Rroxscaffold_4G00279470

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000755
Physical Location & Seq
Reverse (-)
2265041 .. 2265887
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279470.1

Sequence Viewer

Length: 750 bp
ATGAAGAGGAAAAAAGAGGCCATAGAAGAGGGGACACAAATAATAGAACTTTGGATGGCTTTCCATTCACTTCCTCGGAAGCTCAAGAAGCGAATATGGCAATACCAGAAATACAAAGGGCAAAAAACTAGAGGTGTTGATGTGGAAAATTTTCTTCACAATCTTCCCCGGGACATCAGAAGGGAAACAAGGCAGCATCTATTCTCTGGTCCACTCGGTGAAGTTCCAATGCTTCAAAATATGGATAAACGATTGCTTCATGCAATATGTGATCATCTGAAGCCAGTACTTTACATAGAGCACAGCTTCATACTTCGGAAAGGAGACCCTCTCGATGAGATGTTGTTCATCACCCGTGGCAAAGTATTGACTTACACTACTGAGGGCAATGCAGGCGCTGATTGTCTCGAAAAGGGTGACTTCTATGGCCAAGAACTTCTTGACTGGGTGCTCAAGACTTATCCCAATCCCAGCCTATCCAACCTTCCCTTCTCAACCAAAACAGTCCAAGCGCATACCAAAGTTGAAGTGTTTGCTCTAAGGGCTAATGACTTGAAGAATGTAGTCTCCAAGTTCTGGTGGCTTTTCCCCAGCAATGGTTTGGACCAATCACGCCAACGGAGGGCAACTCATGCTTTGCAAGCAGCATGGCGCCGCTATAAACAGCTTCAAAAGACTCCCCAGTCTAATGAGGGCAGTGTTTCTCGCACTGACCATGCTGTAGTCTCAGAACCCATGATAGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

249

Amino Acids

28.96

Weight (kDa)

