Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002387.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

28329 .. 30278

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002387.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgagtaatgtagaagcactgaactccgactatggagtcttgggttccaagaagaaagttcttggtccccaagagcttcggagatggaataacatgtttctggttttgtgtgctattgcactgtcactggatcctctgttctgttatacacttgtttctgatgaggataacaagtgcctcagattggacagaaaactgggaatcatagctgttattttgcacttcatcgtcgatttcttctatatactacacatcatttttcagtttcgtgcaagtgttgctagtctttcttctcaagcatctggaaaagtctttcatccaaaacagacatatttacagtcaaaaactgcaagatctgcagaaatgagagtgaaggaacgcgagagagaacactggatggccttctatacaattcctcagcatctcaagaagcgtataagggaataccgaaaagaccaatggcaagaaaacataggtataaacatggacaactttctgctcagtcttcccagggacattaggactgatacaaagcgatatctttgctttggggctattcgtggagtgccattctttgaagccttggataagcaagtgctggatgcaatgtgtgatagtctcaagccggtactctataaagaagaaagttacattgttcgggaaggagaaccaatggatgcgaagctcttcataatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

232

Amino Acids

27.13

Weight (kDa)

9.02

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	2 cut(s)	125, 138
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	509
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	76, 209, 685
AluI	AGCT	3 cut(s)	76, 209, 685
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	125, 138
AoxI	GGCC	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	2 cut(s)	78, 391
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	46, 67, 132
BmrFI	CCNGG	1 cut(s)	511
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	4 cut(s)	308, 430, 592, 667
BmuI	ACTGGG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	3 cut(s)	279, 410, 605
BsaJI	CCNNGG	3 cut(s)	509, 510, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	3 cut(s)	132, 201, 398
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	509, 510, 582
BseGI	GGATG	4 cut(s)	316, 402, 607, 682
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	3 cut(s)	193, 431, 514
BseNI	ACTGG	3 cut(s)	132, 201, 398
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	51, 527
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	51, 527
BsnI	GGCC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	130, 353
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	192, 430, 513
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	46, 67, 132
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	125, 138
BspQI	GCTCTTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	3 cut(s)	132, 201, 398
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	509, 510, 582
BssMI	GATC	2 cut(s)	130, 353
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	123, 339
Bst6I	CTCTTC	1 cut(s)	692
BstAPI	GCANNNNNTGC	2 cut(s)	278, 356
BstDEI	CTNAG	3 cut(s)	179, 417, 500
BstF5I	GGATG	4 cut(s)	316, 402, 607, 682
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	133, 356
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	130, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 356
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	130, 353
BstYI	RGATCY	2 cut(s)	130, 353
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	4 cut(s)	316, 402, 607, 682
BtsIMutI	CAGTG	4 cut(s)	17, 119, 125, 391
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	2 cut(s)	94, 484
CviJI	RGCY	7 cut(s)	76, 209, 401, 554, 581, 625, 685
CviKI_1	RGCY	7 cut(s)	76, 209, 401, 554, 581, 625, 685
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	3 cut(s)	179, 417, 500
DpnI	GATC	2 cut(s)	132, 355
DpnII	GATC	2 cut(s)	130, 353
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	509
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	2 cut(s)	97, 487
FaqI	GGGAC	2 cut(s)	51, 527
FatI	CATG	2 cut(s)	93, 483
FokI	GGATG	4 cut(s)	303, 409, 614, 689
FspBI	CTAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	2 cut(s)	97, 487
HinfI	GANTC	2 cut(s)	36, 201
HpaII	CCGG	1 cut(s)	626
Hpy188I	TCNGA	4 cut(s)	28, 81, 160, 182
Hpy188III	TCNNGA	3 cut(s)	303, 427, 659
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	367, 412, 656
HpyCH4III	ACNGT	2 cut(s)	123, 339
HpyCH4V	TGCA	6 cut(s)	119, 220, 272, 350, 359, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 356
HpyF3I	CTNAG	3 cut(s)	179, 417, 500
Hsp92II	CATG	2 cut(s)	97, 487
Kzo9I	GATC	2 cut(s)	130, 353
LguI	GCTCTTC	1 cut(s)	692
LpnPI	CCDG	9 cut(s)	86, 113, 182, 288, 379, 496, 523, 584, 639
LweI	GCATC	4 cut(s)	308, 430, 592, 667
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	123, 647
MalI	GATC	2 cut(s)	132, 355
MboI	GATC	2 cut(s)	130, 353
MboII	GAAGA	6 cut(s)	64, 229, 282, 497, 653, 679
MflI	RGATCY	2 cut(s)	130, 353
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	144, 157, 188, 426
MroXI	GAANNNNTTC	1 cut(s)	686
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	278, 356
NdeII	GATC	2 cut(s)	130, 353
NlaIII	CATG	2 cut(s)	97, 487
NlaIV	GGNNCC	3 cut(s)	46, 67, 132
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	97
PasI	CCCWGGG	1 cut(s)	510
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	46, 67, 132
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	130, 353
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SapI	GCTCTTC	1 cut(s)	692
Sau3AI	GATC	2 cut(s)	130, 353
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	511
SetI	ASST	4 cut(s)	78, 211, 478, 687
SfaNI	GCATC	4 cut(s)	308, 430, 592, 667
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	3 cut(s)	294, 425, 620
SmoI	CTYRAG	3 cut(s)	294, 425, 620
Sse9I	AATT	1 cut(s)	411
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	123, 339
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	201
TscAI	CASTG	4 cut(s)	24, 126, 132, 398
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	3 cut(s)	214, 305, 679
TspRI	CASTG	4 cut(s)	24, 126, 132, 398
VpaK11BI	GGWCC	1 cut(s)	65
XceI	RCATGY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.