Rmu_sc0005335.1_g000002

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005335.1
OG0000755
Physical Location & Seq
Forward (+)
798 .. 3584
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005335.1_g000002.1.cds

Sequence Viewer

Length: 1362 bp
atggcgtttcaaatgtcaaggatacagagtggtgatatagaagaaaatgttgaagaactaattcaaaaagctaatagtaatcattcaagtgcaagtttagcatcagtggactcggctgtcgataaggtctatagagctatggggcctggttttgaagggctaaagagctttaagaaaaccatgaaaatctattatgaagttttgtctataggcttgagttccaatgataaaattctttaccgccgggaattaatccagcacaggtggaataagatgcttcttgttctgtgtgtcatcgctctctcactggatcctttgttttgttatatccttgtggttaatgatgagaagaagtgccttggattggacagaacgttaggagctatagctagtgttctgcgatttgtcgtggatttcttttatgtgttttatatcatttatcaatttcgtgctagtgttgtcactctttgttctcaatcatcgaaagaaggtgaactggttccacatactcgggcaagagcatggagatatttgttgttgtacttcatattcgacatccttgtaattcttccacttccacaggtgatagtttatgttgtcattccaagattgaataactcgagacttttccatgcaacacagtcattgctggaggaaatgagattgaaggggctagagatagagttgtggatggccttccattcccttcctcggaagctcaagaagcgaatatggcaataccagaaatacaaatggcaagaaactaaaggtgttgatgtggagaattttcttcacaatcttccccgggacatcagaagggagacaaagcagtatctatgctctggtccactcagtcaagttccgatgcttcaaaatatggataaacgattgcttgatgcactatgtgatcatctgaagccagcactttacatagagcacagcttcatacttcggaaaggagaccctctcgatgagatgttgttcatcactcgtggcaaagtattgacttacaccacagaaggcaatgtaggcgctgattgtcttgaaaagggtgacttctatggccaagaacttcttgactgggtgctcaagacttatcccaatgccagcctatccaaccttcccttctcaaccaaaacagtccaagcgcataccaaagttgaagtgtttgctctaagggctaatgacttgaagaatgtagtctctaagttctggtggcttttccccagtttggaccaatcacgccaaccaagggcagctcatgctttgcaagcagcatggcgccgctataaacagcttcaaaagactcccccgtctaaggagggcagtgtttctcgcactgaccatgctgtagtcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

453

Amino Acids

52.41

Weight (kDa)

