Rh1CG413300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67549042 .. 67550906
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG413300.1

Sequence Viewer

Length: 846 bp
ATGGCGTTTCAAATGTCAAGGATACAGAGTGGTGATATAGAAGAAAATGGTGAAGAACTAATTCAAAAAGCTAATAGTAATCATTCAAGTGCAAGTTTAGCATCAGTGGACTCGGCTGTCGATAAGGTCTATAGAGCTATGGGGCCTGGTTTTGAAGGGCTAAAGAGCTTTAGGAAAACCATGAAAATCTATTATGAAGTTTTGTCTATAGGCTTGAGTTCCAATGATAAAATTCTTTACCGCCGGGAATTAATCCAGCACAGAACATCTGAAGCTGGAAGATCTTTGAGTCTCAATGCAGCCATAGCTGGTGCACGAGCAGTTGCTAAACAGTTCTCCAAAAAAGCTCAAACTTTCCCAACTACCTCCGTAAATGATGCAGCCAAATCTGTGACAGTTCAAATCAAGTGTGAATCTTTTGAACGGGGTAGAGCAATGACCGGTGAACTGGTTCCACATACTCGGGCAAGAGCATGGAGATATTTGTTGTTGTACTTCATATTCGACATCCTTGTAATTCTTCCACTTCCACAGGTGATAGTTTATGTTATCATTCCAAGATTGAATAACTCGAGACTTTTCCATGCAACACAGTCATTGTACTTCATAGTTATCTTTCAATACGTGCTAAGGGTTCTTCGAATCTGCTCATTGTTAAAAGAAGCCACAAGTCCTTCGGGCATCCTTGCTGAAACTGCATGGGCTAAAGCTGCCTTTAATCTTTTTCTTTATATGCTTGCCAGTCATAAAGGAAAACATCTTGCTGGCGAAAATCCTGTAAAATGCATTCTACTGCTCACTGTTCGTTATATTGTGACGATACTTTTGGAGCTAGCACTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

281

Amino Acids

31.48

Weight (kDa)

