Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

75526 .. 76074

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgaatcaacgattgtttgacgcaatctgtgatcacttgaagccggtgctttacatagagcacagctacataatgcgaaagggagaccctctcgatgagatgttgtttatcactcgcggcaaagtgttgacttacaccacagaaggcaatgcaagcgatgtttgtcttgacaagggtgacttctatggccaagaacttcttgactgggtgctcaggaatcccaatcccagcctatccaaccttcccttctcatccaaaacagtccaagcacataccaaagttgaagtgtttgctttaagggccaatgacttgaagaatgtagtctctaagttctggtggcttttccacactagctccagtttggagcaatggcgcgaaccaagggcagctcaggctttgcaagcagcatggcgccgatataaacagcttccaaaaactccccggtctaaggagggcagtgtctctgccgcccaccgcactgcagacctgcagtcccagaaaccatcgtatcatcatagagatgtaagcacattaattagttcaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

182

Amino Acids

20.98

Weight (kDa)

9.39

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	2 cut(s)	117, 375
AciI	CCGC	3 cut(s)	117, 468, 475
AcoI	YGGCCR	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	40, 284, 313, 543
AhdI	GACNNNNNGTC	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	4 cut(s)	66, 354, 389, 427
AluI	AGCT	4 cut(s)	66, 354, 389, 427
Alw21I	GWGCWC	2 cut(s)	63, 213
Alw26I	GTCTC	3 cut(s)	78, 328, 466
AoxI	GGCC	2 cut(s)	187, 300
ApeKI	GCWGC	2 cut(s)	386, 404
AseI	ATTAAT	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	375, 414
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	63, 213
BbvI	GCAGC	2 cut(s)	398, 416
BccI	CCATC	1 cut(s)	511
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	78, 328, 466
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	480, 488
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	4 cut(s)	118, 387, 405, 468
BlsI	GCNGC	4 cut(s)	119, 388, 406, 469
Bme1390I	CCNGG	1 cut(s)	442
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	1 cut(s)	340
Bpu10I	CCTNAGC	2 cut(s)	212, 390
BpuMI	CCSGG	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	380, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	209, 357
Bse3DI	GCAATG	2 cut(s)	154, 374
BseDI	CCNNGG	2 cut(s)	380, 440
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	154, 374
BseMII	CTCAG	2 cut(s)	226, 404
BseNI	ACTGG	2 cut(s)	209, 357
BseXI	GCAGC	2 cut(s)	398, 416
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	2 cut(s)	117, 375
BshFI	GGCC	2 cut(s)	189, 302
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	63, 213
BsiSI	CCGG	2 cut(s)	44, 442
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	78, 328, 466
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	189, 302
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	63, 213
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	117, 468, 475
BspANI	GGCC	2 cut(s)	189, 302
BspCNI	CTCAG	2 cut(s)	225, 403
BspFNI	CGCG	2 cut(s)	117, 375
BspLI	GGNNCC	1 cut(s)	413
BspMAI	CTGCAG	2 cut(s)	484, 492
BspMI	ACCTGC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	154, 374
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	209, 357
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	380, 440
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	154, 402
BstDEI	CTNAG	4 cut(s)	212, 327, 390, 447
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	2 cut(s)	117, 375
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	375, 414
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	3 cut(s)	78, 328, 466
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 299, 392, 401
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	2 cut(s)	480, 488
BstUI	CGCG	2 cut(s)	117, 375
BstV1I	GCAGC	2 cut(s)	398, 416
BsuRI	GGCC	2 cut(s)	189, 302
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	2 cut(s)	463, 477
BtsIMutI	CAGTG	2 cut(s)	463, 477
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	154, 402
CfoI	GCGC	2 cut(s)	375, 414
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	212, 327, 390, 447
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	411
FaiI	YATR	7 cut(s)	56, 71, 186, 273, 409, 420, 516
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 183, 215
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	118, 387, 405, 468
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	4 cut(s)	118, 387, 405, 468
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	2 cut(s)	374, 413
GluI	GCNGC	4 cut(s)	118, 387, 405, 468
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	189, 302
HapII	CCGG	2 cut(s)	44, 442
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	375, 414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	2 cut(s)	373, 412
HinP1I	GCGC	2 cut(s)	373, 412
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	4, 217
HpaII	CCGG	2 cut(s)	44, 442
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	5 cut(s)	92, 167, 200, 214, 543
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	137, 251, 256
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	152, 400, 482, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 299, 392, 401
HpyF3I	CTNAG	4 cut(s)	212, 327, 390, 447
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	2 cut(s)	373, 412
KasI	GGCGCC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	359, 364
Lsp1109I	GCAGC	2 cut(s)	398, 416
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	63, 213
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	1 cut(s)	534
MluNI	TGGCCA	1 cut(s)	189
Mly113I	GGCGCC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	2 cut(s)	99, 445
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	296, 533
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	189
MspI	CCGG	2 cut(s)	44, 442
MspR9I	CCNGG	1 cut(s)	442
MvnI	CGCG	2 cut(s)	117, 375
MwoI	GCNNNNNNNGC	4 cut(s)	153, 299, 392, 401
NarI	GGCGCC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	4, 217
PkrI	GCNGC	4 cut(s)	119, 388, 406, 469
PluTI	GGCGCC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	300
PstI	CTGCAG	2 cut(s)	484, 492
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	296, 533
SatI	GCNGC	4 cut(s)	118, 387, 405, 468
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	63, 213
SetI	ASST	6 cut(s)	68, 243, 356, 391, 429, 489
SfcI	CTRYAG	2 cut(s)	480, 488
SfoI	GGCGCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	117, 468, 475
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	534
TauI	GCSGC	2 cut(s)	120, 470
TfiI	GAWTC	2 cut(s)	4, 217
Tru1I	TTAA	2 cut(s)	296, 533
Tru9I	TTAA	2 cut(s)	296, 533
TscAI	CASTG	2 cut(s)	463, 484
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	386, 404
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	463, 484
VspI	ATTAAT	1 cut(s)	533
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.