Rh1CG414300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67598581 .. 67608048
9468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG414300.1

Sequence Viewer

Length: 921 bp
ATGAATGGATCAAAGATAGCCCGTGGACTTGACATCTACAGGAGCAAAATGAAGCAACAAGATCTCTTGGTTTTCAGTGAGATCTTTGTGACAGTACTTGTCGTCTTCATTATCCCTGCAATCATGTCGGTTCAAATTTCACGGACTGGTGATATAGAAGAAAATGATGAAGAAAGAATTCGGCAAGTTCATGGTACTAATTCAAGTGCAAGTCTAGCACCAGAGCACTCGGCTGTGAATATGGTCTATAGAGCTATGGGGCTAGAGAGTTTTGGGAAAACCATGAAAATTTATTGTGGAGTTTTGTCTATAGGCTTGAGTTCCAATGATAAAATTCTTCACCGCCAGAAATTAACCCAGAAAAGGTGGAATAAGATGCTTCTTGTTCTGTGTGTCATCGCGCTCTCACTGGATCCTTTGTTTTGTTATACTATTGTGGTTAATGATGAGAAGAAGTGCCTTGGATTGGACAGAACATTAGGAGCTATAGCTATTGTTTTGCGATTTGTGGTTGATTTCTTTTATGTGCTCTACATCATTTATCGATTCCGTCCTAGTGTTGCCACTCTTTCTTCTCAATCATTGAGAGAAGGTCGAGCAAGAGCATGGAGATATTTGTTGTTGTACTTCCTATTTGACATACTTGTAATACTCCCACTTCCACAGACATATTTGCAATCGAAAACAACAAGGCTGGAGAAAATGAGATTGAAGCGGCAAGAGATAGACTTGTGGATGGCCATCCATTCCCTTCCTAGGGAGCTCAAGAAGCAAATAAGGCAATACCAGAAATACAAATGGCAAGTAACTAGAGGTGTTGATGTGGAGAGTCTTCTTCACAATCTTCCCCGGGACATCAAAAGGGAAACTAAGCTGCATTTATGCTCCAGTTCACTCAATAAAGTGAGTATGTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

306

Amino Acids

35.59

Weight (kDa)

