Rh1CG413800

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67579022 .. 67581855
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG413800.1

Sequence Viewer

Length: 1347 bp
ATGGCGCTTCAAATGTCAAGGATACAGAATGGTGATATAGAAGAAAATGGTGGAGAACTAATTCAAAGGGCCAATGGTACTCTTTCAAGTGCAAGTTTAGCATCAGTGGACTCGGCTGTCGATAAGGTCTATAGAGCTATGGGGCCTGGTTTTGAAGGGCTAAAGAGTTTTAGGAAAACCATGAAAATCTATTATGGAGTTTTGTCTATAGGCTTGAGTTCCAATAATAAAATTCTTTACCGCCAGGAATTAACCCAGCACAGGTGGAATAAGATGCTTCTTGTTCTGTGTGTCATCGCTCTCTCACTGGATCCCTTGTTTTGTTATATTCTTGTGGTTAATGATGAGAAGAAGTGCCTTGGATTGGACAGAACATTAGGAGCTATAGTTAGTGTTCTGCGATTTGTCGTGGATTTCTTTTATGTGTTTTATATCATTTATCAATTTCGGGCTAGTGTTGTCACTCTTTGTTCTCAATCATCGAAAGAAGGTGAACTGGTTCCACATACTCGGGCAAGAGCATGGAGATATTTGTTGTTGTACTTCATATTCGACATCCTTGTAGTTCTTCCACTTCCACAGACATATTTGCAATCGAAAACAGCAAGGCTGGAGGAAATGAGATTGAAGGGGCAAGAGATGGAGTTGTGGATGGCCTTCCATTCCCTTCCTCGGAAGCTCAAGAAGCGAATATGGCAATACCAGAAATACAAATGGCAAGAAACTAAAGGTGTTGATGTGGAGAATTTTCTTCACAATCTTCCCCGGGACATCAGAAGGGAAACAAAGCAGTATCTATGCTCTGGTCCACTCAGTCAAGTTCCAATGCTTCAAAATATGGATAAACGATTGTTTGATGCAATATGTGATCATCTGAAGCCAGTACTTTACATAGAGCACAGTTTCATACTTCGGAAAGGAGACCCTCTCGATGAGATGTTGTTCATCACTCGTGGCAAAGTATTGACTTACACCACAGAAGGCAATGCAGGCGCTGATTGTCTCGAAAAGGGGGACTTCTATGGCCAAGAACTTCTTGACTGGGTGCTCAAGACTTATCCCAATCCCAGCCTATCCAACCTTCCCTTCTCAACCAAAACAGTCCAAGCGCATACCAAAGTTGAAGTGTTTGCTCTAAGGGCTAATGACTTGAAAAATGTAGTCTCTAAGTTCTGGTGGCTTTTCCCCAGCAAGGGTTTGGACCAATCACGCCAACCAAGGGCAGCTCATGCTTTGCAAGCAGCATGGCGCCGCTATAAACAGCTTCAAAAGACTCCCCGGTCTAAGGAGGGCAGTGTTTCTGGCACTGACCATGCTGTAGTCTCAGAACCCATGATAGCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

448

Amino Acids

51.56

Weight (kDa)

