Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Reverse (-)

2310328 .. 2311018

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGTATTGGAGAAGCAGTAAACTCCTACTATGGAGTCTTGGGTTCCAAGAAGAAAGTTCTTGGTCCACAGGAGCTTCGGAGATGGAATAGCATGTTTCTGGTTTTGTGTGCTATTGCACTGTCACCGGATCCTCTGTTCTGTTATATACTTGTTTCTGATGAGGAGAACAAGTGCCTCAGATTGGAGAGAAAACTGGGAATCACAGCTGTTATTTTGCGCTTCATCGTCGATTTCTTTTATATACTTCATATCATTTTTCAGTTTTGTGCTAGTGTTGCTAGTCTTTCTTCTCGAGCATCTGGAAAAGGTGAATTAATACTTGGAGAGATTCGGTCGTTAGCATGGAAATTTTTTCTGTTCTACTTTCCAGTTGACGTGCTTGTTGTTCTTCCACTACCACAGGGTTCTTCGAATTTGCTCCTTGTTAAGAAGGGTTACAAGTATTTCTGGCATCCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

154

Amino Acids

17.56

Weight (kDa)

9.36

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	125, 138
AcsI	RAATTY	2 cut(s)	350, 415
AfiI	CCNNNNNNNGG	1 cut(s)	184
AjiI	CACGTC	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	76, 209
AluI	AGCT	2 cut(s)	76, 209
AlwI	GGATC	2 cut(s)	125, 138
Ama87I	CYCGRG	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	350, 415
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	117, 323
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	130
BccI	CCATC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	273, 282
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	46, 132
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	201, 371
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	201, 371
BseRI	GAGGAG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	46, 132
BspPI	GGATC	2 cut(s)	125, 138
BspT104I	TTCGAA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	201, 371
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	2 cut(s)	94, 345
CviJI	RGCY	2 cut(s)	76, 209
CviKI_1	RGCY	2 cut(s)	76, 209
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	294
FaeI	CATG	2 cut(s)	97, 348
FaiI	YATR	8 cut(s)	33, 95, 147, 149, 243, 245, 252, 346
FatI	CATG	2 cut(s)	93, 344
FokI	GGATG	1 cut(s)	441
FspBI	CTAG	2 cut(s)	273, 282
GlaI	GCGC	1 cut(s)	221
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	97, 348
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	36, 201, 331
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	117, 323
Hpy166II	GTNNAC	3 cut(s)	22, 68, 376
Hpy188I	TCNGA	3 cut(s)	81, 160, 182
Hpy188III	TCNNGA	2 cut(s)	294, 303
Hpy8I	GTNNAC	3 cut(s)	22, 68, 376
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	97, 348
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	73, 426
LpnPI	CCDG	8 cut(s)	56, 86, 141, 182, 288, 384, 389, 436
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	273, 282
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	123, 437
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	64, 282, 383, 402
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	3 cut(s)	314, 350, 415
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	144, 157, 188
MseI	TTAA	2 cut(s)	317, 429
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	97, 348
NlaIV	GGNNCC	2 cut(s)	46, 132
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	201, 331
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	46, 132
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	317, 429
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	45
SetI	ASST	4 cut(s)	78, 211, 313, 381
SfaNI	GCATC	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	314, 350, 415
SspMI	CTAG	2 cut(s)	273, 282
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	231, 295, 413
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	314, 350, 415
TfiI	GAWTC	2 cut(s)	201, 331
Tru1I	TTAA	2 cut(s)	317, 429
Tru9I	TTAA	2 cut(s)	317, 429
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	214, 239
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	2 cut(s)	350, 415
XceI	RCATGY	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	294
XspI	CTAG	2 cut(s)	273, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.