Rmu_sc0002387.1_g000012

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002387.1
Physical Location & Seq
Forward (+)
42394 .. 44976
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002387.1_g000012.1.cds

Sequence Viewer

Length: 1326 bp
atgtatgctaagctattaagtttgttttgctctatggctttatataggatacagagtggtgatatagaagaaaatgttgaagaactaattcaaaaagctaatagtaatcattcaagttctagtttagcatcagtggactcggctgtcgatatggggcctggttttgaagggctaaagagctttaggaaaaccatgaaaatctattatgaagttttgtctataggcctgagttccaatgataaaattctttaccgccgggaattaatccagcacaggtggaataagatgcttcttgttctgtgtgtcatcgctctctcactggatcctttgttttgttatatccttgtggttaatgatgagaagaagtgccttggattggacagaacgttaggagctatagctagtgttctgcgatttgtcgtggatttcttttatgtgttttatatcatttatcaatttcgtgctagtgttgtcactctttgttctcaatcatcgaaagaaggtgaactggttccacatactcgggcaagagcatggagatatttgttgttgtacttcatattcgacatccttgtaattcttccacttccacaggtgatagtttatgttgtcattccaagattgaataactcgagacttttccatgcaacacagctggaggaaatgagattgaaggggctagagatagagttgtggatggccttccattcccttcctcggaagctcaagaagcgaatatggcaataccagaaatacaaatggcaagaaactaaaggtgttgatgtggagaattttcttcacaatcttccccgggacatcagaagggagacaaagcagtatctatgctctggtccactcagtcaagttccgatgcttcaaaatatggataaacgattgcttgatgcactatgtgatcatctgaagccagcactttacatagagcacagcttcatacttcggaaaggagaccctctcgatgagatgttgttcatcactcgtggcaaagtattgacttacaccacagaaggcaatgtaggcgctgattgtcttgaaaagggtgacttctatggccaagaacttcttgactgggtgctcaagacttatcccaatgccagcctatccaaccttcccttctcaaccaaaacagtccaagcgcataccaaagttgaagtgtttgctctaagggctaatgacttgaagaatgtagtctctaagttctggtggcttttccccagtttggaccaatcactccaaccaagggcagctcatgctttgcaagcagcatggcgccgctataaacagcttcaaaagactccccccgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

51.18

Weight (kDa)

