Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

27527 .. 28348

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgagattgaaggggcaagagatggagttgtggatggccttccattcccttcctcggaagctcaagaagcgaatatggcaataccagaaatacaaatggcaagaaactaaaggtgttgatgtggagaattttcttcaccatcttccccgggacatcagaagggaaacaaagcagtatctatgctctggtccactcagtcaagttccaatgcttcaaaatatggataaacgattgtttgatgcaatatgtgatcatctgaagccagtactttacatagagcacagtttcatacttcggaaaggagaccctctcgatgagatgttgttcatcactcgtggcaaagtattgacttacaccacagaaggcaatgcaggcgctgattgtctcgaaaagggggacttctatggccaagaacttcttgactgggtgctcaagacttatcccaatcccagcctatccaaccttcccttctcaaccaaaacagtccaagcgcataccaaagttgaagtgtttgctctaagggctaatgacttgaaaaatgtagtctctaagttctggtggcttttccccagcaagggtttggaccaatcacgccaaccaagggcagctcatgctttgcaagcagcatggcgccgctataaacagcttcaaaagactccccggtctaaggagggcagtgtttctggcactgaccatgctgtagtctcagaacccatgatagcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

242

Amino Acids

28.16

Weight (kDa)

9.53

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	630
AciI	CCGC	1 cut(s)	634
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	631
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	5 cut(s)	54, 574, 575, 601, 667
AgsI	TTSAA	5 cut(s)	10, 215, 506, 535, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	3 cut(s)	61, 608, 646
AluI	AGCT	3 cut(s)	61, 608, 646
Alw21I	GWGCWC	2 cut(s)	282, 432
Alw26I	GTCTC	4 cut(s)	297, 389, 550, 709
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	36, 406
ApeKI	GCWGC	2 cut(s)	605, 623
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	3 cut(s)	377, 493, 633
AspS9I	GGNCC	2 cut(s)	188, 583
AsuC2I	CCSGG	3 cut(s)	148, 149, 661
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	188, 583
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	630
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	282, 432
BbvI	GCAGC	2 cut(s)	617, 635
BccI	CCATC	3 cut(s)	16, 28, 147
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	3 cut(s)	148, 149, 661
BcoDI	GTCTC	4 cut(s)	297, 389, 550, 709
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	2 cut(s)	378, 634
BisI	GCNGC	3 cut(s)	606, 624, 634
BlsI	GCNGC	3 cut(s)	607, 625, 635
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	3 cut(s)	148, 149, 661
Bme18I	GGWCC	2 cut(s)	188, 583
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	188, 583
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	3 cut(s)	148, 149, 661
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpuEI	CTTGAG	2 cut(s)	47, 416
BpuMI	CCSGG	3 cut(s)	148, 149, 661
BsaHI	GRCGYC	1 cut(s)	631
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	53, 146, 147, 599, 659
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 574, 575, 601, 667
Bse1I	ACTGG	2 cut(s)	263, 428
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	5 cut(s)	53, 146, 147, 599, 659
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	5 cut(s)	54, 574, 575, 601, 667
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	208, 720
BseNI	ACTGG	2 cut(s)	263, 428
BseXI	GCAGC	2 cut(s)	617, 635
BseYI	CCCAGC	2 cut(s)	449, 569
BshFI	GGCC	2 cut(s)	38, 408
BshNI	GGYRCC	1 cut(s)	630
BsiHKAI	GWGCWC	2 cut(s)	282, 432
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	148, 661
BslFI	GGGAC	2 cut(s)	164, 410
BslI	CCNNNNNNNGG	5 cut(s)	54, 574, 575, 601, 667
BsmAI	GTCTC	4 cut(s)	297, 389, 550, 709
BsmFI	GGGAC	2 cut(s)	164, 410
BsnI	GGCC	2 cut(s)	38, 408
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	282, 432
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	2 cut(s)	38, 408
BspCNI	CTCAG	2 cut(s)	207, 719
BspLI	GGNNCC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	263, 428
BssECI	CCNNGG	5 cut(s)	53, 146, 147, 599, 659
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	631
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	284, 484
BstACI	GRCGYC	1 cut(s)	631
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	373, 621
BstDEI	CTNAG	5 cut(s)	194, 518, 549, 666, 706
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	378, 634
BstHHI	GCGC	3 cut(s)	377, 493, 633
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	4 cut(s)	297, 389, 550, 709
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 611, 620