9.73

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AciI CCGC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 2 cut(s) 494, 602
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 8 cut(s) 11, 65, 87, 155, 401, 422, 565, 620
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 8 cut(s) 71, 137, 168, 275, 308, 347, 710, 832
AluI AGCT 8 cut(s) 71, 137, 168, 275, 308, 347, 710, 832
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 296, 568
Alw44I GTGCAC 1 cut(s) 312
Ama87I CYCGRG 2 cut(s) 462, 571
AoxI GGCC 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 3 cut(s) 299, 380, 710
ApoI RAATTY 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
AseI ATTAAT 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 2 cut(s) 60, 450
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 4 cut(s) 44, 62, 455, 547
AsuII TTCGAA 1 cut(s) 640
AsuNHI GCTAGC 1 cut(s) 832
AvaI CYCGRG 2 cut(s) 462, 571
BaeGI GKGCMC 1 cut(s) 316
BauI CACGAG 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 311, 392, 697
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 15
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 296, 568
BfaI CTAG 1 cut(s) 833
BfmI CTRYAG 2 cut(s) 130, 207
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 281
BisI GCNGC 3 cut(s) 300, 381, 711
BlsI GCNGC 3 cut(s) 301, 382, 712
Bme1390I CCNGG 2 cut(s) 147, 245
BmeT110I CYCGRG 2 cut(s) 462, 571
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 144, 453
BmrFI CCNGG 2 cut(s) 147, 245
BmsI GCATC 3 cut(s) 110, 367, 690
BmtI GCTAGC 1 cut(s) 836
Bpu10I CCTNAGC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 625
BsaWI WCCGGW 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 453, 741
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 507, 681
BseMI GCAATG 1 cut(s) 441
BseNI ACTGG 2 cut(s) 453, 741
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 3 cut(s) 311, 392, 697
BshFI GGCC 1 cut(s) 145
BshTI ACCGGT 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 2 cut(s) 462, 571
BsiSI CCGG 2 cut(s) 244, 441
BsmAI GTCTC 2 cut(s) 296, 568
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 462, 571
Bsp119I TTCGAA 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 144, 453
BspOI GCTAGC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 2 cut(s) 453, 741
BssAI RCCGGY 1 cut(s) 440
BssMI GATC 1 cut(s) 281
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 4 cut(s) 333, 397, 594, 802
BstBAI YACGTR 1 cut(s) 625
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 3 cut(s) 738, 766, 834
BstDEI CTNAG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 507, 681
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 2 cut(s) 296, 568
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 4 cut(s) 98, 305, 695, 710
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 243
BstSFI CTRYAG 2 cut(s) 130, 207
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 311, 392, 697
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 507, 681
BtsIMutI CAGTG 2 cut(s) 111, 798
Cac8I GCNNGC 3 cut(s) 738, 766, 834
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 493, 601
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 4 cut(s) 181, 474, 584, 699
CviQI GTAC 2 cut(s) 493, 601
DdeI CTNAG 1 cut(s) 629
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 462, 571
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 788
FaeI CATG 4 cut(s) 184, 477, 587, 702
FatI CATG 4 cut(s) 180, 473, 583, 698
Fnu4HI GCNGC 3 cut(s) 300, 381, 711
FokI GGATG 2 cut(s) 494, 668
Fsp4HI GCNGC 3 cut(s) 300, 381, 711
FspBI CTAG 1 cut(s) 833
GluI GCNGC 3 cut(s) 300, 381, 711
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 244, 441
Hin1II CATG 4 cut(s) 184, 477, 587, 702
HinfI GANTC 4 cut(s) 110, 289, 413, 642
HpaII CCGG 2 cut(s) 244, 441
HphI GGTGA 4 cut(s) 44, 62, 455, 547
Hpy166II GTNNAC 3 cut(s) 109, 314, 446
Hpy188I TCNGA 2 cut(s) 271, 845
Hpy188III TCNNGA 1 cut(s) 573
Hpy8I GTNNAC 3 cut(s) 109, 314, 446
HpyAV CCTTC 2 cut(s) 149, 684
HpyCH4III ACNGT 4 cut(s) 333, 397, 594, 802
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 7 cut(s) 92, 299, 314, 380, 587, 698, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 305, 695, 710
HpyF3I CTNAG 1 cut(s) 629
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 4 cut(s) 184, 477, 587, 702
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 3 cut(s) 311, 392, 697
LweI GCATC 3 cut(s) 110, 367, 690
MaeI CTAG 1 cut(s) 833
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 391, 814
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 5 cut(s) 53, 65, 291, 512, 629
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 4 cut(s) 60, 231, 248, 516
MlyI GAGTC 2 cut(s) 104, 298
MnlI CCTC 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 788
MroXI GAANNNNTTC 2 cut(s) 60, 450
MseI TTAA 3 cut(s) 251, 656, 717
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 244, 441
MspR9I CCNGG 2 cut(s) 147, 245
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 98, 305, 695, 710
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 281
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 4 cut(s) 184, 477, 587, 702
NlaIV GGNNCC 2 cut(s) 144, 453
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 391, 814
NsiI ATGCAT 1 cut(s) 788
NspV TTCGAA 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 571
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 2 cut(s) 60, 450
PfeI GAWTC 2 cut(s) 413, 642
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 3 cut(s) 301, 382, 712
PleI GAGTC 2 cut(s) 104, 297
PpsI GAGTC 2 cut(s) 104, 297
Ppu21I YACGTR 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 144, 453
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 494, 602
RsaNI GTAC 2 cut(s) 493, 601
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 251, 656, 717
SatI GCNGC 3 cut(s) 300, 381, 711
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 2 cut(s) 104, 298
ScrFI CCNGG 2 cut(s) 147, 245
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 3 cut(s) 110, 367, 690
SfcI CTRYAG 2 cut(s) 130, 207
Sfr274I CTCGAG 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 640
SlaI CTCGAG 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 214, 571
SmoI CTYRAG 2 cut(s) 214, 571
Sse9I AATT 4 cut(s) 60, 231, 248, 516
SsiI CCGC 1 cut(s) 241
SspMI CTAG 1 cut(s) 833
StyD4I CCNGG 2 cut(s) 145, 243
TaaI ACNGT 4 cut(s) 333, 397, 594, 802
TaiI ACGT 1 cut(s) 627
TaqI TCGA 4 cut(s) 120, 504, 572, 640
TasI AATT 4 cut(s) 60, 231, 248, 516
TatI WGTACW 2 cut(s) 492, 600
TfiI GAWTC 2 cut(s) 413, 642
Tru1I TTAA 3 cut(s) 251, 656, 717
Tru9I TTAA 3 cut(s) 251, 656, 717
TscAI CASTG 2 cut(s) 111, 805
TseFI GTSAC 2 cut(s) 391, 814
TseI GCWGC 3 cut(s) 299, 380, 710
Tsp45I GTSAC 2 cut(s) 391, 814
TspDTI ATGAA 4 cut(s) 197, 210, 487, 595
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 2 cut(s) 111, 805
VneI GTGCAC 1 cut(s) 312
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 571
XmnI GAANNNNTTC 2 cut(s) 60, 450
XspI CTAG 1 cut(s) 833
Zsp2I ATGCAT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.