9.16

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 1287
AciI CCGC 2 cut(s) 253, 1291
AclI AACGTT 1 cut(s) 386
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 2 cut(s) 243, 790
AcuI CTGAAG 1 cut(s) 941
AcyI GRCGYC 1 cut(s) 1288
AdeI CACNNNGTG 1 cut(s) 911
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 4 cut(s) 376, 717, 1237, 1258
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
Alw21I GWGCWC 2 cut(s) 945, 1095
Alw26I GTCTC 4 cut(s) 628, 821, 960, 1213
AlwI GGATC 2 cut(s) 317, 330
Ama87I CYCGRG 3 cut(s) 522, 631, 810
AoxI GGCC 4 cut(s) 155, 223, 699, 1069
ApeKI GCWGC 2 cut(s) 1262, 1280
ApoI RAATTY 2 cut(s) 243, 790
AseI ATTAAT 1 cut(s) 263
Asp700I GAANNNNTTC 2 cut(s) 87, 510
AspLEI GCGC 3 cut(s) 1040, 1156, 1290
AspS9I GGNCC 3 cut(s) 155, 851, 1240
AsuC2I CCSGG 3 cut(s) 257, 811, 812
AsuHPI GGTGA 4 cut(s) 71, 515, 607, 1070
AvaI CYCGRG 3 cut(s) 522, 631, 810
AvaII GGWCC 2 cut(s) 851, 1240
BalI TGGCCA 1 cut(s) 1071
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 1287
BauI CACGAG 1 cut(s) 996
Bbv12I GWGCWC 2 cut(s) 945, 1095
BbvI GCAGC 2 cut(s) 1274, 1292
BccI CCATC 1 cut(s) 691
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 913
BcnI CCSGG 3 cut(s) 257, 811, 812
BcoDI GTCTC 4 cut(s) 628, 821, 960, 1213
BfaI CTAG 4 cut(s) 120, 402, 465, 680
BfmI CTRYAG 2 cut(s) 219, 396
BfoI RGCGCY 2 cut(s) 1041, 1291
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 3 cut(s) 1263, 1281, 1291
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 3 cut(s) 1264, 1282, 1292
Bme1390I CCNGG 4 cut(s) 159, 257, 811, 812
Bme18I GGWCC 2 cut(s) 851, 1240
BmeT110I CYCGRG 3 cut(s) 522, 631, 810
BmgT120I GGNCC 3 cut(s) 155, 851, 1240
BmiI GGNNCC 4 cut(s) 156, 324, 513, 1289
BmrFI CCNGG 4 cut(s) 159, 257, 811, 812
BmrI ACTGGG 2 cut(s) 1096, 1227
BmsI GCATC 4 cut(s) 137, 276, 861, 892
BmuI ACTGGG 2 cut(s) 1096, 1227
BplI GAGNNNNNCTC 2 cut(s) 957, 989
BpmI CTGGAG 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 710, 1079
BpuMI CCSGG 3 cut(s) 257, 811, 812
BsaHI GRCGYC 1 cut(s) 1288
BsaI GGTCTC 1 cut(s) 960
BsaJI CCNNGG 5 cut(s) 370, 716, 809, 810, 1256
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 717, 1237, 1258
Bse1I ACTGG 4 cut(s) 324, 513, 1091, 1233
Bse3DI GCAATG 1 cut(s) 1036
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 5 cut(s) 370, 716, 809, 810, 1256
BseGI GGATG 2 cut(s) 567, 702
BseLI CCNNNNNNNGG 4 cut(s) 376, 717, 1237, 1258
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 2 cut(s) 218, 871
BseNI ACTGG 4 cut(s) 324, 513, 1091, 1233
BseXI GCAGC 2 cut(s) 1274, 1292
BshFI GGCC 4 cut(s) 157, 225, 701, 1071
BshNI GGYRCC 1 cut(s) 1287
BsiHKAI GWGCWC 2 cut(s) 945, 1095
BsiHKCI CYCGRG 3 cut(s) 522, 631, 810
BsiSI CCGG 2 cut(s) 256, 811
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 4 cut(s) 376, 717, 1237, 1258
BsmAI GTCTC 4 cut(s) 628, 821, 960, 1213
BsmFI GGGAC 1 cut(s) 827
BsnI GGCC 4 cut(s) 157, 225, 701, 1071
Bso31I GGTCTC 1 cut(s) 960
BsoBI CYCGRG 3 cut(s) 522, 631, 810
Bsp1286I GDGCHC 2 cut(s) 945, 1095
Bsp143I GATC 2 cut(s) 322, 913
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 2 cut(s) 253, 1291
BspANI GGCC 4 cut(s) 157, 225, 701, 1071
BspCNI CTCAG 2 cut(s) 219, 870
BspLI GGNNCC 4 cut(s) 156, 324, 513, 1289
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 1 cut(s) 1287
