Rh1AG444700

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000755
Physical Location & Seq
Forward (+)
66491686 .. 66492616
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG444700.1

Sequence Viewer

Length: 834 bp
ATGCATCACGAATTTAACACCTCTTATTGGCTCGGCAATAACTGCTGTCTTTACTTCGTTGTGGAACAGACATATTTGCAATCGAAAACAGCAAGGCTGGAGGAAATGAGATTGAAGGGGCAAGAGATAGAGTTGTGGATGGCCTTCCATTCCCTTCCTCGGAAGCTCAAGAAGCGAATATGGCAATACCAGAAATACAAATGGCAAGAAACTAAAGGTGTTGATGTGGAGAATTTTCTTCACAATCTTCCCCGGGACATCAGAAGGGAAACAACGCAGTATCTATGCTCTGGTCCACTCAGTCAAGTTCCAATGCTTCAAAATATGGATAAACGATTGTTTGATGCAATATGTGATCATCTGAAGCCAGTACTTTACATAGAGCACAGCTTCATACTTCGGAAAGGAGACCCTCTCGATGAGATGTTGTTCATCACTCGTGGCAAAGTATTGACTTACACCACAGAAGGCAATGTAGGCGCTGATTGTCTCGAAAAGGGTGACTTCTATGGCCAAGAACTTCTTGACTGGGTGCTCAAGACTTATCCCAATGCCAGCCTATCCAACCTTCCCTTCTCAACCAAAACAGTCCAAGCGCATACCAAAGTTGAAGTGTTTGCTTTAAGGGCTAATGACTTGAAGAATGTAGTCTCTAAGTTCTGGTGGCTTTTCCCCAGCAATGGTTTGGACCAATCACGCCAACCAAGGGCAGCTCATGCTTTGCAAGCAGCATGGCGCCGCTATAAACAGCTTCAAAAGACTCCCCGGTCTAAGGAGGGCAGTGTTTCTCGCACTGACCATGCTGTAGTCCCAGAACCCATGATAGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

277

Amino Acids

32.43

Weight (kDa)