9.29

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 116, 1312
AccB1I GGYRCC 1 cut(s) 1281
AciI CCGC 2 cut(s) 241, 1285
AclI AACGTT 1 cut(s) 374
AclWI GGATC 2 cut(s) 305, 318
AcoI YGGCCR 1 cut(s) 1063
AcsI RAATTY 2 cut(s) 231, 784
AcuI CTGAAG 1 cut(s) 935
AcyI GRCGYC 1 cut(s) 1282
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 5 cut(s) 364, 711, 1231, 1252, 1318
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AluBI AGCT 9 cut(s) 71, 137, 168, 383, 389, 718, 942, 1259, 1297
AluI AGCT 9 cut(s) 71, 137, 168, 383, 389, 718, 942, 1259, 1297
Alw21I GWGCWC 2 cut(s) 939, 1089
Alw26I GTCTC 4 cut(s) 616, 815, 954, 1207
AlwI GGATC 2 cut(s) 305, 318
Ama87I CYCGRG 3 cut(s) 510, 619, 804
AoxI GGCC 3 cut(s) 143, 693, 1063
ApeKI GCWGC 2 cut(s) 1256, 1274
ApoI RAATTY 2 cut(s) 231, 784
AseI ATTAAT 1 cut(s) 251
Asp700I GAANNNNTTC 2 cut(s) 60, 498
AspLEI GCGC 3 cut(s) 1034, 1150, 1284
AspS9I GGNCC 3 cut(s) 143, 845, 1234
AsuC2I CCSGG 3 cut(s) 245, 805, 806
AsuHPI GGTGA 4 cut(s) 44, 503, 595, 1064
AvaI CYCGRG 3 cut(s) 510, 619, 804
AvaII GGWCC 2 cut(s) 845, 1234
BalI TGGCCA 1 cut(s) 1065
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 1281
BauI CACGAG 1 cut(s) 990
Bbv12I GWGCWC 2 cut(s) 939, 1089
BbvI GCAGC 2 cut(s) 1268, 1286
BccI CCATC 1 cut(s) 685
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 3 cut(s) 245, 805, 806
BcoDI GTCTC 4 cut(s) 616, 815, 954, 1207
BfaI CTAG 3 cut(s) 390, 453, 674
BfmI CTRYAG 4 cut(s) 130, 207, 384, 1350
BfoI RGCGCY 2 cut(s) 1035, 1285
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 3 cut(s) 1257, 1275, 1285
BlsI GCNGC 3 cut(s) 1258, 1276, 1286
Bme1390I CCNGG 4 cut(s) 147, 245, 805, 806
Bme18I GGWCC 2 cut(s) 845, 1234
BmeT110I CYCGRG 3 cut(s) 510, 619, 804
BmgT120I GGNCC 3 cut(s) 143, 845, 1234
BmiI GGNNCC 4 cut(s) 144, 312, 501, 1283
BmrFI CCNGG 4 cut(s) 147, 245, 805, 806
BmrI ACTGGG 2 cut(s) 1090, 1221
BmsI GCATC 4 cut(s) 110, 264, 855, 886
BmuI ACTGGG 2 cut(s) 1090, 1221
BplI GAGNNNNNCTC 2 cut(s) 951, 983
BpmI CTGGAG 1 cut(s) 671
BpuEI CTTGAG 3 cut(s) 235, 704, 1073
BpuMI CCSGG 3 cut(s) 245, 805, 806
BsaHI GRCGYC 1 cut(s) 1282
BsaI GGTCTC 1 cut(s) 954
BsaJI CCNNGG 5 cut(s) 358, 710, 803, 804, 1250
Bsc4I CCNNNNNNNGG 5 cut(s) 364, 711, 1231, 1252, 1318
Bse1I ACTGG 4 cut(s) 312, 501, 1085, 1227
Bse3DI GCAATG 2 cut(s) 644, 1030
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 5 cut(s) 358, 710, 803, 804, 1250
BseGI GGATG 2 cut(s) 555, 696
BseLI CCNNNNNNNGG 5 cut(s) 364, 711, 1231, 1252, 1318
BseMI GCAATG 2 cut(s) 644, 1030
BseMII CTCAG 1 cut(s) 865
BseNI ACTGG 4 cut(s) 312, 501, 1085, 1227
BseXI GCAGC 2 cut(s) 1268, 1286
BshFI GGCC 3 cut(s) 145, 695, 1065
BshNI GGYRCC 1 cut(s) 1281
BsiHKAI GWGCWC 2 cut(s) 939, 1089
BsiHKCI CYCGRG 3 cut(s) 510, 619, 804
BsiSI CCGG 2 cut(s) 244, 805
BslFI GGGAC 2 cut(s) 821, 1340
BslI CCNNNNNNNGG 5 cut(s) 364, 711, 1231, 1252, 1318
BsmAI GTCTC 4 cut(s) 616, 815, 954, 1207
BsmFI GGGAC 2 cut(s) 821, 1340
BsnI GGCC 3 cut(s) 145, 695, 1065
Bso31I GGTCTC 1 cut(s) 954
BsoBI CYCGRG 3 cut(s) 510, 619, 804
Bsp1286I GDGCHC 2 cut(s) 939, 1089
Bsp143I GATC 2 cut(s) 310, 907
BspACI CCGC 2 cut(s) 241, 1285
BspANI GGCC 3 cut(s) 145, 695, 1065
BspCNI CTCAG 1 cut(s) 864
BspLI GGNNCC 4 cut(s) 144, 312, 501, 1283
BspPI GGATC 2 cut(s) 305, 318
BspT107I GGYRCC 1 cut(s) 1281
BspTNI GGTCTC 1 cut(s) 954
