Rorug01G0420000

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000755
Physical Location & Seq
Reverse (-)
52164550 .. 52168984
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0420000.1

Sequence Viewer

Length: 1131 bp
ATGCCTTCGGCTGTCTCGCCGCGGTGGCAAGAGAAGGCTACTGGTTTCTTTTCTACCTCAGGGGTGAAGATTAAGGAAGCTGGACAAACGGCTGGGACATTTGTTGAGGAGGTCACTAAGGATGCTAAAGTTAATGTGTCTGATATGGCAGGGCGAGTTGGGTCAATGTTCAAGAGTCGATGGGCGATTCTTCAGCAGCCATCGACTAGACAAGCTGTGCAGGAGCGACTTATAACTGCTGCAGCTACGACTGGTACATTGTTCAGGAAGGGATTGTCGGAGACAAAGGACAAGGTTTCGGTTGGGAAGATAAAAGTTGAAGAGGTGGCAAAGAAGACTGCCCAAAAAAGCAAAACCATTCTGACTGACATTGAAAGATGGCAGAAGGGTGTTGCAAGCACTGATGTTTTTGGAGTTCCGATTGAAGTTACTGTGCAACGGCAACAATCTAGCAGGCCTATTCCTCATATTTTGGTGAACTGTGCAGATTATCTCATCTTATCAGGGCTAAACACACCATATCTGTTTAAAGGCGAGGGAGATAAAAAAGTTATCCAACAATTGATTTCGATGTATAACCAAGATTCAAATGCATCAATACCAGAGGGTGTAAGTTCAATAGATGTAGCGGCTCTAGTCAAATGTTACCTAGCTACCCTTCCTGAGCCACTAACCACACTTGAGCTTTATAACGAGATCAGAGGTGCTCGTTCTAGCATAAATGCAATGAGAAACACGCTGAAGAAGCTTCCTACTGTAAACTATACAACACTGGAATTTATTACTGCACTACTGCTGCGTGTTAGCCAGAAGTCAGTTCTTAACAAGATGGACACCCAAAGTCTTGCAATGGAGATGGCCCCTGTTATAATTTGGCAGAAGGGTCGGGCACCAGACCTATATAAAAAGTATTGGAATCAACCATTTAAAGGTCTTTCCAAGAAAAACTCGGATCCAGAGCCTACTTATAGTGCATGGGACATGCTTTCTGATGAAGGTGATACTGTAGATGATTCCATTCCCTTGGATGATGGAGTGGCTATTGACTTGGGCGCTATTGAGGTTGTTCAGTGTCTCATGGAACATCACAATGCGATTTTCACTGATGCAAATGAAACAGTCTGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

376

Amino Acids

41.58

Weight (kDa)