9.77

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 401
AciI CCGC 2 cut(s) 343, 715
AclWI GGATC 3 cut(s) 16, 407, 420
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 4 cut(s) 135, 177, 288, 333
AfaI GTAC 3 cut(s) 96, 196, 626
AfiI CCNNNNNNNGG 4 cut(s) 363, 466, 756, 757
AgsI TTSAA 3 cut(s) 134, 204, 712
AluBI AGCT 5 cut(s) 254, 485, 491, 763, 874
AluI AGCT 5 cut(s) 254, 485, 491, 763, 874
Alw21I GWGCWC 3 cut(s) 228, 531, 765
AlwI GGATC 3 cut(s) 16, 407, 420
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 1 cut(s) 874
ApoI RAATTY 4 cut(s) 135, 177, 288, 333
Asp700I GAANNNNTTC 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 755
AspLEI GCGC 1 cut(s) 403
AsuC2I CCSGG 2 cut(s) 850, 851
AsuHPI GGTGA 2 cut(s) 161, 332
AvaI CYCGRG 1 cut(s) 849
AvrII CCTAGG 1 cut(s) 755
BalI TGGCCA 1 cut(s) 740
BamHI GGATCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 97, 824
Bbv12I GWGCWC 3 cut(s) 228, 531, 765
BbvI GCAGC 1 cut(s) 861
BccI CCATC 2 cut(s) 730, 749
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcnI CCSGG 2 cut(s) 850, 851
BfaI CTAG 5 cut(s) 215, 263, 555, 756, 810
BfmI CTRYAG 4 cut(s) 37, 247, 309, 486
BglII AGATCT 2 cut(s) 61, 81
BisI GCNGC 2 cut(s) 716, 875
BlnI CCTAGG 1 cut(s) 755
BlsI GCNGC 2 cut(s) 717, 876
BmcAI AGTACT 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 850, 851
BmeT110I CYCGRG 1 cut(s) 849
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 850, 851
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 97, 824
BpmI CTGGAG 2 cut(s) 716, 871
BpuEI CTTGAG 2 cut(s) 337, 749
BpuMI CCSGG 2 cut(s) 850, 851
Bsa29I ATCGAT 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 740
BsaJI CCNNGG 5 cut(s) 22, 460, 755, 848, 849
Bsc4I CCNNNNNNNGG 4 cut(s) 363, 466, 756, 757
Bse1I ACTGG 3 cut(s) 151, 414, 888
Bse8I GATNNNNATC 1 cut(s) 740
BseCI ATCGAT 1 cut(s) 544
BseDI CCNNGG 5 cut(s) 22, 460, 755, 848, 849
BseGI GGATG 2 cut(s) 741, 741
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 4 cut(s) 363, 466, 756, 757
BseNI ACTGG 3 cut(s) 151, 414, 888
BseXI GCAGC 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 1 cut(s) 740
BshVI ATCGAT 1 cut(s) 544
BsiHKAI GWGCWC 3 cut(s) 228, 531, 765
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 1 cut(s) 850
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 4 cut(s) 363, 466, 756, 757
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 1 cut(s) 740
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 3 cut(s) 228, 531, 765
Bsp143I GATC 4 cut(s) 8, 61, 81, 412
BspACI CCGC 2 cut(s) 343, 715
BspANI GGCC 1 cut(s) 740
BspDI ATCGAT 1 cut(s) 544
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 3 cut(s) 16, 407, 420
BsrI ACTGG 3 cut(s) 151, 414, 888
BssECI CCNNGG 5 cut(s) 22, 460, 755, 848, 849
BssMI GATC 4 cut(s) 8, 61, 81, 412
BssT1I CCWWGG 2 cut(s) 460, 755
Bst4CI ACNGT 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 870
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 741, 741
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 4 cut(s) 11, 64, 84, 415
BstMBI GATC 4 cut(s) 8, 61, 81, 412
BstMWI GCNNNNNNNGC 3 cut(s) 215, 769, 778
BstSCI CCNGG 2 cut(s) 848, 849
BstSFI CTRYAG 4 cut(s) 37, 247, 309, 486
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 861
BstV2I GAAGAC 2 cut(s) 97, 824
BstX2I RGATCY 3 cut(s) 61, 81, 412
BstYI RGATCY 3 cut(s) 61, 81, 412
Bsu15I ATCGAT 1 cut(s) 544
BsuRI GGCC 1 cut(s) 740
BsuTUI ATCGAT 1 cut(s) 544
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 382
BtsCI GGATG 2 cut(s) 741, 741
BtsIMutI CAGTG 2 cut(s) 82, 407
CfoI GCGC 1 cut(s) 403
Cfr9I CCCGGG 1 cut(s) 849
ClaI ATCGAT 1 cut(s) 544
Csp6I GTAC 3 cut(s) 95, 195, 625
CviAII CATG 4 cut(s) 124, 191, 283, 606
CviQI GTAC 3 cut(s) 95, 195, 625
DdeI CTNAG 1 cut(s) 870
DpnI GATC 4 cut(s) 10, 63, 83, 414
DpnII GATC 4 cut(s) 8, 61, 81, 412
EaeI YGGCCR 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 2 cut(s) 460, 755
