Rh1CG413500

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67566336 .. 67568243
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG413500.1

Sequence Viewer

Length: 849 bp
ATGGGCTGGATCCTTCATTCAAGCCATAACAAGCAGTCCGCCAGTATATTGGATCTGAAAGAAATCCAGGATGAGTACCGGAAAAAGATTCCCCTTGTTCTGTGCGTTATCTCCTTCTCACTGGATCCTTTATTTTGTTATCTCCTTGTGTTTAATACGGAGAAGAACTGCCTTGGATTGGACAAAACATTAGTAGGGGTCATAGCTAGTATTTTCCGATCTGTCATTGATCTCTGTTATATGGTGTATCGGGTCCGCGCTACTGTTGTTGCTCTTTCTTCCCCAGATTATGCTTGGACACCAAAATCATGGTTGCACTTCGTAGTTGACATACTCGTAATTCTTCCTCTTCCACAGGTGCTGGTGTTCTATGTCATTCCAAAACTAAATGACCCAAGGGTTTTCAATGCGACAGCGTTATTGAGTTTTATTTTTACCATTCAATATGTGCTAAGGGTTGCTCGAACCTACTCTCTGCTAAAAAAAGCTATACGTGCTTGCTGCATCCAGCTCAAGTTATCTACCTGGGTGAATCTCAGTTTTCTCATGCTGGCCGGTCATGTCCTTGGAGCATTTTGGTATTTGTTTTCTATAGAAAGGAAAGCAACTTGCTGGATGGAAGCATGTAAACATCTTGGTGTTAGTTGTTCTTTGTACTGTGATGACACCTTAAGATCTGGCACACTTCTGAATGATTCTTGCTCTACAAATTCCACACTTTTTGATTTTGGAATATACTCTGATGCCCTTGAATCTGGAGTTGTTGATTCAACTCATTTTTTACAAAGGATTTCTTACGGCTTTTGGTGGGGACTGCAAAATCTCAGGTCTGCACATTCGATCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

282

Amino Acids

32.08

Weight (kDa)