8.23

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 155 - 294 1.3e-30 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 233, 690, 869
AccB1I GGYRCC 1 cut(s) 889
AccII CGCG 1 cut(s) 22
AciI CCGC 3 cut(s) 20, 22, 629
AclWI GGATC 2 cut(s) 947, 960
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 2 cut(s) 176, 761
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 929
AgsI TTSAA 6 cut(s) 172, 320, 374, 425, 588, 618
AluBI AGCT 6 cut(s) 80, 215, 245, 653, 685, 748
AluI AGCT 6 cut(s) 80, 215, 245, 653, 685, 748
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 3 cut(s) 19, 275, 1079
AlwI GGATC 2 cut(s) 947, 960
AoxI GGCC 2 cut(s) 455, 858
ApeKI GCWGC 4 cut(s) 196, 239, 242, 796
ApoI RAATTY 1 cut(s) 776
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 1 cut(s) 859
AsuHPI GGTGA 3 cut(s) 76, 487, 1010
AxyI CCTNAGG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 4 cut(s) 208, 226, 254, 783
BccI CCATC 6 cut(s) 174, 208, 372, 823, 850, 1025
BceAI ACGGC 2 cut(s) 105, 455
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BcoDI GTCTC 3 cut(s) 19, 275, 1079
BfaI CTAG 5 cut(s) 207, 450, 635, 650, 714
BfmI CTRYAG 2 cut(s) 240, 1005
BfoI RGCGCY 1 cut(s) 1056
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 6 cut(s) 20, 197, 240, 243, 630, 797
BlsI GCNGC 6 cut(s) 21, 198, 241, 244, 631, 798
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 3 cut(s) 861, 891, 954
BmsI GCATC 3 cut(s) 112, 602, 1096
BpiI GAAGAC 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 20, 1023
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 46, 256, 777
Bse21I CCTNAGG 1 cut(s) 58
Bse3DI GCAATG 2 cut(s) 732, 855
BseDI CCNNGG 2 cut(s) 20, 1023
BseGI GGATG 2 cut(s) 127, 1033
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMI GCAATG 2 cut(s) 732, 855
BseMII CTCAG 2 cut(s) 72, 654
BseNI ACTGG 3 cut(s) 46, 256, 777
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 4 cut(s) 208, 226, 254, 783
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 3 cut(s) 239, 504, 771
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 457, 860
BshNI GGYRCC 1 cut(s) 889
BsiHKAI GWGCWC 1 cut(s) 709
BslFI GGGAC 2 cut(s) 109, 992
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 3 cut(s) 19, 275, 1079
BsmFI GGGAC 2 cut(s) 109, 992
BsnI GGCC 2 cut(s) 457, 860
Bsp1286I GDGCHC 2 cut(s) 709, 892
Bsp143I GATC 2 cut(s) 696, 952
BspACI CCGC 3 cut(s) 20, 22, 629
BspANI GGCC 2 cut(s) 457, 860
BspCNI CTCAG 2 cut(s) 71, 655
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 861, 891, 954
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 947, 960
BspT107I GGYRCC 1 cut(s) 889
BsrDI GCAATG 2 cut(s) 732, 855
BsrI ACTGG 3 cut(s) 46, 256, 777
BssECI CCNNGG 2 cut(s) 20, 1023
BssMI GATC 2 cut(s) 696, 952
BssT1I CCWWGG 1 cut(s) 1023
Bst4CI ACNGT 5 cut(s) 433, 482, 757, 1006, 1120
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 397, 455
BstDEI CTNAG 3 cut(s) 58, 117, 663
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 127, 1033
BstFNI CGCG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 2 cut(s) 699, 955
BstMAI GTCTC 3 cut(s) 19, 275, 1079
BstMBI GATC 2 cut(s) 696, 952
BstMWI GCNNNNNNNGC 2 cut(s) 25, 745
BstNSI RCATGY 1 cut(s) 985
BstSFI CTRYAG 2 cut(s) 240, 1005
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 4 cut(s) 208, 226, 254, 783
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 457, 860
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 127, 1033
BtsIMutI CAGTG 4 cut(s) 399, 770, 1076, 1101
Cac8I GCNNGC 2 cut(s) 397, 455
CfoI GCGC 1 cut(s) 1055
Cfr13I GGNCC 1 cut(s) 859
Cfr42I CCGCGG 1 cut(s) 23
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 975, 982, 1078
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 58, 117, 663
DpnI GATC 2 cut(s) 698, 954
DpnII GATC 2 cut(s) 696, 952
DraI TTTAAA 2 cut(s) 529, 928
