Rmu_sc0005335.1_g000010

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005335.1
OG0000755
Physical Location & Seq
Forward (+)
28073 .. 30741
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005335.1_g000010.1.cds

Sequence Viewer

Length: 1263 bp
atgtcgattcaactttcacagactggtgatatagaagaaaatggtgaagagcgaattcagagtgttaatggtcctaattcaagggaaagtttagcatcagtgcactctgctgtgaataaggtctatagagctatggggcctggttataaagggctaaagagttttgggaaaatcatgaaaatttattatggagttttgtctataggcttgagttccaatgataaaattcttcgccgccagaaattaaaccagcaaaggtggaataagatgcttcttgttctgtgtgtcatcgcgctctcactggatcctttgttttgttatattcttgaggttaataatgagaagaactgccttggattgaacagaacattaggagctatagctattgttttgcgatttgtggttgatttcttttttgtgttctatatcatttatcaatttcgtgctagcattgccactctttcgtctcaatcatcgagagaaggtgaaccggttccagatactcgagcaagagcatggagatatttgttgttgtacttcctatttgacatacttgtaattctaccacttccacaggcggtagtttttgctatcattctacgaataaataactcgagggtattccatgcaatacagtcattgtactttatagttatctgtcaatttgtgctaagggttcttcgaatctgctccttgttaaaaaaagctatacggtcttctggcgtccgtctcgaaactgcatgggctaaagctgccttcaatctctttctttatgtgcttgccagtcatgttccaatgcttcaaaatatggataaacaattgctcgatgcaatatgtgatcatctaaagccagtgctttacataaagcgcaacttcatattccggaaaggagatcctttggatgagatgttgttcatcacttgcggtaagttattgacttacaccaccgcaaacagtgcaggtgctgattgtctcggaaaggacgacttctatggccaagaacttcttgactgggtgctaaggacttattccaatcccggcgtatccaaccttcccttctctaccaaaacagtccaagcgcatacggatgttgaagtgtttgctctaagggccaatgacttgaaaaatgtagtgtctaagttctggtggcttttccccagctctgggttggagcaagcacgcaagccaagggcagctcaggctttgcaagcagcttggcgccgccataaataccgtcaaagactcgccaatctaaccgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

420

Amino Acids

47.88

Weight (kDa)