BsrDI GCAATG 2 cut(s) 644, 1030
BsrI ACTGG 4 cut(s) 312, 501, 1085, 1227
BssECI CCNNGG 5 cut(s) 358, 710, 803, 804, 1250
BssMI GATC 2 cut(s) 310, 907
BssNI GRCGYC 1 cut(s) 1282
BssSI CACGAG 1 cut(s) 990
BssT1I CCWWGG 2 cut(s) 358, 1250
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 642, 1141
BstACI GRCGYC 1 cut(s) 1282
BstAPI GCANNNNNTGC 1 cut(s) 1262
BstC8I GCNNGC 3 cut(s) 921, 1108, 1272
BstDEI CTNAG 4 cut(s) 851, 1175, 1206, 1317
BstF5I GGATG 2 cut(s) 555, 696
BstH2I RGCGCY 2 cut(s) 1035, 1285
BstHHI GCGC 3 cut(s) 1034, 1150, 1284
BstKTI GATC 2 cut(s) 313, 910
BstMAI GTCTC 4 cut(s) 616, 815, 954, 1207
BstMBI GATC 2 cut(s) 310, 907
BstMWI GCNNNNNNNGC 7 cut(s) 98, 724, 733, 1029, 1178, 1262, 1271
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 4 cut(s) 145, 243, 803, 804
BstSFI CTRYAG 4 cut(s) 130, 207, 384, 1350
BstV1I GCAGC 2 cut(s) 1268, 1286
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 3 cut(s) 145, 695, 1065
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 555, 696
BtsI GCAGTG 1 cut(s) 1333
BtsIMutI CAGTG 4 cut(s) 111, 305, 1333, 1338
Cac8I GCNNGC 3 cut(s) 921, 1108, 1272
CfoI GCGC 3 cut(s) 1034, 1150, 1284
Cfr13I GGNCC 3 cut(s) 143, 845, 1234
Cfr9I CCCGGG 1 cut(s) 804
Csp6I GTAC 1 cut(s) 541
CviAII CATG 6 cut(s) 181, 522, 632, 1262, 1278, 1346
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 4 cut(s) 851, 1175, 1206, 1317
DinI GGCGCC 1 cut(s) 1283
DpnI GATC 2 cut(s) 312, 909
DpnII GATC 2 cut(s) 310, 907
DraIII CACNNNGTG 1 cut(s) 905
DrdI GACNNNNNNGTC 2 cut(s) 116, 1312
DseDI GACNNNNNNGTC 2 cut(s) 116, 1312
EaeI YGGCCR 1 cut(s) 1063
Eco130I CCWWGG 2 cut(s) 358, 1250
Eco31I GGTCTC 1 cut(s) 954
Eco47I GGWCC 2 cut(s) 845, 1234
Eco57I CTGAAG 1 cut(s) 935
Eco88I CYCGRG 3 cut(s) 510, 619, 804
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 358, 1250
EgeI GGCGCC 1 cut(s) 1283
EheI GGCGCC 1 cut(s) 1283
ErhI CCWWGG 2 cut(s) 358, 1250
FaeI CATG 6 cut(s) 184, 525, 635, 1265, 1281, 1349
FalI AAGNNNNNCTT 4 cut(s) 1040, 1072, 1059, 1091
FaqI GGGAC 2 cut(s) 821, 1340
FatI CATG 6 cut(s) 180, 521, 631, 1261, 1277, 1345
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 3 cut(s) 1257, 1275, 1285
FokI GGATG 2 cut(s) 542, 703
Fsp4HI GCNGC 3 cut(s) 1257, 1275, 1285
FspBI CTAG 3 cut(s) 390, 453, 674
GlaI GCGC 3 cut(s) 1033, 1149, 1283
GluI GCNGC 3 cut(s) 1257, 1275, 1285
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 2 cut(s) 1035, 1285
HaeIII GGCC 3 cut(s) 145, 695, 1065
HapII CCGG 2 cut(s) 244, 805
HhaI GCGC 3 cut(s) 1034, 1150, 1284
Hin1I GRCGYC 1 cut(s) 1282
Hin1II CATG 6 cut(s) 184, 525, 635, 1265, 1281, 1349
Hin6I GCGC 3 cut(s) 1032, 1148, 1282
HinP1I GCGC 3 cut(s) 1032, 1148, 1282
HinfI GANTC 2 cut(s) 110, 1306
HpaII CCGG 2 cut(s) 244, 805
HphI GGTGA 4 cut(s) 44, 503, 595, 1064
Hpy166II GTNNAC 3 cut(s) 109, 494, 848
Hpy188I TCNGA 5 cut(s) 714, 815, 864, 915, 954
Hpy188III TCNNGA 6 cut(s) 621, 721, 968, 1043, 1076, 1090
Hpy8I GTNNAC 3 cut(s) 109, 494, 848
HpyAV CCTTC 9 cut(s) 149, 482, 661, 706, 716, 810, 1013, 1130, 1135
HpyCH4III ACNGT 2 cut(s) 642, 1141
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 4 cut(s) 92, 635, 899, 1270
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 724, 733, 1029, 1178, 1262, 1271
HpyF3I CTNAG 4 cut(s) 851, 1175, 1206, 1317
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 1282