9.39

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 116, 1279
AccB1I GGYRCC 1 cut(s) 1248
AciI CCGC 2 cut(s) 241, 1252
AclWI GGATC 2 cut(s) 305, 318
AcoI YGGCCR 1 cut(s) 1024
AcsI RAATTY 2 cut(s) 231, 745
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 1249
AfaI GTAC 3 cut(s) 79, 542, 885
AfiI CCNNNNNNNGG 7 cut(s) 261, 364, 672, 1192, 1193, 1219, 1285
AgsI TTSAA 9 cut(s) 11, 65, 87, 155, 628, 833, 1124, 1153, 1268
AjnI CCWGG 2 cut(s) 145, 243
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
AluBI AGCT 5 cut(s) 137, 383, 679, 1226, 1264
AluI AGCT 5 cut(s) 137, 383, 679, 1226, 1264
Alw21I GWGCWC 2 cut(s) 900, 1050
Alw26I GTCTC 4 cut(s) 915, 1007, 1168, 1327
AlwI GGATC 2 cut(s) 305, 318
AlwNI CAGNNNCTG 1 cut(s) 995
Ama87I CYCGRG 2 cut(s) 510, 765
AoxI GGCC 4 cut(s) 69, 143, 654, 1024
ApeKI GCWGC 2 cut(s) 1223, 1241
ApoI RAATTY 2 cut(s) 231, 745
Asp700I GAANNNNTTC 2 cut(s) 60, 498
AspLEI GCGC 4 cut(s) 7, 995, 1111, 1251
AspS9I GGNCC 4 cut(s) 69, 143, 806, 1201
AsuC2I CCSGG 3 cut(s) 766, 767, 1279
AsuHPI GGTGA 2 cut(s) 44, 503
AvaI CYCGRG 2 cut(s) 510, 765
AvaII GGWCC 2 cut(s) 806, 1201
BalI TGGCCA 1 cut(s) 1026
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 1248
BauI CACGAG 1 cut(s) 951
Bbv12I GWGCWC 2 cut(s) 900, 1050
BbvI GCAGC 2 cut(s) 1235, 1253
BccI CCATC 2 cut(s) 634, 646
BciT130I CCWGG 2 cut(s) 147, 245
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 3 cut(s) 766, 767, 1279
BcoDI GTCTC 4 cut(s) 915, 1007, 1168, 1327
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 4 cut(s) 130, 207, 384, 1317
BfoI RGCGCY 3 cut(s) 8, 996, 1252
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 3 cut(s) 1224, 1242, 1252
BlsI GCNGC 3 cut(s) 1225, 1243, 1253
BmcAI AGTACT 1 cut(s) 885
Bme1390I CCNGG 5 cut(s) 147, 245, 766, 767, 1279
Bme18I GGWCC 2 cut(s) 806, 1201
BmeT110I CYCGRG 2 cut(s) 510, 765
BmgT120I GGNCC 4 cut(s) 69, 143, 806, 1201
BmiI GGNNCC 4 cut(s) 144, 312, 501, 1250
BmrFI CCNGG 5 cut(s) 147, 245, 766, 767, 1279
BmrI ACTGGG 1 cut(s) 1051
BmsI GCATC 3 cut(s) 110, 264, 847
BmuI ACTGGG 1 cut(s) 1051
BplI GAGNNNNNCTC 2 cut(s) 912, 944
BpmI CTGGAG 1 cut(s) 632
BpuEI CTTGAG 3 cut(s) 235, 665, 1034
BpuMI CCSGG 3 cut(s) 766, 767, 1279
BsaHI GRCGYC 1 cut(s) 1249
BsaI GGTCTC 1 cut(s) 915
BsaJI CCNNGG 6 cut(s) 358, 671, 764, 765, 1217, 1277
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 7 cut(s) 261, 364, 672, 1192, 1193, 1219, 1285
Bse1I ACTGG 4 cut(s) 312, 501, 881, 1046
Bse3DI GCAATG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 147, 245
