Rh1CG413400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000755
Physical Location & Seq
Forward (+)
67551356 .. 67552280
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG413400.1

Sequence Viewer

Length: 828 bp
ATGCATCACGAATTTAACACCTCTTATTGGCTTGGCAATAACTGCTGTCTTTTCTTCGTTGTGGAACAGACATATTTGCAATCGAAAACAGCAAGGCTGGAGGAAATGAGATTGAAGGGGCAAGAGATAGAGTTGTGGATGGCATTCCATTCCCTTCCTCGGAAGCTCAAGAAGCGAATATGGCAATACCAGAAATACAAATGGCAAGAAACTAAAGGTGTTGATGTGGAGAATTTTCTTCACAATCTTCCCCGGGACATCAGAAGGGAAACAAAGCAGTATCTATGCTCTGGTCCACTCAGTCAAGTTCCAATGCTTCAAAATATGGATAAACGATTGCTTGATGCAATATGTGATCATCTGAAGCCAGCACTTTACATAGAGCACAGCTTCATACTTCGGAAAGGAGACCCTCTCGATGAGATGTTGTTCATCACTCGTGGCAAAGTATTGACTTACACCACAGAAGGCAATGTAGGCGCTGATTGTCTTGAAAAGGGTGACTTCTATGGCCAAGAACTTCTTGACTGGGTGCTCAAGACTTATCCCAATGCCAGCCTATCCAACCTTCCCTTCTCAACCAAAACAGTCCAAGCGCATACCAAAGTTGAAGTGTTTGCTCTAAGGGCTAATGACTTGAAGAATGTAGTCTCTAAGTTCTGGTGGCTTTTCCCCAGTTTGGACCAATCACGCCAACCAAGGGCAGCTCATGCTTTGCAAGCAGCATGGCGCCGCTATAAACAGCTTCAAAAGACTCCCCCGTCTAAGGAGGGCAGTGTTTCTCGCACTGACCATGCTGTAGTCCCAGAACCCATGATAGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

275

Amino Acids

32.15

Weight (kDa)