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 1023
Eco147I AGGCCT 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 176, 761
Eco81I CCTNAGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 1023
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 3 cut(s) 978, 985, 1081
FaqI GGGAC 2 cut(s) 109, 992
FatI CATG 3 cut(s) 974, 981, 1077
Fnu4HI GCNGC 6 cut(s) 20, 197, 240, 243, 630, 797
FokI GGATG 2 cut(s) 134, 1040
Fsp4HI GCNGC 6 cut(s) 20, 197, 240, 243, 630, 797
FspBI CTAG 5 cut(s) 207, 450, 635, 650, 714
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 6 cut(s) 20, 197, 240, 243, 630, 797
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 2 cut(s) 457, 860
HhaI GCGC 1 cut(s) 1055
Hin1II CATG 3 cut(s) 978, 985, 1081
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 175, 187, 584, 916, 1013
HphI GGTGA 3 cut(s) 76, 487, 1010
Hpy166II GTNNAC 2 cut(s) 478, 760
Hpy188I TCNGA 7 cut(s) 142, 280, 363, 420, 701, 952, 991
Hpy188III TCNNGA 5 cut(s) 172, 265, 662, 956, 1123
Hpy8I GTNNAC 2 cut(s) 478, 760
HpyAV CCTTC 7 cut(s) 15, 28, 262, 379, 668, 874, 989
HpyCH4III ACNGT 5 cut(s) 433, 482, 757, 1006, 1120
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 745
HpyF3I CTNAG 3 cut(s) 58, 117, 663
Hsp92II CATG 3 cut(s) 978, 985, 1081
HspAI GCGC 1 cut(s) 1053
KspI CCGCGG 1 cut(s) 23
Kzo9I GATC 2 cut(s) 696, 952
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 208, 226, 254, 783
LweI GCATC 3 cut(s) 112, 602, 1096
MaeI CTAG 5 cut(s) 207, 450, 635, 650, 714
MaeIII GTNAC 3 cut(s) 112, 427, 644
MalI GATC 2 cut(s) 698, 954
MboI GATC 2 cut(s) 696, 952
MboII GAAGA 6 cut(s) 79, 182, 319, 332, 346, 754
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 709, 892
MluCI AATT 3 cut(s) 560, 776, 870
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 258, 580
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 5 cut(s) 72, 132, 528, 822, 927
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 22
MunI CAATTG 1 cut(s) 560
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 25, 745
NdeII GATC 2 cut(s) 696, 952
NlaIII CATG 3 cut(s) 978, 985, 1081
NlaIV GGNNCC 3 cut(s) 861, 891, 954
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 985
PceI AGGCCT 1 cut(s) 457
PfeI GAWTC 4 cut(s) 187, 584, 916, 1013
PkrI GCNGC 6 cut(s) 21, 198, 241, 244, 631, 798
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PsiI TTATAA 3 cut(s) 233, 690, 869
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 861, 891, 954
PspPI GGNCC 1 cut(s) 859
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 1089
SacII CCGCGG 1 cut(s) 23
SaqAI TTAA 5 cut(s) 72, 132, 528, 822, 927
SatI GCNGC 6 cut(s) 20, 197, 240, 243, 630, 797
Sau3AI GATC 2 cut(s) 696, 952
Sau96I GGNCC 1 cut(s) 859
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 2 cut(s) 709, 892
SfaNI GCATC 3 cut(s) 112, 602, 1096
SfcI CTRYAG 2 cut(s) 240, 1005
Sfr303I CCGCGG 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 3 cut(s) 560, 776, 870
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 3 cut(s) 20, 22, 629
SspMI CTAG 5 cut(s) 207, 450, 635, 650, 714
StuI AGGCCT 1 cut(s) 457
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 5 cut(s) 433, 482, 757, 1006, 1120
TaqI TCGA 3 cut(s) 178, 203, 569
TasI AATT 3 cut(s) 560, 776, 870
TauI GCSGC 2 cut(s) 22, 632
TfiI GAWTC 4 cut(s) 187, 584, 916, 1013
Tru1I TTAA 5 cut(s) 72, 132, 528, 822, 927
Tru9I TTAA 5 cut(s) 72, 132, 528, 822, 927
TscAI CASTG 4 cut(s) 406, 777, 1076, 1108
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 4 cut(s) 196, 239, 242, 796
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 1008, 1128
TspRI CASTG 4 cut(s) 406, 777, 1076, 1108
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 985
XspI CTAG 5 cut(s) 207, 450, 635, 650, 714
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.