RchiOBHm_Chr1g0380271

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000755
Physical Location & Seq
Forward (+)
65976851 .. 65977609
759 bp
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UTR
Exon/CDS
Intron
PRQ60356

Sequence Viewer

Length: 471 bp
ATGTTTCTGGTTTTATGTGCTATTGCACTGTCACTGGATCCTCTGTTCTGTTTTATACTTGTTTCTGATGAGGAGAACAAGTGCCTCAGATTGGACAGAAAACTGGGAATCATAGCTGCAACAAAGTCATTGAACTTTTTAGTCATCTTTCAATATGTATTAAGGGTTCTTCGAATTTGCTCCTTGTTAAGAAGGGTTACAAGTATTTCTGGCATCCTCGCTGAAACTGCCTGGGCTAATCTCTTCCTTTATATGCTTGCTAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGGAAAGCAGCTTGTTGGCAAGAATCATGTGTAAATCGTGCCGGTGCTTACCCATGTTCTTTATATTGTGTTGCCACATTTGGAGCTAGCACAGTTCTGAATGACTCTTGCTCTGCAAAGACACCAAATGTCACACTTTTTGATTTTGGGATATACTTTGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

8.08

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AclWI GGATC 2 cut(s) 32, 45
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 133, 152
AjnI CCWGG 1 cut(s) 230
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 116, 314, 389
AluI AGCT 3 cut(s) 116, 314, 389
AlwI GGATC 2 cut(s) 32, 45
ApeKI GCWGC 2 cut(s) 116, 311
ApoI RAATTY 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 389
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 103, 323
BciT130I CCWGG 1 cut(s) 232
BfaI CTAG 2 cut(s) 261, 390
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 2 cut(s) 117, 312
BlsI GCNGC 2 cut(s) 118, 313
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 39, 277
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 222
BmtI GCTAGC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 39, 108
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 39, 108
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 103, 323
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 39, 277
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 32, 45
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 2 cut(s) 39, 108
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 30, 397
Bst6I CTCTTC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 258, 391
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 103, 323
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 26, 32
Cac8I GCNNGC 2 cut(s) 258, 391
Cfr10I RCCGGY 1 cut(s) 344
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 266, 330, 357
CviJI RGCY 4 cut(s) 116, 236, 314, 389
CviKI_1 RGCY 4 cut(s) 116, 236, 314, 389
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 230
FaeI CATG 3 cut(s) 269, 333, 360
FatI CATG 3 cut(s) 265, 329, 356
Fnu4HI GCNGC 2 cut(s) 117, 312
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 117, 312
FspBI CTAG 2 cut(s) 261, 390
GluI GCNGC 2 cut(s) 117, 312
HapII CCGG 1 cut(s) 345
Hin1II CATG 3 cut(s) 269, 333, 360
HinfI GANTC 4 cut(s) 108, 326, 407, 464
HpaII CCGG 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 67, 89, 402
Hpy188III TCNNGA 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 30, 397
HpyCH4V TGCA 3 cut(s) 26, 119, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 3 cut(s) 269, 333, 360
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 185, 386
LpnPI CCDG 6 cut(s) 20, 89, 195, 217, 244, 358
Lsp1109I GCAGC 2 cut(s) 103, 323
LweI GCATC 1 cut(s) 222
MaeI CTAG 2 cut(s) 261, 390
MaeIII GTNAC 3 cut(s) 30, 196, 433
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 161, 235
MflI RGATCY 1 cut(s) 37
MluCI AATT 1 cut(s) 174
MlyI GAGTC 2 cut(s) 401, 458
MnlI CCTC 4 cut(s) 51, 64, 95, 227
MseI TTAA 2 cut(s) 161, 188
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 37
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 269, 333, 360
NlaIV GGNNCC 2 cut(s) 39, 277
NmuCI GTSAC 2 cut(s) 30, 433
NspV TTCGAA 1 cut(s) 172
PfeI GAWTC 2 cut(s) 108, 326
PkrI GCNGC 2 cut(s) 118, 313
PleI GAGTC 2 cut(s) 401, 458
PpsI GAGTC 2 cut(s) 401, 458
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 39, 277
PsrI GAACNNNNNNTAC 2 cut(s) 150, 182
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 161, 188
SatI GCNGC 2 cut(s) 117, 312
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 2 cut(s) 401, 458
ScrFI CCNGG 1 cut(s) 232
SetI ASST 3 cut(s) 118, 316, 391
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 172
Sse9I AATT 1 cut(s) 174
SspMI CTAG 2 cut(s) 261, 390
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 30, 397
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 174
TfiI GAWTC 2 cut(s) 108, 326
Tru1I TTAA 2 cut(s) 161, 188
Tru9I TTAA 2 cut(s) 161, 188
TscAI CASTG 2 cut(s) 33, 39
TseFI GTSAC 2 cut(s) 30, 433
TseI GCWGC 2 cut(s) 116, 311
Tsp45I GTSAC 2 cut(s) 30, 433
TspRI CASTG 2 cut(s) 33, 39
XapI RAATTY 1 cut(s) 174
XspI CTAG 2 cut(s) 261, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.