RLG00000026313

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000755
Physical Location & Seq
Reverse (-)
2097263 .. 2097861
599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026313

Sequence Viewer

Length: 396 bp
ATGAGAGTGAAGGAACGAGAGAGAGAACATTGGATGGCCTTCTATACACTTTCTCAGCATCTCAAGAAGCGTATAAGGGAATACCTAAAAGACCAATGGCAAGAAAACACAGCGAGTGATAGTCTCAAGCCGGTACTCTATAAAGAAGAAAGTTACATTGTTCGGAAAGGAGAACCAATGGATGCGAATCATGCAATGCTCTTCATAATGCGAGGCAGACTCTTGAGTGTGACTACTAATGGTGGAAGGACTGGCTTCTTCTTCAACTCGGTAAATCTCGAGGCTGGTGAATTCTGTGGTGTCCTCACATGGTCTTTGATCCGCTCCCCTATTCTACACTTCCAATCTCCACTAGAACTGTCCAAGCCCCTAGTGAAGTTGAAGCCTTTGCTCTGA

Protein Analysis

132

Amino Acids

15.37

Weight (kDa)

9.63

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 324
AciI CCGC 1 cut(s) 322
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 135
AgsI TTSAA 2 cut(s) 265, 382
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 278
BccI CCATC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 353, 371
BmeT110I CYCGRG 1 cut(s) 278
BmsI GCATC 2 cut(s) 67, 172
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpuEI CTTGAG 3 cut(s) 47, 110, 244
BsaBI GATNNNNATC 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 186
BseGI GGATG 2 cut(s) 39, 187
BseJI GATNNNNATC 1 cut(s) 186
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 256
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 313
BspQI GCTCTTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 39, 187
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 39, 187
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 191, 309
CviJI RGCY 6 cut(s) 38, 130, 255, 284, 367, 385
CviKI_1 RGCY 6 cut(s) 38, 130, 255, 284, 367, 385
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 290
FaeI CATG 2 cut(s) 194, 312
FaiI YATR 6 cut(s) 45, 74, 141, 192, 206, 310
FatI CATG 2 cut(s) 190, 308
FokI GGATG 2 cut(s) 46, 194
FspBI CTAG 2 cut(s) 353, 371
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 194, 312
HinfI GANTC 2 cut(s) 187, 219
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 165, 395
Hpy188III TCNNGA 3 cut(s) 64, 223, 278
HpyAV CCTTC 3 cut(s) 4, 49, 240
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 2 cut(s) 194, 312
Kzo9I GATC 1 cut(s) 318
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 3 cut(s) 144, 237, 270
LweI GCATC 2 cut(s) 67, 172
MaeI CTAG 2 cut(s) 353, 371
MaeIII GTNAC 2 cut(s) 152, 229
MalI GATC 1 cut(s) 320
MbiI CCGCTC 1 cut(s) 324
MboI GATC 1 cut(s) 318
MboII GAAGA 4 cut(s) 158, 193, 250, 253
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 3 cut(s) 206, 274, 314
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 318
NlaIII CATG 2 cut(s) 194, 312
NmuCI GTSAC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 187
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 1 cut(s) 213
SetI ASST 1 cut(s) 87
SfaNI GCATC 2 cut(s) 67, 172
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 4 cut(s) 62, 125, 223, 278
SmoI CTYRAG 4 cut(s) 62, 125, 223, 278
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 322
SspMI CTAG 2 cut(s) 353, 371
TaaI ACNGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 290
TfiI GAWTC 1 cut(s) 187
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 193
XapI RAATTY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 2 cut(s) 353, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.