BseDI CCNNGG 6 cut(s) 358, 671, 764, 765, 1217, 1277
BseGI GGATG 2 cut(s) 555, 657
BseLI CCNNNNNNNGG 7 cut(s) 261, 364, 672, 1192, 1193, 1219, 1285
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 2 cut(s) 826, 1338
BseNI ACTGG 4 cut(s) 312, 501, 881, 1046
BseXI GCAGC 2 cut(s) 1235, 1253
BseYI CCCAGC 3 cut(s) 255, 1067, 1187
BshFI GGCC 4 cut(s) 71, 145, 656, 1026
BshNI GGYRCC 1 cut(s) 1248
BsiHKAI GWGCWC 2 cut(s) 900, 1050
BsiHKCI CYCGRG 2 cut(s) 510, 765
BsiSI CCGG 2 cut(s) 766, 1279
BslFI GGGAC 2 cut(s) 782, 1028
BslI CCNNNNNNNGG 7 cut(s) 261, 364, 672, 1192, 1193, 1219, 1285
BsmAI GTCTC 4 cut(s) 915, 1007, 1168, 1327
BsmFI GGGAC 2 cut(s) 782, 1028
BsnI GGCC 4 cut(s) 71, 145, 656, 1026
Bso31I GGTCTC 1 cut(s) 915
BsoBI CYCGRG 2 cut(s) 510, 765
Bsp1286I GDGCHC 2 cut(s) 900, 1050
Bsp143I GATC 2 cut(s) 310, 868
BspACI CCGC 2 cut(s) 241, 1252
BspANI GGCC 4 cut(s) 71, 145, 656, 1026
BspCNI CTCAG 2 cut(s) 825, 1337
BspLI GGNNCC 4 cut(s) 144, 312, 501, 1250
BspPI GGATC 2 cut(s) 305, 318
BspT107I GGYRCC 1 cut(s) 1248
BspTNI GGTCTC 1 cut(s) 915
BsrDI GCAATG 1 cut(s) 991
BsrI ACTGG 4 cut(s) 312, 501, 881, 1046
BssECI CCNNGG 6 cut(s) 358, 671, 764, 765, 1217, 1277
BssMI GATC 2 cut(s) 310, 868
BssNI GRCGYC 1 cut(s) 1249
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 2 cut(s) 358, 1217
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 2 cut(s) 147, 245
Bst4CI ACNGT 2 cut(s) 902, 1102
BstACI GRCGYC 1 cut(s) 1249
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstC8I GCNNGC 2 cut(s) 991, 1239
BstDEI CTNAG 5 cut(s) 812, 1136, 1167, 1284, 1324
BstF5I GGATG 2 cut(s) 555, 657
BstH2I RGCGCY 3 cut(s) 8, 996, 1252
BstHHI GCGC 4 cut(s) 7, 995, 1111, 1251
BstKTI GATC 2 cut(s) 313, 871
BstMAI GTCTC 4 cut(s) 915, 1007, 1168, 1327
BstMBI GATC 2 cut(s) 310, 868
BstMWI GCNNNNNNNGC 7 cut(s) 98, 685, 694, 990, 1139, 1229, 1238
BstNI CCWGG 2 cut(s) 147, 245
BstSCI CCNGG 5 cut(s) 145, 243, 764, 765, 1277
BstSFI CTRYAG 4 cut(s) 130, 207, 384, 1317
BstV1I GCAGC 2 cut(s) 1235, 1253
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 71, 145, 656, 1026
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 555, 657
BtsI GCAGTG 1 cut(s) 1300
BtsIMutI CAGTG 4 cut(s) 111, 305, 1300, 1305
Cac8I GCNNGC 2 cut(s) 991, 1239
CaiI CAGNNNCTG 1 cut(s) 995
CfoI GCGC 4 cut(s) 7, 995, 1111, 1251
Cfr13I GGNCC 4 cut(s) 69, 143, 806, 1201
Cfr9I CCCGGG 1 cut(s) 765
Csp6I GTAC 3 cut(s) 78, 541, 884
CviAII CATG 6 cut(s) 181, 522, 1229, 1245, 1313, 1333
CviQI GTAC 3 cut(s) 78, 541, 884
DdeI CTNAG 5 cut(s) 812, 1136, 1167, 1284, 1324