9.71

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AarI CACCTGC 1 cut(s) 950
Acc36I ACCTGC 1 cut(s) 950
AccB1I GGYRCC 1 cut(s) 1218
AccII CGCG 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 5 cut(s) 235, 578, 924, 948, 1222
AclWI GGATC 3 cut(s) 299, 312, 887
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 3 cut(s) 54, 180, 225
AcyI GRCGYC 2 cut(s) 723, 1219
AfaI GTAC 2 cut(s) 536, 644
AfiI CCNNNNNNNGG 2 cut(s) 1163, 1164
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 7 cut(s) 11, 81, 361, 760, 803, 1094, 1123
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 1040, 1072
AluBI AGCT 8 cut(s) 131, 377, 383, 707, 752, 1161, 1196, 1214
AluI AGCT 8 cut(s) 131, 377, 383, 707, 752, 1161, 1196, 1214
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 471, 734, 977
Alw44I GTGCAC 1 cut(s) 101
AlwI GGATC 3 cut(s) 299, 312, 887
AlwNI CAGNNNCTG 1 cut(s) 965
Ama87I CYCGRG 2 cut(s) 504, 613
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 3 cut(s) 137, 994, 1110
ApaLI GTGCAC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 752, 1193, 1211
ApoI RAATTY 3 cut(s) 54, 180, 225
AsiGI ACCGGT 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 4 cut(s) 295, 870, 1081, 1221
AspS9I GGNCC 3 cut(s) 71, 137, 1110
AsuC2I CCSGG 1 cut(s) 1038
AsuHPI GGTGA 3 cut(s) 38, 56, 497
AsuII TTCGAA 1 cut(s) 682
AsuNHI GCTAGC 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 504, 613
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 105
BalI TGGCCA 1 cut(s) 996
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 1218
BarI GAAGNNNNNNTAC 2 cut(s) 1035, 1067
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 739, 1205, 1223
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 1054
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 1 cut(s) 1038
BcoDI GTCTC 3 cut(s) 471, 734, 977
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 3 cut(s) 124, 201, 378
BfoI RGCGCY 1 cut(s) 1222
BfuAI ACCTGC 1 cut(s) 950
BfuI GTATCC 1 cut(s) 1054
BisI GCNGC 5 cut(s) 235, 753, 1194, 1212, 1222
BlsI GCNGC 5 cut(s) 236, 754, 1195, 1213, 1223
Bme1390I CCNGG 2 cut(s) 141, 1038
Bme18I GGWCC 1 cut(s) 71
BmeT110I CYCGRG 2 cut(s) 504, 613
BmgT120I GGNCC 3 cut(s) 71, 137, 1110
BmiI GGNNCC 4 cut(s) 138, 306, 495, 1220
BmrFI CCNGG 2 cut(s) 141, 1038
BmrI ACTGGG 1 cut(s) 1021
BmsI GCATC 3 cut(s) 104, 258, 817
BmtI GCTAGC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 1021
BpiI GAAGAC 1 cut(s) 708
Bpu10I CCTNAGC 3 cut(s) 671, 1019, 1197
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 229, 347
BpuMI CCSGG 1 cut(s) 1038
BsaHI GRCGYC 2 cut(s) 723, 1219
BsaJI CCNNGG 2 cut(s) 352, 1187
BsaWI WCCGGW 2 cut(s) 490, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 1163, 1164
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 5 cut(s) 28, 306, 783, 851, 1016
Bse3DI GCAATG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 352, 1187
BseGI GGATG 2 cut(s) 907, 1093
BseLI CCNNNNNNNGG 2 cut(s) 1163, 1164
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 1211
BseNI ACTGG 5 cut(s) 28, 306, 783, 851, 1016
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 3 cut(s) 739, 1205, 1223
BseYI CCCAGC 1 cut(s) 1157
BsgI GTGCAG 1 cut(s) 978
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 139, 996, 1112
BshNI GGYRCC 1 cut(s) 1218
BshTI ACCGGT 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 504, 613
BsiSI CCGG 3 cut(s) 491, 883, 1038
BslI CCNNNNNNNGG 2 cut(s) 1163, 1164
BsmAI GTCTC 3 cut(s) 471, 734, 977
BsmBI CGTCTC 2 cut(s) 471, 734
BsnI GGCC 3 cut(s) 139, 996, 1112
BsoBI CYCGRG 2 cut(s) 504, 613
Bsp119I TTCGAA 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 3 cut(s) 304, 838, 892
BspACI CCGC 5 cut(s) 235, 578, 924, 948, 1222
BspANI GGCC 3 cut(s) 139, 996, 1112
BspCNI CTCAG 1 cut(s) 1210