BstSCI	CCNGG	3 cut(s)	146, 147, 659
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	617, 635
BsuRI	GGCC	2 cut(s)	38, 408
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	2 cut(s)	682, 687
Cac8I	GCNNGC	2 cut(s)	373, 621
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	3 cut(s)	377, 493, 633
Cfr13I	GGNCC	2 cut(s)	188, 583
Cfr9I	CCCGGG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	4 cut(s)	611, 627, 695, 715
CviJI	RGCY	9 cut(s)	38, 61, 262, 408, 453, 524, 562, 608, 646
CviKI_1	RGCY	9 cut(s)	38, 61, 262, 408, 453, 524, 562, 608, 646
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	5 cut(s)	194, 518, 549, 666, 706
DinI	GGCGCC	1 cut(s)	632
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	188, 583
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	599
EgeI	GGCGCC	1 cut(s)	632
EheI	GGCGCC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	4 cut(s)	614, 630, 698, 718
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 402, 434
FaqI	GGGAC	2 cut(s)	164, 410
FatI	CATG	4 cut(s)	610, 626, 694, 714
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	606, 624, 634
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	606, 624, 634
GlaI	GCGC	3 cut(s)	376, 492, 632
GluI	GCNGC	3 cut(s)	606, 624, 634
GsaI	CCCAGC	2 cut(s)	453, 573
HaeII	RGCGCY	2 cut(s)	378, 634
HaeIII	GGCC	2 cut(s)	38, 408
HapII	CCGG	2 cut(s)	148, 661
HhaI	GCGC	3 cut(s)	377, 493, 633
Hin1I	GRCGYC	1 cut(s)	631
Hin1II	CATG	4 cut(s)	614, 630, 698, 718
Hin6I	GCGC	3 cut(s)	375, 491, 631
HinP1I	GCGC	3 cut(s)	375, 491, 631
HinfI	GANTC	1 cut(s)	655
HpaII	CCGG	2 cut(s)	148, 661
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	5 cut(s)	57, 158, 258, 297, 709
Hpy188III	TCNNGA	5 cut(s)	64, 311, 386, 419, 433
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	7 cut(s)	4, 49, 59, 153, 356, 473, 478
HpyCH4III	ACNGT	2 cut(s)	284, 484
HpyCH4V	TGCA	3 cut(s)	242, 371, 619
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 611, 620
HpyF3I	CTNAG	5 cut(s)	194, 518, 549, 666, 706
Hsp92I	GRCGYC	1 cut(s)	631
Hsp92II	CATG	4 cut(s)	614, 630, 698, 718
HspAI	GCGC	3 cut(s)	375, 491, 631
KasI	GGCGCC	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	617, 635
LweI	GCATC	1 cut(s)	229
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	125, 134
MhlI	GDGCHC	2 cut(s)	282, 432
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	408
Mly113I	GGCGCC	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	3 cut(s)	63, 318, 664
Mox20I	TGGCCA	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	2 cut(s)	148, 661
MspR9I	CCNGG	3 cut(s)	148, 149, 661
MwoI	GCNNNNNNNGC	6 cut(s)	67, 76, 372, 521, 611, 620
NarI	GGCGCC	1 cut(s)	631
NciI	CCSGG	3 cut(s)	148, 149, 661
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	614, 630, 698, 718
NlaIV	GGNNCC	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	607, 625, 635
PleI	GAGTC	1 cut(s)	649
PluTI	GGCGCC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	649
PspFI	CCCAGC	2 cut(s)	449, 569
PspN4I	GGNNCC	1 cut(s)	632
PspPI	GGNCC	2 cut(s)	188, 583
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SatI	GCNGC	3 cut(s)	606, 624, 634
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	188, 583
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	3 cut(s)	148, 149, 661
SduI	GDGCHC	2 cut(s)	282, 432
SetI	ASST	5 cut(s)	63, 115, 465, 610, 648
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	699
SfoI	GGCGCC	1 cut(s)	632
SinI	GGWCC	2 cut(s)	188, 583
SmaI	CCCGGG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	62, 431
SmoI	CTYRAG	2 cut(s)	62, 431
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	634
SspDI	GGCGCC	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	146, 147, 659
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	284, 484
TaqI	TCGA	2 cut(s)	312, 387
TasI	AATT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	636
TscAI	CASTG	2 cut(s)	682, 694
TseI	GCWGC	2 cut(s)	605, 623
TspDTI	ATGAA	2 cut(s)	277, 316
TspMI	CCCGGG	1 cut(s)	147
TspRI	CASTG	2 cut(s)	682, 694
VpaK11BI	GGWCC	2 cut(s)	188, 583
XapI	RAATTY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmaI	CCCGGG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.