DinI GGCGCC 1 cut(s) 1250
DpnI GATC 2 cut(s) 312, 870
DpnII GATC 2 cut(s) 310, 868
DrdI GACNNNNNNGTC 2 cut(s) 116, 1279
DseDI GACNNNNNNGTC 2 cut(s) 116, 1279
EaeI YGGCCR 1 cut(s) 1024
Eco130I CCWWGG 2 cut(s) 358, 1217
Eco31I GGTCTC 1 cut(s) 915
Eco47I GGWCC 2 cut(s) 806, 1201
Eco57I CTGAAG 1 cut(s) 896
Eco88I CYCGRG 2 cut(s) 510, 765
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 145, 243
EcoT14I CCWWGG 2 cut(s) 358, 1217
EgeI GGCGCC 1 cut(s) 1250
EheI GGCGCC 1 cut(s) 1250
ErhI CCWWGG 2 cut(s) 358, 1217
FaeI CATG 6 cut(s) 184, 525, 1232, 1248, 1316, 1336
FalI AAGNNNNNCTT 4 cut(s) 1001, 1033, 1020, 1052
FaqI GGGAC 2 cut(s) 782, 1028
FatI CATG 6 cut(s) 180, 521, 1228, 1244, 1312, 1332
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 3 cut(s) 1224, 1242, 1252
FokI GGATG 2 cut(s) 542, 664
Fsp4HI GCNGC 3 cut(s) 1224, 1242, 1252
FspBI CTAG 1 cut(s) 453
GlaI GCGC 4 cut(s) 6, 994, 1110, 1250
GluI GCNGC 3 cut(s) 1224, 1242, 1252
GsaI CCCAGC 3 cut(s) 259, 1071, 1191
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 3 cut(s) 8, 996, 1252
HaeIII GGCC 4 cut(s) 71, 145, 656, 1026
HapII CCGG 2 cut(s) 766, 1279
HhaI GCGC 4 cut(s) 7, 995, 1111, 1251
Hin1I GRCGYC 1 cut(s) 1249
Hin1II CATG 6 cut(s) 184, 525, 1232, 1248, 1316, 1336
Hin6I GCGC 4 cut(s) 5, 993, 1109, 1249
HinP1I GCGC 4 cut(s) 5, 993, 1109, 1249
HinfI GANTC 2 cut(s) 110, 1273
HpaII CCGG 2 cut(s) 766, 1279
HphI GGTGA 2 cut(s) 44, 503
Hpy166II GTNNAC 3 cut(s) 109, 494, 809
Hpy188I TCNGA 5 cut(s) 675, 776, 876, 915, 1327
Hpy188III TCNNGA 5 cut(s) 682, 929, 1004, 1037, 1051
Hpy8I GTNNAC 3 cut(s) 109, 494, 809
HpyAV CCTTC 9 cut(s) 149, 482, 622, 667, 677, 771, 974, 1091, 1096
HpyCH4III ACNGT 2 cut(s) 902, 1102
HpyCH4V TGCA 5 cut(s) 92, 592, 860, 989, 1237
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 685, 694, 990, 1139, 1229, 1238
HpyF3I CTNAG 5 cut(s) 812, 1136, 1167, 1284, 1324
Hsp92I GRCGYC 1 cut(s) 1249
Hsp92II CATG 6 cut(s) 184, 525, 1232, 1248, 1316, 1336
HspAI GCGC 4 cut(s) 5, 993, 1109, 1249
KasI GGCGCC 1 cut(s) 1248
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 2 cut(s) 310, 868
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 2 cut(s) 1235, 1253
LweI GCATC 3 cut(s) 110, 264, 847
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 312, 870
MboI GATC 2 cut(s) 310, 868
MboII GAAGA 5 cut(s) 53, 361, 560, 743, 752
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 900, 1050
MlsI TGGCCA 1 cut(s) 1026
MluCI AATT 5 cut(s) 60, 231, 248, 443, 745
MluNI TGGCCA 1 cut(s) 1026
Mly113I GGCGCC 1 cut(s) 1249