Eco24I GRGCYC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 460, 755
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 2 cut(s) 460, 755
FaeI CATG 4 cut(s) 127, 194, 286, 609
FaqI GGGAC 1 cut(s) 866
FatI CATG 4 cut(s) 123, 190, 282, 605
Fnu4HI GCNGC 2 cut(s) 716, 875
FokI GGATG 2 cut(s) 728, 748
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 2 cut(s) 716, 875
FspBI CTAG 5 cut(s) 215, 263, 555, 756, 810
GlaI GCGC 1 cut(s) 402
GluI GCNGC 2 cut(s) 716, 875
GsuI CTGGAG 2 cut(s) 716, 871
HaeIII GGCC 1 cut(s) 740
HapII CCGG 1 cut(s) 850
HhaI GCGC 1 cut(s) 403
Hin1II CATG 4 cut(s) 127, 194, 286, 609
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 2 cut(s) 546, 829
HpaII CCGG 1 cut(s) 850
HphI GGTGA 2 cut(s) 161, 332
Hpy166II GTNNAC 2 cut(s) 26, 893
Hpy188III TCNNGA 1 cut(s) 766
Hpy8I GTNNAC 2 cut(s) 26, 893
HpyAV CCTTC 2 cut(s) 584, 761
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 119, 209, 676, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 769, 778
HpyF3I CTNAG 1 cut(s) 870
Hsp92II CATG 4 cut(s) 127, 194, 286, 609
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 4 cut(s) 8, 61, 81, 412
LmnI GCTCC 4 cut(s) 42, 482, 760, 890
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 1 cut(s) 366
MaeI CTAG 5 cut(s) 215, 263, 555, 756, 810
MaeIII GTNAC 2 cut(s) 88, 805
MalI GATC 4 cut(s) 10, 63, 83, 414
MboI GATC 4 cut(s) 8, 61, 81, 412
MboII GAAGA 9 cut(s) 97, 170, 182, 329, 463, 564, 824, 827, 836
MflI RGATCY 3 cut(s) 61, 81, 412
MhlI GDGCHC 3 cut(s) 228, 531, 765
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 6 cut(s) 135, 177, 199, 288, 333, 350
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 1 cut(s) 838
MnlI CCTC 1 cut(s) 806
Mox20I TGGCCA 1 cut(s) 740
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 740
MseI TTAA 2 cut(s) 353, 441
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 1 cut(s) 850
MspR9I CCNGG 2 cut(s) 850, 851
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 3 cut(s) 215, 769, 778
NciI CCSGG 2 cut(s) 850, 851
NdeII GATC 4 cut(s) 8, 61, 81, 412
NlaIII CATG 4 cut(s) 127, 194, 286, 609
NlaIV GGNNCC 1 cut(s) 414
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 546
PkrI GCNGC 2 cut(s) 717, 876
PleI GAGTC 1 cut(s) 837
PpsI GAGTC 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 414
PsuI RGATCY 3 cut(s) 61, 81, 412
RsaI GTAC 3 cut(s) 96, 196, 626
RsaNI GTAC 3 cut(s) 95, 195, 625
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 2 cut(s) 353, 441
SatI GCNGC 2 cut(s) 716, 875
Sau3AI GATC 4 cut(s) 8, 61, 81, 412
ScaI AGTACT 1 cut(s) 96
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 2 cut(s) 850, 851
SduI GDGCHC 3 cut(s) 228, 531, 765
SetI ASST 8 cut(s) 256, 368, 487, 493, 595, 765, 817, 876
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 4 cut(s) 37, 247, 309, 486
SmaI CCCGGG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 316, 764
SmoI CTYRAG 2 cut(s) 316, 764
Sse9I AATT 6 cut(s) 135, 177, 199, 288, 333, 350
SsiI CCGC 2 cut(s) 343, 715
SspMI CTAG 5 cut(s) 215, 263, 555, 756, 810
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 848, 849
StyI CCWWGG 2 cut(s) 460, 755
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 3 cut(s) 544, 595, 680
TasI AATT 6 cut(s) 135, 177, 199, 288, 333, 350
TatI WGTACW 2 cut(s) 94, 624
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 1 cut(s) 546
Tru1I TTAA 2 cut(s) 353, 441
Tru9I TTAA 2 cut(s) 353, 441
TscAI CASTG 2 cut(s) 82, 414
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 874
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 6 cut(s) 17, 65, 97, 179, 183, 299
TspGWI ACGGA 2 cut(s) 157, 539
TspMI CCCGGG 1 cut(s) 849
TspRI CASTG 2 cut(s) 82, 414
XapI RAATTY 4 cut(s) 135, 177, 288, 333
XmaI CCCGGG 1 cut(s) 849
XmaJI CCTAGG 1 cut(s) 755
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 215, 263, 555, 756, 810
ZrmI AGTACT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.