Hsp92II CATG 6 cut(s) 184, 525, 635, 1265, 1281, 1349
HspAI GCGC 3 cut(s) 1032, 1148, 1282
KasI GGCGCC 1 cut(s) 1281
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 2 cut(s) 310, 907
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 2 cut(s) 1268, 1286
LweI GCATC 4 cut(s) 110, 264, 855, 886
MaeI CTAG 3 cut(s) 390, 453, 674
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 460, 1052
MalI GATC 2 cut(s) 312, 909
MboI GATC 2 cut(s) 310, 907
MboII GAAGA 7 cut(s) 53, 65, 361, 560, 782, 791, 1204
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 939, 1089
MlsI TGGCCA 1 cut(s) 1065
MluCI AATT 6 cut(s) 60, 231, 248, 443, 564, 784
MluNI TGGCCA 1 cut(s) 1065
Mly113I GGCGCC 1 cut(s) 1282
MlyI GAGTC 2 cut(s) 104, 1300
MmeI TCCRAC 1 cut(s) 1140
MnlI CCTC 4 cut(s) 646, 720, 975, 1315
Mox20I TGGCCA 1 cut(s) 1065
MroXI GAANNNNTTC 2 cut(s) 60, 498
MscI TGGCCA 1 cut(s) 1065
MseI TTAA 3 cut(s) 171, 251, 339
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 1065
MspI CCGG 2 cut(s) 244, 805
MspR9I CCNGG 4 cut(s) 147, 245, 805, 806
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 7 cut(s) 98, 724, 733, 1029, 1178, 1262, 1271
NarI GGCGCC 1 cut(s) 1282
NciI CCSGG 3 cut(s) 245, 805, 806
NdeII GATC 2 cut(s) 310, 907
NlaIII CATG 6 cut(s) 184, 525, 635, 1265, 1281, 1349
NlaIV GGNNCC 4 cut(s) 144, 312, 501, 1283
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 460, 1052
PaeR7I CTCGAG 1 cut(s) 619
PdmI GAANNNNTTC 2 cut(s) 60, 498
PkrI GCNGC 3 cut(s) 1258, 1276, 1286
PleI GAGTC 2 cut(s) 104, 1300
PluTI GGCGCC 1 cut(s) 1285
PpsI GAGTC 2 cut(s) 104, 1300
PshBI ATTAAT 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 144, 312, 501, 1283
PspPI GGNCC 3 cut(s) 143, 845, 1234
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 171, 251, 339
SatI GCNGC 3 cut(s) 1257, 1275, 1285
Sau3AI GATC 2 cut(s) 310, 907
Sau96I GGNCC 3 cut(s) 143, 845, 1234
SchI GAGTC 2 cut(s) 104, 1300
ScrFI CCNGG 4 cut(s) 147, 245, 805, 806
SduI GDGCHC 2 cut(s) 939, 1089
SfaNI GCATC 4 cut(s) 110, 264, 855, 886
SfcI CTRYAG 4 cut(s) 130, 207, 384, 1350
SfoI GGCGCC 1 cut(s) 1283
Sfr274I CTCGAG 1 cut(s) 619
SinI GGWCC 2 cut(s) 845, 1234
SlaI CTCGAG 1 cut(s) 619
SmaI CCCGGG 1 cut(s) 806
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 4 cut(s) 214, 619, 719, 1088
SmoI CTYRAG 4 cut(s) 214, 619, 719, 1088
Sse9I AATT 6 cut(s) 60, 231, 248, 443, 564, 784
SsiI CCGC 2 cut(s) 241, 1285
SspDI GGCGCC 1 cut(s) 1281
SspMI CTAG 3 cut(s) 390, 453, 674
StyD4I CCNGG 4 cut(s) 145, 243, 803, 804
StyI CCWWGG 2 cut(s) 358, 1250
TaaI ACNGT 2 cut(s) 642, 1141
TaiI ACGT 1 cut(s) 377
TaqI TCGA 5 cut(s) 120, 482, 552, 620, 969
TasI AATT 6 cut(s) 60, 231, 248, 443, 564, 784
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 1287
Tru1I TTAA 3 cut(s) 171, 251, 339
Tru9I TTAA 3 cut(s) 171, 251, 339
TscAI CASTG 4 cut(s) 111, 312, 1333, 1345
TseFI GTSAC 2 cut(s) 460, 1052
TseI GCWGC 2 cut(s) 1256, 1274
Tsp45I GTSAC 2 cut(s) 460, 1052
TspDTI ATGAA 5 cut(s) 197, 210, 535, 934, 973
TspMI CCCGGG 1 cut(s) 804
TspRI CASTG 4 cut(s) 111, 312, 1333, 1345
VpaK11BI GGWCC 2 cut(s) 845, 1234
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 2 cut(s) 231, 784
XhoI CTCGAG 1 cut(s) 619
XmaI CCCGGG 1 cut(s) 804
XmnI GAANNNNTTC 2 cut(s) 60, 498
XspI CTAG 3 cut(s) 390, 453, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.