8.59

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 258
AciI CCGC 2 cut(s) 39, 256
AclWI GGATC 6 cut(s) 4, 17, 60, 119, 132, 835
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 1 cut(s) 709
AfaI GTAC 2 cut(s) 77, 656
AfiI CCNNNNNNNGG 1 cut(s) 178
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 5 cut(s) 21, 406, 443, 752, 771
AjnI CCWGG 2 cut(s) 66, 524
AluBI AGCT 3 cut(s) 206, 488, 511
AluI AGCT 3 cut(s) 206, 488, 511
AlwI GGATC 6 cut(s) 4, 17, 60, 119, 132, 835
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 1 cut(s) 501
ApoI RAATTY 1 cut(s) 709
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 2 cut(s) 9, 124
BbvI GCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 610
BceAI ACGGC 1 cut(s) 814
BciT130I CCWGG 2 cut(s) 68, 526
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 670
BglII AGATCT 1 cut(s) 674
BisI GCNGC 1 cut(s) 502
BlsI GCNGC 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 68, 526
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 3 cut(s) 11, 126, 254
BmrFI CCNGG 2 cut(s) 68, 526
BmsI GCATC 2 cut(s) 513, 733
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 497
BsaAI YACGTR 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 172, 395, 525, 565
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 2 cut(s) 42, 126
BseBI CCWGG 2 cut(s) 68, 526
BseDI CCNNGG 4 cut(s) 172, 395, 525, 565
BseGI GGATG 3 cut(s) 76, 504, 621
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 550, 838
BseNI ACTGG 2 cut(s) 42, 126
BseXI GCAGC 1 cut(s) 488
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 554
BsiSI CCGG 2 cut(s) 79, 555
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 1 cut(s) 554
Bsp143I GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
BspACI CCGC 2 cut(s) 39, 256
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 2 cut(s) 549, 837
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 11, 126, 254
BspPI GGATC 6 cut(s) 4, 17, 60, 119, 132, 835
BspTI CTTAAG 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 2 cut(s) 42, 126
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 4 cut(s) 172, 395, 525, 565
BssMI GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
BssT1I CCWWGG 3 cut(s) 172, 395, 565
Bst2UI CCWGG 2 cut(s) 68, 526
Bst4CI ACNGT 2 cut(s) 265, 659
Bst6I CTCTTC 1 cut(s) 354
BstAFI CTTAAG 1 cut(s) 670
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 499, 552
BstDEI CTNAG 3 cut(s) 452, 536, 824
BstF5I GGATG 3 cut(s) 76, 504, 621
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 7 cut(s) 12, 55, 127, 221, 232, 677, 843
BstMBI GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 2 cut(s) 68, 526
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 66, 524
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 488
BstX2I RGATCY 4 cut(s) 9, 52, 124, 674
BstXI CCANNNNNNTGG 2 cut(s) 49, 309
BstYI RGATCY 4 cut(s) 9, 52, 124, 674
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 3 cut(s) 76, 504, 621
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 499, 552
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 76, 655
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 4 cut(s) 309, 547, 560, 624
CviJI RGCY 7 cut(s) 6, 24, 206, 488, 511, 554, 801
CviKI_1 RGCY 7 cut(s) 6, 24, 206, 488, 511, 554, 801
CviQI GTAC 2 cut(s) 76, 655
DdeI CTNAG 3 cut(s) 452, 536, 824
DpnI GATC 7 cut(s) 11, 54, 126, 220, 231, 676, 842
DpnII GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 3 cut(s) 172, 395, 565
Eco47I GGWCC 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 66, 524
EcoT14I CCWWGG 3 cut(s) 172, 395, 565
ErhI CCWWGG 3 cut(s) 172, 395, 565
FaeI CATG 4 cut(s) 312, 550, 563, 627
FalI AAGNNNNNCTT 2 cut(s) 778, 810
FaqI GGGAC 1 cut(s) 825
FatI CATG 4 cut(s) 308, 546, 559, 623
Fnu4HI GCNGC 1 cut(s) 502
FokI GGATG 3 cut(s) 83, 491, 628
Fsp4HI GCNGC 1 cut(s) 502
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 1 cut(s) 554
HapII CCGG 2 cut(s) 79, 555
HhaI GCGC 1 cut(s) 260
Hin1II CATG 4 cut(s) 312, 550, 563, 627
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 5 cut(s) 88, 532, 695, 752, 767
HpaII CCGG 2 cut(s) 79, 555
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 328, 629
Hpy188I TCNGA 4 cut(s) 57, 218, 690, 742
Hpy188III TCNNGA 1 cut(s) 756
Hpy8I GTNNAC 2 cut(s) 328, 629
HpyAV CCTTC 2 cut(s) 23, 124
HpyCH4III ACNGT 2 cut(s) 265, 659
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 316, 504, 817, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 3 cut(s) 452, 536, 824
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 4 cut(s) 312, 550, 563, 627
HspAI GCGC 1 cut(s) 258
Kzo9I GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
LmnI GCTCC 1 cut(s) 569
Lsp1109I GCAGC 1 cut(s) 488
LweI GCATC 2 cut(s) 513, 733
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 493
MalI GATC 7 cut(s) 11, 54, 126, 220, 231, 676, 842
MboI GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
MboII GAAGA 4 cut(s) 175, 270, 335, 341
MflI RGATCY 4 cut(s) 9, 52, 124, 674
MluCI AATT 2 cut(s) 339, 709
MnlI CCTC 1 cut(s) 357
MseI TTAA 2 cut(s) 153, 671
MslI CAYNNNNRTG 1 cut(s) 636
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 2 cut(s) 79, 555
MspR9I CCNGG 2 cut(s) 68, 526
MvaI CCWGG 2 cut(s) 68, 526
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
NlaIII CATG 4 cut(s) 312, 550, 563, 627
NlaIV GGNNCC 3 cut(s) 11, 126, 254
NspI RCATGY 1 cut(s) 627
PfeI GAWTC 5 cut(s) 88, 532, 695, 752, 767
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 66, 524
PspGI CCWGG 2 cut(s) 66, 524
PspN4I GGNNCC 3 cut(s) 11, 126, 254
PspPI GGNCC 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 4 cut(s) 9, 52, 124, 674
RsaI GTAC 2 cut(s) 77, 656
RsaNI GTAC 2 cut(s) 76, 655
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 2 cut(s) 153, 671
SatI GCNGC 1 cut(s) 502
Sau3AI GATC 7 cut(s) 9, 52, 124, 218, 229, 674, 840
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 68, 526
SetI ASST 9 cut(s) 208, 360, 470, 490, 496, 513, 527, 671, 830
SfaNI GCATC 2 cut(s) 513, 733
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 512, 670
SmoI CTYRAG 2 cut(s) 512, 670
Sse9I AATT 2 cut(s) 339, 709
SsiI CCGC 2 cut(s) 39, 256
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 66, 524
StyI CCWWGG 3 cut(s) 172, 395, 565
TaaI ACNGT 2 cut(s) 265, 659
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 463, 839
TasI AATT 2 cut(s) 339, 709
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 5 cut(s) 88, 532, 695, 752, 767
Tru1I TTAA 2 cut(s) 153, 671
Tru9I TTAA 2 cut(s) 153, 671
TscAI CASTG 1 cut(s) 126
TseI GCWGC 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 709
XceI RCATGY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.