Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

11483 .. 12076

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgagagtgaaggaacgagagagacaacattggatggccttctacacacttcatcagcatctcaagatgagtataagggaataccaaaaagaccaatggaaagaaaacataggtataaacatggacaactttctgctcagtcttcccaaagcgatatcttgctttggggctattcgtggagtgccattctctgaaaacttggataagcaagtgctggatgcaatgtgtgatagtctcaagccggactggtttttcttcaactcggtaaatctcaaggctggtgacttctgtggtgaagagctcctcacatggttccgctcccctattctacacatccaatctccactagaactgtccaagccctcagtgaagttgaagcctttgctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

129

Amino Acids

15.17

Weight (kDa)

8.46

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	259, 376
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	16, 239
AoxI	GGCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	293, 305
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	16, 239
BfaI	CTAG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	67, 208
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	3 cut(s)	47, 221, 257
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	39, 223, 333
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	151, 378
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	16, 239
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	150, 377
BspLI	GGNNCC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	137, 364
BstF5I	GGATG	3 cut(s)	39, 223, 333
BstMAI	GTCTC	2 cut(s)	16, 239
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	39, 223, 333
BtsIMutI	CAGTG	1 cut(s)	372
CviAII	CATG	2 cut(s)	121, 309
CviJI	RGCY	7 cut(s)	38, 170, 241, 278, 301, 361, 379
CviKI_1	RGCY	7 cut(s)	38, 170, 241, 278, 301, 361, 379
DdeI	CTNAG	2 cut(s)	137, 364
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	2 cut(s)	124, 312
FaiI	YATR	5 cut(s)	74, 110, 116, 122, 310
FatI	CATG	2 cut(s)	120, 308
FokI	GGATG	3 cut(s)	46, 230, 320
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	124, 312
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	293, 305
Hpy188I	TCNGA	2 cut(s)	193, 389
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	4, 49
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	137, 364
Hsp92II	CATG	2 cut(s)	124, 312
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	306, 323
LpnPI	CCDG	4 cut(s)	200, 232, 255, 264
LweI	GCATC	2 cut(s)	67, 208
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	134, 247, 308
MhlI	GDGCHC	1 cut(s)	303
MnlI	CCTC	2 cut(s)	314, 373
MspI	CCGG	1 cut(s)	242
NlaIII	CATG	2 cut(s)	124, 312
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	2 cut(s)	115, 303
SfaNI	GCATC	2 cut(s)	67, 208
SmlI	CTYRAG	3 cut(s)	62, 236, 272
SmoI	CTYRAG	3 cut(s)	62, 236, 272
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	354
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	372
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.