Rroxscaffold_4G00285960

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000755
Physical Location & Seq
Reverse (-)
7140158 .. 7145164
5007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285960.1

Sequence Viewer

Length: 291 bp
ATGGGGACTTGTGTCAGCTGTAAAGTTAGTTGCTTCATTGCTATAATTTTAATAATGTTTTGTATTCAGGGGAAATTGGCTGCTGCTGTGACGAAAAAAGGGGTCAGAAGAGCCACTCGGAGTTTTCTTCACACTCTTGCTGCTCAGTACGTGCTGAGGGTTCTTCGAACCTGCTCCTTGTTAACACTCATTATAAGGGCTTCAGGCATCCTTGCTGAATCTGCATGGGCTAATCTCTCTTTCTTTATGCTGGCGACTCATTTGTGGAAGAAAGCAACACATGTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

96

Amino Acids

10.59

Weight (kDa)

10.41

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 280
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 80, 83, 140
AsuII TTCGAA 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 67, 70, 127
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 81, 84, 141
BlsI GCNGC 3 cut(s) 82, 85, 142
BmsI GCATC 1 cut(s) 216
BoxI GACNNNNGTC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 36
BseGI GGATG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 146, 158
BseXI GCAGC 3 cut(s) 67, 70, 127
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 166
BspCNI CTCAG 2 cut(s) 147, 157
BspMI ACCTGC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 144, 155
BstF5I GGATG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 284
BstPAI GACNNNNGTC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 67, 70, 127
BtsCI GGATG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 225, 281
CviJI RGCY 5 cut(s) 18, 80, 113, 200, 230
CviKI_1 RGCY 5 cut(s) 18, 80, 113, 200, 230
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 144, 155
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 186
FaeI CATG 2 cut(s) 228, 284
FaiI YATR 5 cut(s) 44, 194, 226, 248, 282
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 224, 280
Fnu4HI GCNGC 3 cut(s) 81, 84, 141
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 81, 84, 141
GluI GCNGC 3 cut(s) 81, 84, 141
Hin1II CATG 2 cut(s) 228, 284
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 2 cut(s) 218, 256
HpaI GTTAAC 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 107, 120
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 224, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 144, 155
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 228, 284
KspAI GTTAAC 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 53, 184, 189, 236
Lsp1109I GCAGC 3 cut(s) 67, 70, 127
LweI GCATC 1 cut(s) 216
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 4 cut(s) 119, 120, 155, 280
MluCI AATT 2 cut(s) 45, 74
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 1 cut(s) 150
MseI TTAA 3 cut(s) 50, 182, 289
MspA1I CMGCKG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 221
NlaIII CATG 2 cut(s) 228, 284
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 166
PciI ACATGT 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 82, 85, 142
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 151
PscI ACATGT 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 11
PsiI TTATAA 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 50, 182, 289
SatI GCNGC 3 cut(s) 81, 84, 141
SchI GAGTC 1 cut(s) 250
SetI ASST 3 cut(s) 20, 153, 173
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 166
Sse9I AATT 2 cut(s) 45, 74
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 45, 74
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 50, 182, 289
Tru9I TTAA 3 cut(s) 50, 182, 289
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 80, 83, 140
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 25
XceI RCATGY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.