BspTNI GGTCTC 1 cut(s) 960
BsrDI GCAATG 1 cut(s) 1036
BsrI ACTGG 4 cut(s) 324, 513, 1091, 1233
BssECI CCNNGG 5 cut(s) 370, 716, 809, 810, 1256
BssMI GATC 2 cut(s) 322, 913
BssNI GRCGYC 1 cut(s) 1288
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 2 cut(s) 370, 1256
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 1147
BstACI GRCGYC 1 cut(s) 1288
BstAPI GCANNNNNTGC 1 cut(s) 1268
BstC8I GCNNGC 3 cut(s) 927, 1114, 1278
BstDEI CTNAG 5 cut(s) 9, 227, 857, 1181, 1212
BstF5I GGATG 2 cut(s) 567, 702
BstH2I RGCGCY 2 cut(s) 1041, 1291
BstHHI GCGC 3 cut(s) 1040, 1156, 1290
BstKTI GATC 2 cut(s) 325, 916
BstMAI GTCTC 4 cut(s) 628, 821, 960, 1213
BstMBI GATC 2 cut(s) 322, 913
BstMWI GCNNNNNNNGC 6 cut(s) 730, 739, 1035, 1184, 1268, 1277
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 4 cut(s) 157, 255, 809, 810
BstSFI CTRYAG 2 cut(s) 219, 396
BstV1I GCAGC 2 cut(s) 1274, 1292
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 4 cut(s) 157, 225, 701, 1071
BtgZI GCGATG 1 cut(s) 292
BtsCI GGATG 2 cut(s) 567, 702
BtsIMutI CAGTG 2 cut(s) 138, 317
Cac8I GCNNGC 3 cut(s) 927, 1114, 1278
CfoI GCGC 3 cut(s) 1040, 1156, 1290
Cfr13I GGNCC 3 cut(s) 155, 851, 1240
Cfr9I CCCGGG 1 cut(s) 810
Csp6I GTAC 1 cut(s) 553
CviAII CATG 5 cut(s) 193, 534, 644, 1268, 1284
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 5 cut(s) 9, 227, 857, 1181, 1212
DinI GGCGCC 1 cut(s) 1289
DpnI GATC 2 cut(s) 324, 915
DpnII GATC 2 cut(s) 322, 913
DraIII CACNNNGTG 1 cut(s) 911
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 1069
Eco130I CCWWGG 2 cut(s) 370, 1256
Eco147I AGGCCT 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 851, 1240
Eco57I CTGAAG 1 cut(s) 941
Eco88I CYCGRG 3 cut(s) 522, 631, 810
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 370, 1256
EgeI GGCGCC 1 cut(s) 1289
EheI GGCGCC 1 cut(s) 1289
ErhI CCWWGG 2 cut(s) 370, 1256
FaeI CATG 5 cut(s) 196, 537, 647, 1271, 1287
FalI AAGNNNNNCTT 4 cut(s) 1046, 1078, 1065, 1097
FaqI GGGAC 1 cut(s) 827
FatI CATG 5 cut(s) 192, 533, 643, 1267, 1283
FbaI TGATCA 1 cut(s) 913
Fnu4HI GCNGC 3 cut(s) 1263, 1281, 1291
FokI GGATG 2 cut(s) 554, 709
Fsp4HI GCNGC 3 cut(s) 1263, 1281, 1291
FspBI CTAG 4 cut(s) 120, 402, 465, 680
GlaI GCGC 3 cut(s) 1039, 1155, 1289
GluI GCNGC 3 cut(s) 1263, 1281, 1291
GsuI CTGGAG 1 cut(s) 677
HaeII RGCGCY 2 cut(s) 1041, 1291
HaeIII GGCC 4 cut(s) 157, 225, 701, 1071
HapII CCGG 2 cut(s) 256, 811
HhaI GCGC 3 cut(s) 1040, 1156, 1290
Hin1I GRCGYC 1 cut(s) 1288
Hin1II CATG 5 cut(s) 196, 537, 647, 1271, 1287
Hin6I GCGC 3 cut(s) 1038, 1154, 1288
HinP1I GCGC 3 cut(s) 1038, 1154, 1288
HinfI GANTC 2 cut(s) 137, 1312
HpaII CCGG 2 cut(s) 256, 811
HphI GGTGA 4 cut(s) 71, 515, 607, 1070
Hpy166II GTNNAC 3 cut(s) 136, 506, 854
Hpy188I TCNGA 5 cut(s) 720, 821, 870, 921, 960
Hpy188III TCNNGA 6 cut(s) 633, 727, 974, 1049, 1082, 1096
Hpy8I GTNNAC 3 cut(s) 136, 506, 854
HpyAV CCTTC 9 cut(s) 161, 494, 667, 712, 722, 816, 1019, 1136, 1141
HpyCH4III ACNGT 1 cut(s) 1147
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 647, 905, 1276
HpyF10VI GCNNNNNNNGC 6 cut(s) 730, 739, 1035, 1184, 1268, 1277
HpyF3I CTNAG 5 cut(s) 9, 227, 857, 1181, 1212
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 1288
Hsp92II CATG 5 cut(s) 196, 537, 647, 1271, 1287
HspAI GCGC 3 cut(s) 1038, 1154, 1288
