Rh1CG413000

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67546637 .. 67547294
658 bp
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UTR
Exon/CDS
Intron
Rh1CG413000.1

Sequence Viewer

Length: 450 bp
ATGATTCAAGGTTATAAGGCAACAAAGTCATTGAACTTTTTAGTCATCTTTCAATATGTATTAAGGGTTCTTCGAATTTGCTCCTTGTTAAGAAGGGTTACAAGTATTTCTGGCATCCTCGCTGAAACTGCCTGGGCTAATCTCTTCCTTTATATGCTTGCTAGTCATGTTGTTGGTGCCCTTTCGTACTTGTTTTCTATAGAAAGGAAAGCAGCTTGTTGGCAAGAATCATGTGTAAATCGTGCCGGTGCTTACCCATGTTCTTTATATTGTGTTGCCACATTTGGAGCTAGCACAGTTCTGAATGACTCTTGCTCTGCAAAGACACCAAATGTCACACTTTTTGATTTTGGGATATACTTTGACGCTCTTGAATCTGGTGTCATCGACTCAGCAGATTTTGTACAAAGGATTTCTTACTGTTTTTTTGGTGGGGACTGCAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

149

Amino Acids

16.48

Weight (kDa)

8.11

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 2 cut(s) 188, 405
AgsI TTSAA 4 cut(s) 8, 34, 53, 374
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 215, 290
AluI AGCT 2 cut(s) 215, 290
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 133
BfaI CTAG 2 cut(s) 162, 291
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 123
BmtI GCTAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 245
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 298, 422
Bst6I CTCTTC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 159, 292
BstDEI CTNAG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 159, 292
Cfr10I RCCGGY 1 cut(s) 245
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 187, 404
CviAII CATG 3 cut(s) 167, 231, 258
CviJI RGCY 3 cut(s) 137, 215, 290
CviKI_1 RGCY 3 cut(s) 137, 215, 290
CviQI GTAC 2 cut(s) 187, 404
DdeI CTNAG 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 170, 234, 261
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 3 cut(s) 166, 230, 257
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 162, 291
GluI GCNGC 1 cut(s) 213
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 170, 234, 261
HinfI GANTC 5 cut(s) 4, 227, 308, 374, 389
HpaII CCGG 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 303, 449
Hpy188III TCNNGA 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 298, 422
HpyCH4V TGCA 2 cut(s) 320, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 391
Hsp92II CATG 3 cut(s) 170, 234, 261
LmnI GCTCC 2 cut(s) 86, 287
LpnPI CCDG 5 cut(s) 96, 118, 145, 259, 363
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 162, 291
MaeIII GTNAC 2 cut(s) 97, 334
MboII GAAGA 2 cut(s) 62, 136
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 75
MlyI GAGTC 2 cut(s) 302, 383
MnlI CCTC 1 cut(s) 128
MseI TTAA 2 cut(s) 62, 89
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 128
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 170, 234, 261
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 73
PfeI GAWTC 3 cut(s) 4, 227, 374
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 302, 383
PpsI GAGTC 2 cut(s) 302, 383
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 178
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
RsaI GTAC 2 cut(s) 188, 405
RsaNI GTAC 2 cut(s) 187, 404
SaqAI TTAA 2 cut(s) 62, 89
SatI GCNGC 1 cut(s) 213
SchI GAGTC 2 cut(s) 302, 383
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 13, 217, 292
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 73
Sse9I AATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 162, 291
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 298, 422
TaqI TCGA 2 cut(s) 73, 387
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 3 cut(s) 4, 227, 374
Tru1I TTAA 2 cut(s) 62, 89
Tru9I TTAA 2 cut(s) 62, 89
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 334
XapI RAATTY 1 cut(s) 75
XspI CTAG 2 cut(s) 162, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.