BspEI TCCGGA 1 cut(s) 882
BspFNI CGCG 1 cut(s) 293
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 4 cut(s) 138, 306, 495, 1220
BspMI ACCTGC 1 cut(s) 950
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 3 cut(s) 299, 312, 887
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 1218
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 5 cut(s) 28, 306, 783, 851, 1016
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 2 cut(s) 352, 1187
BssMI GATC 3 cut(s) 304, 838, 892
BssNI GRCGYC 2 cut(s) 723, 1219
BssT1I CCWWGG 2 cut(s) 352, 1187
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 6 cut(s) 636, 714, 956, 1072, 1235, 1258
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 723, 1219
BstAPI GCANNNNNTGC 1 cut(s) 956
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 6 cut(s) 448, 780, 1176, 1180, 1184, 1209
BstDEI CTNAG 5 cut(s) 671, 1019, 1106, 1137, 1197
BstF5I GGATG 2 cut(s) 907, 1093
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 1222
BstHHI GCGC 4 cut(s) 295, 870, 1081, 1221
BstKTI GATC 3 cut(s) 307, 841, 895
BstMAI GTCTC 3 cut(s) 471, 734, 977
BstMBI GATC 3 cut(s) 304, 838, 892
BstMWI GCNNNNNNNGC 6 cut(s) 452, 752, 956, 1109, 1199, 1208
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 139, 1036
BstSFI CTRYAG 3 cut(s) 124, 201, 378
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 739, 1205, 1223
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 2 cut(s) 304, 892
BstYI RGATCY 2 cut(s) 304, 892
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 3 cut(s) 139, 996, 1112
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 907, 1093
BtsIMutI CAGTG 4 cut(s) 105, 299, 858, 961
BveI ACCTGC 1 cut(s) 950
Cac8I GCNNGC 6 cut(s) 448, 780, 1176, 1180, 1184, 1209
CaiI CAGNNNCTG 1 cut(s) 965
CciI TCATGA 1 cut(s) 174
CfoI GCGC 4 cut(s) 295, 870, 1081, 1221
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 71, 137, 1110
CseI GACGC 1 cut(s) 712
Csp6I GTAC 2 cut(s) 535, 643
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 5 cut(s) 175, 516, 626, 741, 788
CviQI GTAC 2 cut(s) 535, 643
DdeI CTNAG 5 cut(s) 671, 1019, 1106, 1137, 1197
DinI GGCGCC 1 cut(s) 1220
DpnI GATC 3 cut(s) 306, 840, 894
DpnII GATC 3 cut(s) 304, 838, 892
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 352, 1187
Eco47I GGWCC 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 504, 613
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 352, 1187
EgeI GGCGCC 1 cut(s) 1220
EheI GGCGCC 1 cut(s) 1220
ErhI CCWWGG 2 cut(s) 352, 1187
Esp3I CGTCTC 2 cut(s) 471, 734
FaeI CATG 5 cut(s) 178, 519, 629, 744, 791
FalI AAGNNNNNCTT 6 cut(s) 857, 889, 971, 1003, 990, 1022
FatI CATG 5 cut(s) 174, 515, 625, 740, 787
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 235, 753, 1194, 1212, 1222
FokI GGATG 2 cut(s) 914, 1100
Fsp4HI GCNGC 5 cut(s) 235, 753, 1194, 1212, 1222
FspBI CTAG 1 cut(s) 447
GlaI GCGC 4 cut(s) 294, 869, 1080, 1220
GluI GCNGC 5 cut(s) 235, 753, 1194, 1212, 1222
GsaI CCCAGC 1 cut(s) 1161
HaeII RGCGCY 1 cut(s) 1222
HaeIII GGCC 3 cut(s) 139, 996, 1112
HapII CCGG 3 cut(s) 491, 883, 1038
HgaI GACGC 1 cut(s) 712
HhaI GCGC 4 cut(s) 295, 870, 1081, 1221
Hin1I GRCGYC 2 cut(s) 723, 1219
Hin1II CATG 5 cut(s) 178, 519, 629, 744, 791
Hin6I GCGC 4 cut(s) 293, 868, 1079, 1219
HinP1I GCGC 4 cut(s) 293, 868, 1079, 1219
HinfI GANTC 3 cut(s) 7, 684, 1242
HpaII CCGG 3 cut(s) 491, 883, 1038
HphI GGTGA 3 cut(s) 38, 56, 497
Hpy166II GTNNAC 2 cut(s) 103, 488
Hpy188I TCNGA 2 cut(s) 60, 977
Hpy188III TCNNGA 7 cut(s) 175, 326, 477, 497, 731, 883, 1007
Hpy8I GTNNAC 2 cut(s) 103, 488
HpyAV CCTTC 4 cut(s) 476, 766, 1061, 1066
HpyCH4III ACNGT 6 cut(s) 636, 714, 956, 1072, 1235, 1258
HpyCH4V TGCA 6 cut(s) 103, 629, 740, 830, 959, 1207
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 752, 956, 1109, 1199, 1208