MlyI GAGTC 2 cut(s) 104, 1267
MmeI TCCRAC 1 cut(s) 1101
MnlI CCTC 4 cut(s) 607, 681, 936, 1282
Mox20I TGGCCA 1 cut(s) 1026
MroXI GAANNNNTTC 2 cut(s) 60, 498
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 2 cut(s) 251, 339
Msp20I TGGCCA 1 cut(s) 1026
MspI CCGG 2 cut(s) 766, 1279
MspR9I CCNGG 5 cut(s) 147, 245, 766, 767, 1279
MvaI CCWGG 2 cut(s) 147, 245
MwoI GCNNNNNNNGC 7 cut(s) 98, 685, 694, 990, 1139, 1229, 1238
NarI GGCGCC 1 cut(s) 1249
NciI CCSGG 3 cut(s) 766, 767, 1279
NdeII GATC 2 cut(s) 310, 868
NlaIII CATG 6 cut(s) 184, 525, 1232, 1248, 1316, 1336
NlaIV GGNNCC 4 cut(s) 144, 312, 501, 1250
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 60, 498
PkrI GCNGC 3 cut(s) 1225, 1243, 1253
PleI GAGTC 2 cut(s) 104, 1267
PluTI GGCGCC 1 cut(s) 1252
PpsI GAGTC 2 cut(s) 104, 1267
Psp6I CCWGG 2 cut(s) 145, 243
PspFI CCCAGC 3 cut(s) 255, 1067, 1187
PspGI CCWGG 2 cut(s) 145, 243
PspN4I GGNNCC 4 cut(s) 144, 312, 501, 1250
PspPI GGNCC 4 cut(s) 69, 143, 806, 1201
PstNI CAGNNNCTG 1 cut(s) 995
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 79, 542, 885
RsaNI GTAC 3 cut(s) 78, 541, 884
SaqAI TTAA 2 cut(s) 251, 339
SatI GCNGC 3 cut(s) 1224, 1242, 1252
Sau3AI GATC 2 cut(s) 310, 868
Sau96I GGNCC 4 cut(s) 69, 143, 806, 1201
ScaI AGTACT 1 cut(s) 885
SchI GAGTC 2 cut(s) 104, 1267
ScrFI CCNGG 5 cut(s) 147, 245, 766, 767, 1279
SduI GDGCHC 2 cut(s) 900, 1050
SfaNI GCATC 3 cut(s) 110, 264, 847
SfcI CTRYAG 4 cut(s) 130, 207, 384, 1317
SfoI GGCGCC 1 cut(s) 1250
SinI GGWCC 2 cut(s) 806, 1201
SmaI CCCGGG 1 cut(s) 767
SmlI CTYRAG 3 cut(s) 214, 680, 1049
SmoI CTYRAG 3 cut(s) 214, 680, 1049
Sse9I AATT 5 cut(s) 60, 231, 248, 443, 745
SsiI CCGC 2 cut(s) 241, 1252
SspDI GGCGCC 1 cut(s) 1248
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 145, 243, 764, 765, 1277
StyI CCWWGG 2 cut(s) 358, 1217
TaaI ACNGT 2 cut(s) 902, 1102
TaqI TCGA 6 cut(s) 120, 482, 552, 596, 930, 1005
TasI AATT 5 cut(s) 60, 231, 248, 443, 745
TatI WGTACW 2 cut(s) 540, 883
TauI GCSGC 1 cut(s) 1254
Tru1I TTAA 2 cut(s) 251, 339
Tru9I TTAA 2 cut(s) 251, 339
TscAI CASTG 4 cut(s) 111, 312, 1300, 1312
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 1223, 1241
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 4 cut(s) 197, 535, 895, 934
TspMI CCCGGG 1 cut(s) 765
TspRI CASTG 4 cut(s) 111, 312, 1300, 1312
VpaK11BI GGWCC 2 cut(s) 806, 1201
XapI RAATTY 2 cut(s) 231, 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XmaI CCCGGG 1 cut(s) 765
XmnI GAANNNNTTC 2 cut(s) 60, 498
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.