Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

5562 .. 6377

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgagattgaaggggcaagagatagagttgtggatggccttccattcccttcctcggaagctcaagaagcgaatatggcaataccagaaatacaaatggcaagaaactaaaggtgttgatgtggagaattttcttcacaatcttccccgggacatcagaagggaaacaaagcagtatctatgctctggtccactcagtcaagttccaatgcttcaaaatatggataaacgattgtttgatgcaatatgtgatcatctgaagccagtactttacatagagcacagtttcatacttcggaaaggagaccctctcgatgagatgttgttcatcactcgtggcaaagtattgacttacaccacagaaggcaatgtaggcgctgattgtcttgaaaagggtgacttctatggccaagaacttcttgactgggtgctcaagacttatcccaatgccagcctatccaaccttcccttctcaaccaaaacagtccaagcgcataccaaagttgaagtgtttgctctaagggctaatgacttgaagaatgtagtctctaagttctggtggcttttccccagtttggaccaatcacgccaaccaagggcagctcatgctttgcaagcagcatggcgccgctataaacagcttcaaaagactcccccgtctaaggagggcagtgtttctcgcactgaccatgctgtagtcccagaacccatgatagcatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

240

Amino Acids

27.99

Weight (kDa)

9.48

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	624
AciI	CCGC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	625
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	4 cut(s)	54, 574, 595, 661
AgsI	TTSAA	6 cut(s)	10, 215, 389, 506, 535, 644
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	3 cut(s)	61, 602, 640
AluI	AGCT	3 cut(s)	61, 602, 640
Alw21I	GWGCWC	2 cut(s)	282, 432
Alw26I	GTCTC	2 cut(s)	297, 550
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	36, 406
ApeKI	GCWGC	2 cut(s)	599, 617
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	3 cut(s)	377, 493, 627
AspS9I	GGNCC	2 cut(s)	188, 577
AsuC2I	CCSGG	2 cut(s)	148, 149
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	188, 577
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	282, 432
BbvI	GCAGC	2 cut(s)	611, 629
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	148, 149
BcoDI	GTCTC	2 cut(s)	297, 550
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	2 cut(s)	378, 628
BisI	GCNGC	3 cut(s)	600, 618, 628
BlsI	GCNGC	3 cut(s)	601, 619, 629
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	148, 149
Bme18I	GGWCC	2 cut(s)	188, 577
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	188, 577
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	2 cut(s)	148, 149
BmrI	ACTGGG	2 cut(s)	433, 564
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	2 cut(s)	433, 564
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpuEI	CTTGAG	2 cut(s)	47, 416
BpuMI	CCSGG	2 cut(s)	148, 149
BsaHI	GRCGYC	1 cut(s)	625
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	53, 146, 147, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 574, 595, 661
Bse1I	ACTGG	3 cut(s)	263, 428, 570
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	53, 146, 147, 593
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	54, 574, 595, 661
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	3 cut(s)	263, 428, 570
BseXI	GCAGC	2 cut(s)	611, 629
BshFI	GGCC	2 cut(s)	38, 408
BshNI	GGYRCC	1 cut(s)	624
BsiHKAI	GWGCWC	2 cut(s)	282, 432
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	164, 683
BslI	CCNNNNNNNGG	4 cut(s)	54, 574, 595, 661
BsmAI	GTCTC	2 cut(s)	297, 550
BsmFI	GGGAC	2 cut(s)	164, 683
BsnI	GGCC	2 cut(s)	38, 408
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	282, 432
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	2 cut(s)	38, 408
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	263, 428, 570
BssECI	CCNNGG	4 cut(s)	53, 146, 147, 593
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	625
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	284, 484
BstACI	GRCGYC	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	451, 615
BstDEI	CTNAG	4 cut(s)	194, 518, 549, 660
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	378, 628
BstHHI	GCGC	3 cut(s)	377, 493, 627
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	297, 550
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 605, 614
BstSCI	CCNGG	2 cut(s)	146, 147
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	2 cut(s)	611, 629
BsuRI	GGCC	2 cut(s)	38, 408
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	676, 681
Cac8I	GCNNGC	2 cut(s)	451, 615
CfoI	GCGC	3 cut(s)	377, 493, 627
Cfr13I	GGNCC	2 cut(s)	188, 577
Cfr9I	CCCGGG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	4 cut(s)	605, 621, 689, 709
CviJI	RGCY	9 cut(s)	38, 61, 262, 408, 453, 524, 562, 602, 640
CviKI_1	RGCY	9 cut(s)	38, 61, 262, 408, 453, 524, 562, 602, 640
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	4 cut(s)	194, 518, 549, 660
DinI	GGCGCC	1 cut(s)	626
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	188, 577
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	593
EgeI	GGCGCC	1 cut(s)	626
EheI	GGCGCC	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	4 cut(s)	608, 624, 692, 712
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 402, 434
FaqI	GGGAC	2 cut(s)	164, 683
FatI	CATG	4 cut(s)	604, 620, 688, 708
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	600, 618, 628
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	600, 618, 628
GlaI	GCGC	3 cut(s)	376, 492, 626
GluI	GCNGC	3 cut(s)	600, 618, 628
HaeII	RGCGCY	2 cut(s)	378, 628
HaeIII	GGCC	2 cut(s)	38, 408
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	3 cut(s)	377, 493, 627
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	608, 624, 692, 712
Hin6I	GCGC	3 cut(s)	375, 491, 625
HinP1I	GCGC	3 cut(s)	375, 491, 625
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	57, 158, 258, 297
Hpy188III	TCNNGA	5 cut(s)	64, 311, 386, 419, 433
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	7 cut(s)	4, 49, 59, 153, 356, 473, 478
HpyCH4III	ACNGT	2 cut(s)	284, 484
HpyCH4V	TGCA	2 cut(s)	242, 613
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 605, 614
HpyF3I	CTNAG	4 cut(s)	194, 518, 549, 660
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	4 cut(s)	608, 624, 692, 712
HspAI	GCGC	3 cut(s)	375, 491, 625
KasI	GGCGCC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	98, 161, 171, 276, 409, 463, 541, 583, 714
Lsp1109I	GCAGC	2 cut(s)	611, 629
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	125, 134, 547
MhlI	GDGCHC	2 cut(s)	282, 432
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	408
Mly113I	GGCGCC	1 cut(s)	625
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	3 cut(s)	63, 318, 658
Mox20I	TGGCCA	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	148, 149
MwoI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 605, 614
NarI	GGCGCC	1 cut(s)	625
NciI	CCSGG	2 cut(s)	148, 149
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	608, 624, 692, 712
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	601, 619, 629
PleI	GAGTC	1 cut(s)	643
PluTI	GGCGCC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	2 cut(s)	188, 577
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SatI	GCNGC	3 cut(s)	600, 618, 628
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	188, 577
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	148, 149
SduI	GDGCHC	2 cut(s)	282, 432
SetI	ASST	5 cut(s)	63, 115, 465, 604, 642
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	693
SfoI	GGCGCC	1 cut(s)	626
SinI	GGWCC	2 cut(s)	188, 577
SmaI	CCCGGG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	62, 431
SmoI	CTYRAG	2 cut(s)	62, 431
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	628
SspDI	GGCGCC	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	146, 147
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	284, 484
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	630
TscAI	CASTG	2 cut(s)	676, 688
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	599, 617
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	277, 316
TspMI	CCCGGG	1 cut(s)	147
TspRI	CASTG	2 cut(s)	676, 688
VpaK11BI	GGWCC	2 cut(s)	188, 577
XapI	RAATTY	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.