HpyF3I CTNAG 5 cut(s) 671, 1019, 1106, 1137, 1197
Hsp92I GRCGYC 2 cut(s) 723, 1219
Hsp92II CATG 5 cut(s) 178, 519, 629, 744, 791
HspAI GCGC 4 cut(s) 293, 868, 1079, 1219
KasI GGCGCC 1 cut(s) 1218
Kpn2I TCCGGA 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 3 cut(s) 304, 838, 892
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 374, 695, 1171
Lsp1109I GCAGC 3 cut(s) 739, 1205, 1223
LweI GCATC 3 cut(s) 104, 258, 817
MaeI CTAG 1 cut(s) 447
MalI GATC 3 cut(s) 306, 840, 894
MboI GATC 3 cut(s) 304, 838, 892
MboII GAAGA 6 cut(s) 47, 59, 221, 355, 671, 708
MfeI CAATTG 1 cut(s) 818
MflI RGATCY 2 cut(s) 304, 892
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 9 cut(s) 54, 76, 180, 225, 242, 437, 558, 662, 818
MluNI TGGCCA 1 cut(s) 996
Mly113I GGCGCC 1 cut(s) 1219
MlyI GAGTC 1 cut(s) 1236
MmeI TCCRAC 2 cut(s) 1071, 1149
MnlI CCTC 2 cut(s) 322, 609
Mox20I TGGCCA 1 cut(s) 996
MroI TCCGGA 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 492
MscI TGGCCA 1 cut(s) 996
MseI TTAA 4 cut(s) 66, 245, 333, 698
MslI CAYNNNNRTG 1 cut(s) 1086
Msp20I TGGCCA 1 cut(s) 996
MspI CCGG 3 cut(s) 491, 883, 1038
MspR9I CCNGG 2 cut(s) 141, 1038
MunI CAATTG 1 cut(s) 818
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 6 cut(s) 452, 752, 956, 1109, 1199, 1208
NarI GGCGCC 1 cut(s) 1219
NciI CCSGG 1 cut(s) 1038
NdeII GATC 3 cut(s) 304, 838, 892
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 5 cut(s) 178, 519, 629, 744, 791
NlaIV GGNNCC 4 cut(s) 138, 306, 495, 1220
NspV TTCGAA 1 cut(s) 682
PaeR7I CTCGAG 2 cut(s) 504, 613
PagI TCATGA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 950
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 7, 684
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 5 cut(s) 236, 754, 1195, 1213, 1223
PleI GAGTC 1 cut(s) 1236
PluTI GGCGCC 1 cut(s) 1222
PpsI GAGTC 1 cut(s) 1236
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 4 cut(s) 138, 306, 495, 1220
PspPI GGNCC 3 cut(s) 71, 137, 1110
PspXI VCTCGAGB 2 cut(s) 504, 613
PstNI CAGNNNCTG 1 cut(s) 965
PsuI RGATCY 2 cut(s) 304, 892
RsaI GTAC 2 cut(s) 536, 644
RsaNI GTAC 2 cut(s) 535, 643
RseI CAYNNNNRTG 1 cut(s) 1086
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 66, 245, 333, 698
SatI GCNGC 5 cut(s) 235, 753, 1194, 1212, 1222
Sau3AI GATC 3 cut(s) 304, 838, 892
Sau96I GGNCC 3 cut(s) 71, 137, 1110
SchI GAGTC 1 cut(s) 1236
ScrFI CCNGG 2 cut(s) 141, 1038
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 104, 258, 817
SfcI CTRYAG 3 cut(s) 124, 201, 378
SfoI GGCGCC 1 cut(s) 1220
Sfr274I CTCGAG 2 cut(s) 504, 613
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 1 cut(s) 71
SlaI CTCGAG 2 cut(s) 504, 613
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 4 cut(s) 208, 326, 504, 613
SmoI CTYRAG 4 cut(s) 208, 326, 504, 613
Sse9I AATT 9 cut(s) 54, 76, 180, 225, 242, 437, 558, 662, 818
SsiI CCGC 5 cut(s) 235, 578, 924, 948, 1222
SspDI GGCGCC 1 cut(s) 1218
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 139, 1036
StyI CCWWGG 2 cut(s) 352, 1187
TaaI ACNGT 6 cut(s) 636, 714, 956, 1072, 1235, 1258
TaqI TCGA 7 cut(s) 5, 476, 505, 614, 682, 732, 825
TasI AATT 9 cut(s) 54, 76, 180, 225, 242, 437, 558, 662, 818
TatI WGTACW 2 cut(s) 534, 642
TauI GCSGC 2 cut(s) 237, 1224
TfiI GAWTC 2 cut(s) 7, 684
Tru1I TTAA 4 cut(s) 66, 245, 333, 698
Tru9I TTAA 4 cut(s) 66, 245, 333, 698
TscAI CASTG 4 cut(s) 105, 306, 858, 961
TseI GCWGC 3 cut(s) 752, 1193, 1211
TspDTI ATGAA 3 cut(s) 191, 865, 904
TspGWI ACGGA 2 cut(s) 716, 1100
TspRI CASTG 4 cut(s) 105, 306, 858, 961
VneI GTGCAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 3 cut(s) 54, 180, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1165
XhoI CTCGAG 2 cut(s) 504, 613
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.