KasI GGCGCC 1 cut(s) 1287
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 2 cut(s) 322, 913
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 2 cut(s) 1274, 1292
LweI GCATC 4 cut(s) 137, 276, 861, 892
MaeI CTAG 4 cut(s) 120, 402, 465, 680
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 472, 1058
MalI GATC 2 cut(s) 324, 915
MboI GATC 2 cut(s) 322, 913
MboII GAAGA 7 cut(s) 80, 92, 373, 572, 788, 797, 1210
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 945, 1095
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 6 cut(s) 87, 243, 260, 455, 576, 790
MluNI TGGCCA 1 cut(s) 1071
Mly113I GGCGCC 1 cut(s) 1288
MlyI GAGTC 2 cut(s) 131, 1306
MmeI TCCRAC 2 cut(s) 1146, 1276
MnlI CCTC 3 cut(s) 652, 726, 981
Mox20I TGGCCA 1 cut(s) 1071
MroXI GAANNNNTTC 2 cut(s) 87, 510
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 3 cut(s) 17, 263, 351
Msp20I TGGCCA 1 cut(s) 1071
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 2 cut(s) 256, 811
MspR9I CCNGG 4 cut(s) 159, 257, 811, 812
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 6 cut(s) 730, 739, 1035, 1184, 1268, 1277
NarI GGCGCC 1 cut(s) 1288
NciI CCSGG 3 cut(s) 257, 811, 812
NdeII GATC 2 cut(s) 322, 913
NlaIII CATG 5 cut(s) 196, 537, 647, 1271, 1287
NlaIV GGNNCC 4 cut(s) 156, 324, 513, 1289
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 2 cut(s) 472, 1058
PaeR7I CTCGAG 1 cut(s) 631
PceI AGGCCT 1 cut(s) 225
PdmI GAANNNNTTC 2 cut(s) 87, 510
PkrI GCNGC 3 cut(s) 1264, 1282, 1292
PleI GAGTC 2 cut(s) 131, 1306
PluTI GGCGCC 1 cut(s) 1291
PpsI GAGTC 2 cut(s) 131, 1306
PshBI ATTAAT 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 156, 324, 513, 1289
PspPI GGNCC 3 cut(s) 155, 851, 1240
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 17, 263, 351
SatI GCNGC 3 cut(s) 1263, 1281, 1291
Sau3AI GATC 2 cut(s) 322, 913
Sau96I GGNCC 3 cut(s) 155, 851, 1240
SchI GAGTC 2 cut(s) 131, 1306
ScrFI CCNGG 4 cut(s) 159, 257, 811, 812
SduI GDGCHC 2 cut(s) 945, 1095
SfaNI GCATC 4 cut(s) 137, 276, 861, 892
SfcI CTRYAG 2 cut(s) 219, 396
SfoI GGCGCC 1 cut(s) 1289
Sfr274I CTCGAG 1 cut(s) 631
SinI GGWCC 2 cut(s) 851, 1240
SlaI CTCGAG 1 cut(s) 631
SmaI CCCGGG 1 cut(s) 812
SmlI CTYRAG 3 cut(s) 631, 725, 1094
SmoI CTYRAG 3 cut(s) 631, 725, 1094
Sse9I AATT 6 cut(s) 87, 243, 260, 455, 576, 790
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 2 cut(s) 253, 1291
SspDI GGCGCC 1 cut(s) 1287
SspMI CTAG 4 cut(s) 120, 402, 465, 680
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 157, 255, 809, 810
StyI CCWWGG 2 cut(s) 370, 1256
TaaI ACNGT 1 cut(s) 1147
TaiI ACGT 1 cut(s) 389
TaqI TCGA 5 cut(s) 147, 494, 564, 632, 975
TasI AATT 6 cut(s) 87, 243, 260, 455, 576, 790
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 1293
Tru1I TTAA 3 cut(s) 17, 263, 351
Tru9I TTAA 3 cut(s) 17, 263, 351
TscAI CASTG 2 cut(s) 138, 324
TseFI GTSAC 2 cut(s) 472, 1058
TseI GCWGC 2 cut(s) 1262, 1280
Tsp45I GTSAC 2 cut(s) 472, 1058
TspDTI ATGAA 5 cut(s) 209, 222, 547, 940, 979
TspMI CCCGGG 1 cut(s) 810
TspRI CASTG 2 cut(s) 138, 324
VpaK11BI GGWCC 2 cut(s) 851, 1240
VspI ATTAAT 1 cut(s) 263
XapI RAATTY 2 cut(s) 243, 790
XhoI CTCGAG 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 810
XmnI GAANNNNTTC 2 cut(s) 87, 510
XspI CTAG 4 cut(s) 120, 402, 465, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.