9.69

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 576
AciI CCGC 1 cut(s) 655
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 652
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 576, 596, 622
AgsI TTSAA 4 cut(s) 236, 527, 556, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 3 cut(s) 82, 306, 667
AluI AGCT 3 cut(s) 82, 306, 667
Alw21I GWGCWC 2 cut(s) 303, 453
Alw26I GTCTC 4 cut(s) 318, 410, 571, 730
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 18, 427
ApeKI GCWGC 2 cut(s) 193, 644
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 3 cut(s) 398, 514, 654
AspS9I GGNCC 2 cut(s) 209, 604
AsuC2I CCSGG 2 cut(s) 169, 170
AsuHPI GGTGA 3 cut(s) 230, 343, 428
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 2 cut(s) 209, 604
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 303, 453
BbvI GCAGC 2 cut(s) 205, 656
BccI CCATC 1 cut(s) 49
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 2 cut(s) 169, 170
BcoDI GTCTC 4 cut(s) 318, 410, 571, 730
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 2 cut(s) 399, 655
BisI GCNGC 3 cut(s) 194, 645, 655
BlsI GCNGC 3 cut(s) 195, 646, 656
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 169, 170
Bme18I GGWCC 2 cut(s) 209, 604
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 209, 604
BmiI GGNNCC 1 cut(s) 653
BmrFI CCNGG 2 cut(s) 169, 170
BmrI ACTGGG 2 cut(s) 454, 676
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 2 cut(s) 454, 676
BplI GAGNNNNNCTC 4 cut(s) 315, 347, 613, 645
BpuEI CTTGAG 2 cut(s) 68, 437
BpuMI CCSGG 2 cut(s) 169, 170
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 74, 167, 168, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 576, 596, 622
Bse1I ACTGG 3 cut(s) 284, 449, 682
Bse3DI GCAATG 2 cut(s) 394, 601
BseDI CCNNGG 4 cut(s) 74, 167, 168, 355
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 3 cut(s) 576, 596, 622
BseMI GCAATG 2 cut(s) 394, 601
BseMII CTCAG 2 cut(s) 372, 741
BseNI ACTGG 3 cut(s) 284, 449, 682
BseXI GCAGC 2 cut(s) 205, 656
BseYI CCCAGC 2 cut(s) 470, 590
BshFI GGCC 2 cut(s) 20, 429
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 303, 453
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 46, 185
BslI CCNNNNNNNGG 3 cut(s) 576, 596, 622
BsmAI GTCTC 4 cut(s) 318, 410, 571, 730
BsmFI GGGAC 2 cut(s) 46, 185
BsnI GGCC 2 cut(s) 20, 429
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 303, 453
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 655
BspANI GGCC 2 cut(s) 20, 429
BspCNI CTCAG 2 cut(s) 373, 740
BspLI GGNNCC 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 651
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 394, 601
BsrI ACTGG 3 cut(s) 284, 449, 682
BssECI CCNNGG 4 cut(s) 74, 167, 168, 355
BssMI GATC 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 652
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 652
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 394, 642
BstDEI CTNAG 3 cut(s) 381, 539, 727
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 60
BstH2I RGCGCY 2 cut(s) 399, 655
BstHHI GCGC 3 cut(s) 398, 514, 654
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 4 cut(s) 318, 410, 571, 730
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 6 cut(s) 88, 97, 393, 542, 632, 641
BstSCI CCNGG 2 cut(s) 167, 168
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 205, 656
BsuRI GGCC 2 cut(s) 20, 429
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 703, 708
Cac8I GCNNGC 2 cut(s) 394, 642
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 3 cut(s) 398, 514, 654
Cfr13I GGNCC 2 cut(s) 209, 604
Cfr9I CCCGGG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 287
CviAII CATG 5 cut(s) 260, 632, 648, 716, 736
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 3 cut(s) 381, 539, 727
DinI GGCGCC 1 cut(s) 653
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 218
DrdI GACNNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 209, 604
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 653
EheI GGCGCC 1 cut(s) 653
FaeI CATG 5 cut(s) 263, 635, 651, 719, 739
FalI AAGNNNNNCTT 4 cut(s) 404, 436, 423, 455
FaqI GGGAC 2 cut(s) 46, 185
FatI CATG 5 cut(s) 259, 631, 647, 715, 735
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 194, 645, 655
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 194, 645, 655
FspBI CTAG 1 cut(s) 129
GlaI GCGC 3 cut(s) 397, 513, 653
GluI GCNGC 3 cut(s) 194, 645, 655
GsaI CCCAGC 2 cut(s) 474, 594
HaeII RGCGCY 2 cut(s) 399, 655
HaeIII GGCC 2 cut(s) 20, 429
HapII CCGG 1 cut(s) 169
HhaI GCGC 3 cut(s) 398, 514, 654
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 5 cut(s) 263, 635, 651, 719, 739
Hin6I GCGC 3 cut(s) 396, 512, 652
HinP1I GCGC 3 cut(s) 396, 512, 652
HinfI GANTC 1 cut(s) 676
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 230, 343, 428
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 5 cut(s) 78, 179, 279, 318, 730
Hpy188III TCNNGA 5 cut(s) 85, 332, 407, 440, 454
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 174, 494, 499
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 3 cut(s) 263, 392, 640
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 97, 393, 542, 632, 641
HpyF3I CTNAG 3 cut(s) 381, 539, 727
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 5 cut(s) 263, 635, 651, 719, 739
HspAI GCGC 3 cut(s) 396, 512, 652
KasI GGCGCC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
Lsp1109I GCAGC 2 cut(s) 205, 656
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 16, 38, 146, 155, 568
MhlI GDGCHC 2 cut(s) 303, 453
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 429
Mly113I GGCGCC 1 cut(s) 652
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 8 cut(s) 10, 22, 84, 125, 339, 376, 615, 685
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 169, 170
MwoI GCNNNNNNNGC 6 cut(s) 88, 97, 393, 542, 632, 641
NarI GGCGCC 1 cut(s) 652
NciI CCSGG 2 cut(s) 169, 170
NdeII GATC 1 cut(s) 271
NlaIII CATG 5 cut(s) 263, 635, 651, 719, 739
NlaIV GGNNCC 1 cut(s) 653
NmuCI GTSAC 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 576
PkrI GCNGC 3 cut(s) 195, 646, 656
PleI GAGTC 1 cut(s) 670
PluTI GGCGCC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 670
PspFI CCCAGC 2 cut(s) 470, 590
PspN4I GGNNCC 1 cut(s) 653
PspPI GGNCC 2 cut(s) 209, 604
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 3 cut(s) 194, 645, 655
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 209, 604
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 169, 170
SduI GDGCHC 2 cut(s) 303, 453
SetI ASST 5 cut(s) 84, 136, 308, 486, 669
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 720
SfoI GGCGCC 1 cut(s) 653
SinI GGWCC 2 cut(s) 209, 604
SmaI CCCGGG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 83, 452
SmoI CTYRAG 2 cut(s) 83, 452
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 655
SspDI GGCGCC 1 cut(s) 651
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 167, 168
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 333, 408
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 657
TscAI CASTG 2 cut(s) 703, 715
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 193, 644
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 4 cut(s) 17, 248, 298, 337
TspGWI ACGGA 1 cut(s) 634
TspMI CCCGGG 1 cut(s) 168
TspRI CASTG 2 cut(s) 703, 715
Van91I CCANNNNNTGG 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 209, 604
XapI RAATTY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.