Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

20258712 .. 20263577

Gene Structure 4866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATTATATTAGGAGAGTTGGAGAAACAATGACCGCTTACCATGAAGTTTTGGGTTCCAAGAGGAGTCGTCTTGGCCCGCGGGAGATCCGAAGGTTGAATGATGTGTATCTAATTTTTTGTGTAATTGCGCTCTCACTGGATCCGTTATTCTGTTATATCCTTGTTTTTAATGTTCAGAAGAAGTGCCTTAGATTGGACACAACACTGGGGACTCCAGTCGTTGTTTTGCGGTTCCTCGTCGATTTCTTATATATAATCCATCTGGTTTTTCAATTCCGTGCTGCTATTCGTAGTCTTTCTTCTCAAGCTTCTGGAAGAGTTGAGTTGTTTAAACAGATGCGGGCAATTGCATGGAGATATTTGTTCTTCTACTTCCCGGCAGACGTATTTGTGATTCTTCCACTGCCACAGGTCCTCATTTTTGCTATTGTTCCAAAACTAAATGCTTCAAGGGTTTTGGGTGCAACAAAATCATTGAACTTCATAGTTATCTTTCAATATGTGCTGAGGCTCCTTCGCATCTGTTCCTTATTGAAAAAAGTTACCAGTAATTCGGGCATCCTCGCTGGAACTGCATGGGGGTTAATCTCTTTCTATACATGCTCGCTAGTCATGTTGTCGGAGCCTTTTGGTATTTGTTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

217

Amino Acids

24.74

Weight (kDa)

9.9

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	5 cut(s)	36, 80, 82, 232, 343
AclWI	GGATC	3 cut(s)	82, 137, 150
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	6 cut(s)	100, 275, 453, 481, 500, 538
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	3 cut(s)	82, 137, 150
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	77, 415
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	647
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	77, 415
BmiI	GGNNCC	5 cut(s)	58, 144, 236, 515, 627
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	330, 531, 570
BmuI	ACTGGG	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	4 cut(s)	144, 213, 218, 549
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	4 cut(s)	144, 213, 218, 549
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	87, 142
BspACI	CCGC	5 cut(s)	36, 80, 82, 232, 343
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	5 cut(s)	58, 144, 236, 515, 627
BspPI	GGATC	3 cut(s)	82, 137, 150
BsrI	ACTGG	4 cut(s)	144, 213, 218, 549
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	2 cut(s)	87, 142
Bst6I	CTCTTC	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	80, 345, 608
BstDEI	CTNAG	2 cut(s)	191, 509
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	90, 145
BstMBI	GATC	2 cut(s)	87, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	606
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	647
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	87, 142
BstYI	RGATCY	2 cut(s)	87, 142
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	3 cut(s)	137, 206, 404
Cac8I	GCNNGC	3 cut(s)	80, 345, 608
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	77, 415
Cfr42I	CCGCGG	1 cut(s)	83
CviAII	CATG	5 cut(s)	44, 354, 579, 603, 616
CviJI	RGCY	4 cut(s)	78, 311, 514, 628
CviKI_1	RGCY	4 cut(s)	78, 311, 514, 628
DdeI	CTNAG	2 cut(s)	191, 509
DpnI	GATC	2 cut(s)	89, 144
DpnII	GATC	2 cut(s)	87, 142
DraI	TTTAAA	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	415
FaeI	CATG	5 cut(s)	47, 357, 582, 606, 619
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	43, 353, 578, 602, 615
FauI	CCCGC	3 cut(s)	75, 87, 336
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	47, 357, 582, 606, 619
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	3 cut(s)	67, 214, 397
HpaII	CCGG	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	92, 180, 625
Hpy188III	TCNNGA	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	87, 527
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	353, 467, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	2 cut(s)	191, 509
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	47, 357, 582, 606, 619
HspAI	GCGC	1 cut(s)	131
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	87, 142
LmnI	GCTCC	2 cut(s)	519, 625
LpnPI	CCDG	9 cut(s)	125, 194, 231, 251, 300, 393, 398, 555, 562
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	330, 531, 570
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	2 cut(s)	89, 144
MboI	GATC	2 cut(s)	87, 142
MboII	GAAGA	5 cut(s)	193, 294, 330, 361, 392
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	2 cut(s)	87, 142
MluCI	AATT	5 cut(s)	114, 126, 275, 348, 553
MlyI	GAGTC	2 cut(s)	76, 208
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	5 cut(s)	57, 248, 428, 504, 575
MseI	TTAA	3 cut(s)	171, 333, 587
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MssI	GTTTAAAC	1 cut(s)	334
MunI	CAATTG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	575
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	87, 142
NlaIII	CATG	5 cut(s)	47, 357, 582, 606, 619
NlaIV	GGNNCC	5 cut(s)	58, 144, 236, 515, 627
NspI	RCATGY	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	75, 208
PmeI	GTTTAAAC	1 cut(s)	334
PpsI	GAGTC	2 cut(s)	75, 208
PpuMI	RGGWCCY	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	5 cut(s)	58, 144, 236, 515, 627
PspPI	GGNCC	2 cut(s)	77, 415
PspPPI	RGGWCCY	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	87, 142
SacII	CCGCGG	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	171, 333, 587
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	87, 142
Sau96I	GGNCC	2 cut(s)	77, 415
SchI	GAGTC	2 cut(s)	76, 208
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	4 cut(s)	98, 313, 390, 417
SfaNI	GCATC	3 cut(s)	330, 531, 570
SfcI	CTRYAG	1 cut(s)	647
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	5 cut(s)	114, 126, 275, 348, 553
SsiI	CCGC	5 cut(s)	36, 80, 82, 232, 343
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	243
TasI	AATT	5 cut(s)	114, 126, 275, 348, 553
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	3 cut(s)	171, 333, 587
Tru9I	TTAA	3 cut(s)	171, 333, 587
TscAI	CASTG	3 cut(s)	144, 213, 411
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	60, 475
TspGWI	ACGGA	2 cut(s)	135, 269
TspRI	CASTG	3 cut(s)	144, 213, 411
VpaK11BI	GGWCC	1 cut(s)	415
XceI	RCATGY	1 cut(s)	606
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.