut(s)	5, 289
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	543
AlwI	GGATC	3 cut(s)	105, 174, 187
ApeKI	GCWGC	2 cut(s)	51, 118
AspLEI	GCGC	2 cut(s)	296, 298
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	63, 105
BccI	CCATC	1 cut(s)	470
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	545
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	52, 119
BlsI	GCNGC	2 cut(s)	53, 120
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	360, 561
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	351, 576
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	289, 290
BsePI	GCGCGC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	63, 105
Bsh1236I	CGCG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	55, 97, 179
BspCNI	CTCAG	2 cut(s)	288, 291
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	105, 174, 187
BspT104I	TTCGAA	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	442
BssHII	GCGCGC	1 cut(s)	294
BssMI	GATC	3 cut(s)	55, 97, 179
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	502
BstBAI	YACGTR	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	85, 296, 396
BstDEI	CTNAG	3 cut(s)	275, 299, 452
BstF5I	GGATG	2 cut(s)	351, 576
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	296, 298
BstKTI	GATC	3 cut(s)	58, 100, 182
BstMBI	GATC	3 cut(s)	55, 97, 179
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	63, 105
BstX2I	RGATCY	2 cut(s)	97, 179
BstYI	RGATCY	2 cut(s)	97, 179
BtsCI	GGATG	2 cut(s)	351, 576
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	85, 296, 396
CfoI	GCGC	2 cut(s)	296, 298
Cfr13I	GGNCC	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	4, 288
CviAII	CATG	3 cut(s)	211, 369, 466
CviJI	RGCY	8 cut(s)	16, 44, 118, 253, 344, 374, 439, 461
CviKI_1	RGCY	8 cut(s)	16, 44, 118, 253, 344, 374, 439, 461
CviQI	GTAC	2 cut(s)	4, 288
DdeI	CTNAG	3 cut(s)	275, 299, 452
DpnI	GATC	3 cut(s)	57, 99, 181
DpnII	GATC	3 cut(s)	55, 97, 179
Eco130I	CCWWGG	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	3 cut(s)	214, 372, 469
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	3 cut(s)	210, 368, 465
Fnu4HI	GCNGC	2 cut(s)	52, 119
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	52, 119
GlaI	GCGC	2 cut(s)	295, 297
GluI	GCNGC	2 cut(s)	52, 119
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	2 cut(s)	296, 298
Hin1II	CATG	3 cut(s)	214, 372, 469
Hin6I	GCGC	2 cut(s)	294, 296
HinP1I	GCGC	2 cut(s)	294, 296
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	362, 559
HpaI	GTTAAC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	242, 327
Hpy188I	TCNGA	3 cut(s)	62, 111, 420
Hpy188III	TCNNGA	4 cut(s)	101, 183, 277, 563
Hpy8I	GTNNAC	2 cut(s)	242, 327
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	6 cut(s)	39, 83, 121, 214, 224, 368
HpyF3I	CTNAG	3 cut(s)	275, 299, 452
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	214, 372, 469
HspAI	GCGC	2 cut(s)	294, 296
KspAI	GTTAAC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	55, 97, 179
LmnI	GCTCC	2 cut(s)	323, 518
Lsp1109I	GCAGC	2 cut(s)	63, 105
LweI	GCATC	2 cut(s)	360, 561
MaeII	ACGT	1 cut(s)	290
MalI	GATC	3 cut(s)	57, 99, 181
MboI	GATC	3 cut(s)	55, 97, 179
MboII	GAAGA	2 cut(s)	263, 299
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	2 cut(s)	97, 179
MluCI	AATT	3 cut(s)	25, 92, 166
MnlI	CCTC	2 cut(s)	145, 294
MseI	TTAA	2 cut(s)	72, 326
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	296
NdeII	GATC	3 cut(s)	55, 97, 179
NlaIII	CATG	3 cut(s)	214, 372, 469
NlaIV	GGNNCC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	310
PauI	GCGCGC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	362, 559
PkrI	GCNGC	2 cut(s)	53, 120
Ppu21I	YACGTR	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	97, 179
PteI	GCGCGC	1 cut(s)	294
RsaI	GTAC	2 cut(s)	5, 289
RsaNI	GTAC	2 cut(s)	4, 288
SaqAI	TTAA	2 cut(s)	72, 326
SatI	GCNGC	2 cut(s)	52, 119
Sau3AI	GATC	3 cut(s)	55, 97, 179
Sau96I	GGNCC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	545
SetI	ASST	3 cut(s)	151, 293, 317
SfaNI	GCATC	2 cut(s)	360, 561
SfuI	TTCGAA	1 cut(s)	310
SinI	GGWCC	1 cut(s)	480
Sse9I	AATT	3 cut(s)	25, 92, 166
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	164, 310
TasI	AATT	3 cut(s)	25, 92, 166
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	362, 559
Tru1I	TTAA	2 cut(s)	72, 326
Tru9I	TTAA	2 cut(s)	72, 326
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	51, 118
TspDTI	ATGAA	3 cut(s)	56, 375, 504
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.