9.16

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 760
AccB1I GGYRCC 1 cut(s) 729
AciI CCGC 1 cut(s) 733
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 2 cut(s) 11, 232
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 730
AfiI CCNNNNNNNGG 5 cut(s) 27, 159, 679, 700, 766
AgsI TTSAA 6 cut(s) 115, 320, 494, 611, 640, 749
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 4 cut(s) 166, 390, 707, 745
AluI AGCT 4 cut(s) 166, 390, 707, 745
Alw21I GWGCWC 2 cut(s) 387, 537
Alw26I GTCTC 2 cut(s) 402, 655
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 704, 722
ApoI RAATTY 2 cut(s) 11, 232
AspLEI GCGC 3 cut(s) 482, 598, 732
AspS9I GGNCC 2 cut(s) 293, 682
AsuC2I CCSGG 2 cut(s) 253, 254
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 2 cut(s) 293, 682
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 1 cut(s) 729
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 387, 537
BbvI GCAGC 2 cut(s) 716, 734
BccI CCATC 1 cut(s) 133
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 2 cut(s) 253, 254
BcoDI GTCTC 2 cut(s) 402, 655
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 2 cut(s) 483, 733
BisI GCNGC 3 cut(s) 705, 723, 733
BlsI GCNGC 3 cut(s) 706, 724, 734
Bme1390I CCNGG 2 cut(s) 253, 254
Bme18I GGWCC 2 cut(s) 293, 682
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 293, 682
BmiI GGNNCC 1 cut(s) 731
BmrFI CCNGG 2 cut(s) 253, 254
BmrI ACTGGG 2 cut(s) 538, 669
BmsI GCATC 2 cut(s) 13, 334
BmuI ACTGGG 2 cut(s) 538, 669
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 152, 521
BpuMI CCSGG 2 cut(s) 253, 254
BsaHI GRCGYC 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 4 cut(s) 158, 251, 252, 698
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 159, 679, 700, 766
Bse1I ACTGG 2 cut(s) 533, 675
Bse3DI GCAATG 1 cut(s) 478
BseDI CCNNGG 4 cut(s) 158, 251, 252, 698
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 27, 159, 679, 700, 766
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 2 cut(s) 533, 675
BseXI GCAGC 2 cut(s) 716, 734
BshFI GGCC 1 cut(s) 513
BshNI GGYRCC 1 cut(s) 729
BsiHKAI GWGCWC 2 cut(s) 387, 537
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 269, 788
BslI CCNNNNNNNGG 5 cut(s) 27, 159, 679, 700, 766
BsmAI GTCTC 2 cut(s) 402, 655
BsmFI GGGAC 2 cut(s) 269, 788
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 513
Bso31I GGTCTC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 387, 537
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 733
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 478
BsrI ACTGG 2 cut(s) 533, 675
BssECI CCNNGG 4 cut(s) 158, 251, 252, 698
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 730
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 730
BstAPI GCANNNNNTGC 2 cut(s) 42, 710
BstC8I GCNNGC 3 cut(s) 369, 556, 720
BstDEI CTNAG 4 cut(s) 299, 623, 654, 765
BstF5I GGATG 1 cut(s) 144
BstH2I RGCGCY 2 cut(s) 483, 733
BstHHI GCGC 3 cut(s) 482, 598, 732
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 402, 655
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 710, 719
BstSCI CCNGG 2 cut(s) 251, 252
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 716, 734
BsuRI GGCC 1 cut(s) 513
BtsCI GGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 781, 786
Cac8I GCNNGC 3 cut(s) 369, 556, 720
CfoI GCGC 3 cut(s) 482, 598, 732
Cfr13I GGNCC 2 cut(s) 293, 682
Cfr9I CCCGGG 1 cut(s) 252
CviAII CATG 4 cut(s) 710, 726, 794, 814
DdeI CTNAG 4 cut(s) 299, 623, 654, 765
DinI GGCGCC 1 cut(s) 731
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 760
DseDI GACNNNNNNGTC 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 293, 682
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 731
EheI GGCGCC 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 4 cut(s) 713, 729, 797, 817
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 507, 539
FaqI GGGAC 2 cut(s) 269, 788
FatI CATG 4 cut(s) 709, 725, 793, 813
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 705, 723, 733
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 705, 723, 733
GlaI GCGC 3 cut(s) 481, 597, 731
GluI GCNGC 3 cut(s) 705, 723, 733
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 2 cut(s) 483, 733
HaeIII GGCC 1 cut(s) 513
HapII CCGG 1 cut(s) 253
HhaI GCGC 3 cut(s) 482, 598, 732
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 4 cut(s) 713, 729, 797, 817
Hin6I GCGC 3 cut(s) 480, 596, 730
HinP1I GCGC 3 cut(s) 480, 596, 730
HinfI GANTC 1 cut(s) 754
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 4 cut(s) 162, 263, 363, 402
Hpy188III TCNNGA 6 cut(s) 8, 169, 416, 491, 524, 538
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 6 cut(s) 109, 164, 258, 461, 578, 583
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 4 cut(s) 4, 79, 347, 718
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 710, 719
HpyF3I CTNAG 4 cut(s) 299, 623, 654, 765
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 4 cut(s) 713, 729, 797, 817
HspAI GCGC 3 cut(s) 480, 596, 730
KasI GGCGCC 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 716, 734
LweI GCATC 2 cut(s) 13, 334
MaeIII GTNAC 1 cut(s) 500
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 4 cut(s) 46, 230, 239, 652
MhlI GDGCHC 2 cut(s) 387, 537
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 2 cut(s) 11, 232
MluNI TGGCCA 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 730
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 5 cut(s) 31, 94, 168, 423, 763
Mox20I TGGCCA 1 cut(s) 513
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 513
MseI TTAA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 253, 254
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 7 cut(s) 42, 172, 181, 477, 626, 710, 719
NarI GGCGCC 1 cut(s) 730
NciI CCSGG 2 cut(s) 253, 254
NdeII GATC 1 cut(s) 355
NlaIII CATG 4 cut(s) 713, 729, 797, 817
NlaIV GGNNCC 1 cut(s) 731
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 706, 724, 734
PleI GAGTC 1 cut(s) 748
PluTI GGCGCC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 748
PspN4I GGNNCC 1 cut(s) 731
PspPI GGNCC 2 cut(s) 293, 682
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 3 cut(s) 705, 723, 733
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 293, 682
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 253, 254
SduI GDGCHC 2 cut(s) 387, 537
SetI ASST 7 cut(s) 23, 168, 220, 392, 570, 709, 747
SfaNI GCATC 2 cut(s) 13, 334
SfcI CTRYAG 1 cut(s) 798
SfoI GGCGCC 1 cut(s) 731
SinI GGWCC 2 cut(s) 293, 682
SmaI CCCGGG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 167, 536
SmoI CTYRAG 2 cut(s) 167, 536
Sse9I AATT 2 cut(s) 11, 232
SsiI CCGC 1 cut(s) 733
SspDI GGCGCC 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 251, 252
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 83, 417
TasI AATT 2 cut(s) 11, 232
TauI GCSGC 1 cut(s) 735
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 781, 793
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 704, 722
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 2 cut(s) 382, 421
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 2 cut(s) 781, 793
VpaK11BI GGWCC 2 cut(s) 293, 682
XapI RAATTY 2 cut(s) 11, 232
XmaI CCCGGG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.