Rw5G015040

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
18173855 .. 18177486
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015040.1

Sequence Viewer

Length: 333 bp
ATGGGGACTTGTGTCAGCTGTAAAGTTAGTTGCTTCATTGCTATAATATTAATATTGTTTTGTATTCAGGGGAAATCGGCTACTGCTGTGACCGGAAGAGCCACTTGGACTTTTCTTCACACTCTTGCTGCTCAGGTGCTAGTTTTTGCTGTAGTTCCCAATATAAATAACTCCAGAATCTATAATGCTGCAAAGTCCTTGAACTTTTTATTTATGCTGAGGGTTCTTCGAACTTGCTCCTTGTTAACACTCATTATAAGGGCTTCTGGCATCCTTGCTGAATCTGCATGGGCTAATCTCTCTTTCTTTATGCTGGCAAGTCATGCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

11.96

Weight (kDa)

9.83

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AgsI TTSAA 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 128, 188
AseI ATTAAT 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 229
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 115, 175
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 129, 189
BlsI GCNGC 2 cut(s) 130, 190
BmsI GCATC 1 cut(s) 279
BoxI GACNNNNGTC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 2 cut(s) 132, 218
Bpu14I TTCGAA 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 36
BseGI GGATG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 146, 209
BseXI GCAGC 2 cut(s) 115, 175
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 145, 210
BspQI GCTCTTC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 132, 218
BstF5I GGATG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 284, 323
BstPAI GACNNNNGTC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 115, 175
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 315
CviAII CATG 2 cut(s) 288, 323
CviJI RGCY 5 cut(s) 18, 80, 101, 263, 293
CviKI_1 RGCY 5 cut(s) 18, 80, 101, 263, 293
DdeI CTNAG 2 cut(s) 132, 218
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
FaeI CATG 2 cut(s) 291, 326
FaiI YATR 9 cut(s) 44, 164, 183, 215, 257, 289, 311, 324, 331
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 287, 322
Fnu4HI GCNGC 2 cut(s) 129, 189
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 129, 189
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 129, 189
GsuI CTGGAG 1 cut(s) 157
HapII CCGG 1 cut(s) 93
Hin1II CATG 2 cut(s) 291, 326
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 177, 281
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 191, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 323
HpyF3I CTNAG 2 cut(s) 132, 218
Hsp92II CATG 2 cut(s) 291, 326
KspAI GTTAAC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 53, 106, 119, 187, 252, 299
Lsp1109I GCAGC 2 cut(s) 115, 175
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 3 cut(s) 107, 108, 218
MnlI CCTC 1 cut(s) 213
MseI TTAA 2 cut(s) 50, 245
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 284, 323
NlaIII CATG 2 cut(s) 291, 326
NmuCI GTSAC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 177, 281
PkrI GCNGC 2 cut(s) 130, 190
PshAI GACNNNNGTC 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 50
PsiI TTATAA 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 50, 245
SatI GCNGC 2 cut(s) 129, 189
SetI ASST 2 cut(s) 20, 138
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 229
SspI AATATT 2 cut(s) 48, 54
SspMI CTAG 1 cut(s) 140
TaqI TCGA 1 cut(s) 229
TfiI GAWTC 2 cut(s) 177, 281
Tru1I TTAA 2 cut(s) 50, 245
Tru9I TTAA 2 cut(s) 50, 245
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 128, 188
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 25
VspI ATTAAT 1 cut(s) 50
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.