9.16

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 735
AciI CCGC 1 cut(s) 739
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 2 cut(s) 11, 232
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 736
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 5 cut(s) 27, 159, 680, 706, 772
AgsI TTSAA 5 cut(s) 115, 320, 611, 640, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 4 cut(s) 166, 390, 713, 751
AluI AGCT 4 cut(s) 166, 390, 713, 751
Alw21I GWGCWC 2 cut(s) 387, 537
Alw26I GTCTC 3 cut(s) 402, 494, 655
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 2 cut(s) 141, 511
ApeKI GCWGC 2 cut(s) 710, 728
ApoI RAATTY 2 cut(s) 11, 232
AspLEI GCGC 3 cut(s) 482, 598, 738
AspS9I GGNCC 2 cut(s) 293, 688
AsuC2I CCSGG 3 cut(s) 253, 254, 766
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 2 cut(s) 293, 688
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 1 cut(s) 735
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 387, 537
BbvI GCAGC 2 cut(s) 722, 740
BccI CCATC 1 cut(s) 133
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 3 cut(s) 253, 254, 766
BcoDI GTCTC 3 cut(s) 402, 494, 655
BfmI CTRYAG 1 cut(s) 804
BfoI RGCGCY 2 cut(s) 483, 739
BisI GCNGC 3 cut(s) 711, 729, 739
BlsI GCNGC 3 cut(s) 712, 730, 740
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 3 cut(s) 253, 254, 766
Bme18I GGWCC 2 cut(s) 293, 688
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 293, 688
BmiI GGNNCC 1 cut(s) 737
BmrFI CCNGG 3 cut(s) 253, 254, 766
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 13, 334
BmuI ACTGGG 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 152, 521
BpuMI CCSGG 3 cut(s) 253, 254, 766
BsaHI GRCGYC 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 5 cut(s) 158, 251, 252, 704, 764
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 159, 680, 706, 772
Bse1I ACTGG 2 cut(s) 368, 533
Bse3DI GCAATG 2 cut(s) 478, 685
BseDI CCNNGG 5 cut(s) 158, 251, 252, 704, 764
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 27, 159, 680, 706, 772
BseMI GCAATG 2 cut(s) 478, 685
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 2 cut(s) 368, 533
BseXI GCAGC 2 cut(s) 722, 740
BseYI CCCAGC 1 cut(s) 674
BshFI GGCC 2 cut(s) 143, 513
BshNI GGYRCC 1 cut(s) 735
BsiHKAI GWGCWC 2 cut(s) 387, 537
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 2 cut(s) 253, 766
BslFI GGGAC 2 cut(s) 269, 794
BslI CCNNNNNNNGG 5 cut(s) 27, 159, 680, 706, 772
BsmAI GTCTC 3 cut(s) 402, 494, 655
BsmFI GGGAC 2 cut(s) 269, 794
BsnI GGCC 2 cut(s) 143, 513
Bso31I GGTCTC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 387, 537
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 739
BspANI GGCC 2 cut(s) 143, 513
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 735
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 478, 685
BsrI ACTGG 2 cut(s) 368, 533
BssECI CCNNGG 5 cut(s) 158, 251, 252, 704, 764
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 736
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 704
Bst2BI CACGAG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 736
BstAPI GCANNNNNTGC 2 cut(s) 42, 716
BstC8I GCNNGC 2 cut(s) 556, 726
BstDEI CTNAG 3 cut(s) 299, 654, 771
BstF5I GGATG 1 cut(s) 144
BstH2I RGCGCY 2 cut(s) 483, 739
BstHHI GCGC 3 cut(s) 482, 598, 738
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 3 cut(s) 402, 494, 655
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 716, 725
BstSCI CCNGG 3 cut(s) 251, 252, 764
BstSFI CTRYAG 1 cut(s) 804
BstV1I GCAGC 2 cut(s) 722, 740
BsuRI GGCC 2 cut(s) 143, 513
BtsCI GGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 787, 792
Cac8I GCNNGC 2 cut(s) 556, 726
CfoI GCGC 3 cut(s) 482, 598, 738
Cfr13I GGNCC 2 cut(s) 293, 688
Cfr9I CCCGGG 1 cut(s) 252
Csp6I GTAC 1 cut(s) 371
CviAII CATG 4 cut(s) 716, 732, 800, 820
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 3 cut(s) 299, 654, 771
DinI GGCGCC 1 cut(s) 737
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 766
DseDI GACNNNNNNGTC 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 704
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 293, 688
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 704
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 737
EheI GGCGCC 1 cut(s) 737
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 4 cut(s) 719, 735, 803, 823
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 507, 539
FaqI GGGAC 2 cut(s) 269, 794
FatI CATG 4 cut(s) 715, 731, 799, 819
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 711, 729, 739
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 711, 729, 739
GlaI GCGC 3 cut(s) 481, 597, 737
GluI GCNGC 3 cut(s) 711, 729, 739
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 2 cut(s) 483, 739
HaeIII GGCC 2 cut(s) 143, 513
HapII CCGG 2 cut(s) 253, 766
HhaI GCGC 3 cut(s) 482, 598, 738
Hin1I GRCGYC 1 cut(s) 736
Hin1II CATG 4 cut(s) 719, 735, 803, 823
Hin6I GCGC 3 cut(s) 480, 596, 736
HinP1I GCGC 3 cut(s) 480, 596, 736
HinfI GANTC 1 cut(s) 760
HpaII CCGG 2 cut(s) 253, 766
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 4 cut(s) 162, 263, 363, 402
Hpy188III TCNNGA 6 cut(s) 8, 169, 416, 491, 524, 538
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 7 cut(s) 109, 154, 164, 258, 461, 578, 583
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 4 cut(s) 4, 79, 347, 724
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 716, 725
HpyF3I CTNAG 3 cut(s) 299, 654, 771
Hsp92I GRCGYC 1 cut(s) 736
Hsp92II CATG 4 cut(s) 719, 735, 803, 823
HspAI GCGC 3 cut(s) 480, 596, 736
KasI GGCGCC 1 cut(s) 735
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 722, 740
LweI GCATC 2 cut(s) 13, 334
MaeIII GTNAC 1 cut(s) 500
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 230, 239, 652
MhlI GDGCHC 2 cut(s) 387, 537
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 2 cut(s) 11, 232
MluNI TGGCCA 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 736
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 5 cut(s) 31, 94, 168, 423, 769
Mox20I TGGCCA 1 cut(s) 513
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 513
MseI TTAA 2 cut(s) 15, 623
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 2 cut(s) 253, 766
MspR9I CCNGG 3 cut(s) 253, 254, 766
MwoI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 716, 725
NarI GGCGCC 1 cut(s) 736
NciI CCSGG 3 cut(s) 253, 254, 766
NdeII GATC 1 cut(s) 355
NlaIII CATG 4 cut(s) 719, 735, 803, 823
NlaIV GGNNCC 1 cut(s) 737
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 712, 730, 740
PleI GAGTC 1 cut(s) 754
PluTI GGCGCC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 674
PspN4I GGNNCC 1 cut(s) 737
PspPI GGNCC 2 cut(s) 293, 688
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 15, 623
SatI GCNGC 3 cut(s) 711, 729, 739
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 293, 688
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 3 cut(s) 253, 254, 766
SduI GDGCHC 2 cut(s) 387, 537
SetI ASST 7 cut(s) 23, 168, 220, 392, 570, 715, 753
SfaNI GCATC 2 cut(s) 13, 334
SfcI CTRYAG 1 cut(s) 804
SfoI GGCGCC 1 cut(s) 737
SinI GGWCC 2 cut(s) 293, 688
SmaI CCCGGG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 167, 536
SmoI CTYRAG 2 cut(s) 167, 536
Sse9I AATT 2 cut(s) 11, 232
SsiI CCGC 1 cut(s) 739
SspDI GGCGCC 1 cut(s) 735
StyD4I CCNGG 3 cut(s) 251, 252, 764
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 3 cut(s) 83, 417, 492
TasI AATT 2 cut(s) 11, 232
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 741
Tru1I TTAA 2 cut(s) 15, 623
Tru9I TTAA 2 cut(s) 15, 623
TscAI CASTG 2 cut(s) 787, 799
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 710, 728
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 2 cut(s) 382, 421
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 2 cut(s) 787, 799
VpaK11BI GGWCC 2 cut(s) 293, 688
XapI RAATTY 2 cut(s) 11, 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmaI CCCGGG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.