RchiOBHm_Chr1g0380281

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000755
Physical Location & Seq
Forward (+)
65977748 .. 65979123
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60357

Sequence Viewer

Length: 318 bp
ATGCTGTTTTCATTTCTGTTTCTGGTTTGGTACTATTTTCATCTTTTTTTTGGAAATATGCAGACATATTTACAGTCAAAAACTGCAAGATCTACAGAAATGAGAGTGAAGGAACGCGAGAGAGAACACTGGATGGCCTTCTATACAATTCCTCAGCATCTCAAGAAGCGTATAAGGGAATACCGAAAAGACCAATGGCAAGAAAACATAGGTATAAACATGGACAACTTTCTGCTCAGTCTTCCCAGGGACATTAGGACTGATACAAAGCGATATCTTTGCTTTGGGCCGGGCTATTCGTGGAGTGCCATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

105

Amino Acids

13.05

Weight (kDa)

9.67

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AfaI GTAC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 245
AoxI GGCC 2 cut(s) 135, 287
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 1 cut(s) 247
BcnI CCSGG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 247, 291
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 247, 291
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 245, 246
Bse1I ACTGG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 245, 246
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 167, 250
BseNI ACTGG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 137, 289
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 137, 289
Bsp143I GATC 1 cut(s) 89
BspANI GGCC 2 cut(s) 137, 289
BspCNI CTCAG 2 cut(s) 166, 249
BspFNI CGCG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 245, 246
BssMI GATC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 153, 236
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 245, 289
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 137, 289
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 220
CviJI RGCY 3 cut(s) 137, 289, 294
CviKI_1 RGCY 3 cut(s) 137, 289, 294
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 153, 236
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eco32I GATATC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 245
EcoRV GATATC 1 cut(s) 275
FaeI CATG 1 cut(s) 223
FaiI YATR 7 cut(s) 59, 67, 144, 173, 209, 215, 221
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 145
HaeIII GGCC 2 cut(s) 137, 289
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 223
HpaII CCGG 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 103, 148
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 61, 86
HpyF3I CTNAG 2 cut(s) 153, 236
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 8, 115, 232, 259, 303
LweI GCATC 1 cut(s) 166
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 89
MluCI AATT 1 cut(s) 147
MnlI CCTC 1 cut(s) 162
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 247, 291
MvaI CCWGG 1 cut(s) 247
MvnI CGCG 1 cut(s) 117
NciI CCSGG 1 cut(s) 291
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 223
PasI CCCWGGG 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 247, 291
SetI ASST 1 cut(s) 214
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 245, 289
TaaI ACNGT 1 cut(s) 75
TasI AATT 1 cut(s) 147
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.