Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

66487530 .. 66488704

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGCTTGCTAGTCATGTTGTTGGTGCCTTTTGTCTTCCCAGGGACAGTAGGACTGATACAAAGCTATATCTTTGCTTTGGGGCTATTCGTGGAGTGCCATTCTTTGAAACCTTGGATAAGCAAGTGCTGGATGCAATGTGTGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

49

Amino Acids

5.47

Weight (kDa)

5.49

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	38, 39, 111
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	38, 39, 111
BseGI	GGATG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	38, 39, 111
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	2 cut(s)	64, 83
CviKI_1	RGCY	2 cut(s)	64, 83
Eco130I	CCWWGG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	17
FaiI	YATR	2 cut(s)	15, 67
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	13
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	25, 52, 113
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	9
MboII	GAAGA	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	25
PasI	CCCWGGG	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	2 cut(s)	66, 113
SfaNI	GCATC	1 cut(s)	121
SgeI	CNNG	9 cut(s)	17, 21, 26, 51, 52, 101, 124, 134, 140
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	47
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.