Rmu_sc0002387.1_g000005

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002387.1
OG0000755
Physical Location & Seq
Forward (+)
18688 .. 19594
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002387.1_g000005.1.cds

Sequence Viewer

Length: 645 bp
atggaggttcaaaattcagggattccggatgatttagaagaaaatactgcagtaaaatgtgtcagagtttttactggaaaaagaaatcatcaatttgttagatttgatgataggagatcaaatgaagatgaagatgaatatgagaggatagttagaaatgacagcagtcctgagagagatatggtctttggaaaccatagcgtttggaaagcttgctcaaaagggcttataagtagtattaaagaagcactcaatcattgtggagcttatttggccgacaagctacttctgtggtggaatgagatacttctagttttgtctgttacttcgctctcactggatccgttattctgctatctccttattgtcaacgatgaaaagcagtgccttagattggacagtacaatggggactttagctattgttttgcgctcagtcattgacttattatatacattttatatctttttccaacttcgtgctactgttgttactctttctcccagaacatatggagaagctgaattagttccagagactcggataacagcatggagatctttgttgttgtacttcctcgtggacatatttatcattcttccactcccacaagtaagggaactcactttgctatacatatcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

214

Amino Acids

24.74

Weight (kDa)

5.05

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 25
AclWI GGATC 2 cut(s) 335, 348
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 2 cut(s) 403, 572
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 5 cut(s) 212, 266, 283, 419, 521
AluI AGCT 5 cut(s) 212, 266, 283, 419, 521
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 2 cut(s) 335, 348
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 432
BamHI GGATCC 1 cut(s) 340
BauI CACGAG 1 cut(s) 578
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 79, 342
BseAI TCCGGA 1 cut(s) 25
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 162, 447
BseNI ACTGG 2 cut(s) 79, 342
BshFI GGCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 275
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 116, 340, 557
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 2 cut(s) 163, 446
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 335, 348
BsrI ACTGG 2 cut(s) 79, 342
BssMI GATC 3 cut(s) 116, 340, 557
BssSI CACGAG 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 401, 487
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 171, 389, 433
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 3 cut(s) 119, 343, 560
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 3 cut(s) 116, 340, 557
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 340, 557
BstYI RGATCY 2 cut(s) 340, 557
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 335, 389
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 432
Csp6I GTAC 2 cut(s) 402, 571
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 552
CviJI RGCY 7 cut(s) 212, 226, 266, 275, 283, 419, 521
CviKI_1 RGCY 7 cut(s) 212, 226, 266, 275, 283, 419, 521
CviQI GTAC 2 cut(s) 402, 571
DdeI CTNAG 3 cut(s) 171, 389, 433
DpnI GATC 3 cut(s) 118, 342, 559
DpnII GATC 3 cut(s) 116, 340, 557
EaeI YGGCCR 1 cut(s) 273
FaeI CATG 1 cut(s) 555
FaqI GGGAC 1 cut(s) 424
FatI CATG 1 cut(s) 551
FauNDI CATATG 1 cut(s) 511
FokI GGATG 1 cut(s) 41
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 432
Hin1II CATG 1 cut(s) 555
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 2 cut(s) 22, 538
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 370, 583
Hpy188I TCNGA 2 cut(s) 65, 543
Hpy188III TCNNGA 3 cut(s) 26, 170, 533
Hpy8I GTNNAC 2 cut(s) 370, 583
HpyCH4III ACNGT 2 cut(s) 401, 487
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 3 cut(s) 171, 389, 433
Hsp92II CATG 1 cut(s) 555
HspAI GCGC 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 116, 340, 557
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 7 cut(s) 3, 39, 60, 183, 323, 517, 546
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 322, 490
MalI GATC 3 cut(s) 118, 342, 559
MboI GATC 3 cut(s) 116, 340, 557
MboII GAAGA 4 cut(s) 50, 137, 143, 590
MflI RGATCY 2 cut(s) 340, 557
MluCI AATT 3 cut(s) 13, 92, 524
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 2 cut(s) 138, 587
MroI TCCGGA 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeI CATATG 1 cut(s) 511
NdeII GATC 3 cut(s) 116, 340, 557
NlaIII CATG 1 cut(s) 555
NlaIV GGNNCC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 165
PsiI TTATAA 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 2 cut(s) 340, 557
RsaI GTAC 2 cut(s) 403, 572
RsaNI GTAC 2 cut(s) 402, 571
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 116, 340, 557
SchI GAGTC 1 cut(s) 532
SetI ASST 6 cut(s) 9, 214, 268, 285, 421, 523
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 3 cut(s) 13, 92, 524
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 401, 487
TasI AATT 3 cut(s) 13, 92, 524
TatI WGTACW 2 cut(s) 401, 570
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 342, 389
TspDTI ATGAA 4 cut(s) 138, 144, 150, 390
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 342, 389
XapI RAATTY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.