Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000256.1

Orthogroup ID

OG0000755

Physical Location & Seq

Genomic Coordinates Forward (+)

2415 .. 2870

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000256.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggataaacgattgctcgatgcaatatgtgatcatctaaagccagtgctttatataaagcgcaacttcatattccggaaaggagaccctcttgatgagatgttgttcatcacttgcggcaagttactgacttacaccaccacagacagtgcaggtgctgattgtctaaaaaaggatgacttctatggccaagaacttcttgactgggtgctaaggacttattccaatcctggcgtatccaaccttcctttctctaccaaaacagtccaagcgcatacgaatgttgaagtgtttgctctaatggccaatgacttgaaaaatgtaatgtctaagttctggtggcttctccccagctctgatttggagcaagcatgcaagccaagggcagctcaggctttgcaagcagcttggcgccgccataaataccgtcaaagactcgccgatctaaccgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

151

Amino Acids

17.4

Weight (kDa)

8.9

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000755)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31201 FvH4_7g31201 FvH4_7g31201 FvH4_7g31300 FvH4_7g31330
malus_domestica	MD01G1216700.v1.1 MD01G1216900.v1.1 MD01G1217000.v1.1 MD01G1217200.v1.1 MD01G1217400.v1.1 MD13G1117500.v1.1
prunus_persica	Prupe.2G308800_v2.0.a1
pyrus_communis	pycom01g22730 pycom01g22740 pycom01g22760
rosa_chinensis	RchiOBHm_Chr1g0380271 RchiOBHm_Chr1g0380281 RchiOBHm_Chr1g0380291 RchiOBHm_Chr1g0380351 RchiOBHm_Chr5g0056501 RchiOBHm_Chr5g0056511
rosa_laevigata	RLG00000013722 RLG00000026309 RLG00000026310 RLG00000026311 RLG00000026313
rosa_multiflora	Rmu_sc0000256.1_g000001 Rmu_sc0002387.1_g000005 Rmu_sc0002387.1_g000010 Rmu_sc0002387.1_g000012 Rmu_sc0003249.1_g000002 Rmu_sc0003249.1_g000003 Rmu_sc0003249.1_g000007 Rmu_sc0003249.1_g000008 Rmu_sc0003249.1_g000019 Rmu_sc0003249.1_g000030 Rmu_sc0005335.1_g000002 Rmu_sc0005335.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023820 Rroxscaffold_2G00077310 Rroxscaffold_4G00279460 Rroxscaffold_4G00279470 Rroxscaffold_4G00279480 Rroxscaffold_4G00279500 Rroxscaffold_4G00279520 Rroxscaffold_4G00285960 Rroxscaffold_4G00330670
rosa_rugosa	Rorug01G0419800 Rorug01G0419900 Rorug01G0420000 Rorug01G0420000 Rorug01G0420100 Rorug05G0300400 Rorug05G0300500
rosa_samantha	Rh1AG444400 Rh1AG444600 Rh1AG444700 Rh1CG413000 Rh1CG413100 Rh1CG413300 Rh1CG413400 Rh1CG413500 Rh1CG413800 Rh1CG414000 Rh1CG414300 Rh2AG468600
rosa_wichuraiana	Rw1G001780 Rw1G038590 Rw1G038670 Rw1G038690 Rw5G015040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	2 cut(s)	117, 415
AcoI	YGGCCR	2 cut(s)	187, 303
AcyI	GRCGYC	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	287, 316
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	354, 389, 407
AluI	AGCT	3 cut(s)	354, 389, 407
Alw26I	GTCTC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	2 cut(s)	187, 303
ApeKI	GCWGC	2 cut(s)	386, 404
AspLEI	GCGC	3 cut(s)	63, 274, 414
BalI	TGGCCA	2 cut(s)	189, 305
BanI	GGYRCC	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbvI	GCAGC	2 cut(s)	398, 416
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	118, 387, 405, 415
BlsI	GCNGC	4 cut(s)	119, 388, 406, 416
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	212, 390
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	44, 209
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	44, 209
BseXI	GCAGC	2 cut(s)	398, 416
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	189, 305
BshNI	GGYRCC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	189, 305
Bso31I	GGTCTC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	31, 442
BspACI	CCGC	2 cut(s)	117, 415
BspANI	GGCC	2 cut(s)	189, 305
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	44, 209
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	31, 442
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	149, 265, 428, 451
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	4 cut(s)	369, 373, 377, 402
BstDEI	CTNAG	3 cut(s)	212, 330, 390
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	3 cut(s)	63, 274, 414
BstKTI	GATC	2 cut(s)	34, 445
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	31, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 392, 401
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	398, 416
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	189, 305
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	51, 154
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	4 cut(s)	369, 373, 377, 402
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	3 cut(s)	63, 274, 414
CviAII	CATG	1 cut(s)	372
CviJI	RGCY	9 cut(s)	43, 189, 305, 343, 354, 379, 389, 395, 407
CviKI_1	RGCY	9 cut(s)	43, 189, 305, 343, 354, 379, 389, 395, 407
DdeI	CTNAG	3 cut(s)	212, 330, 390
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	2 cut(s)	33, 444
DpnII	GATC	2 cut(s)	31, 442
EaeI	YGGCCR	2 cut(s)	187, 303
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	375
FaiI	YATR	8 cut(s)	28, 54, 56, 71, 186, 276, 373, 420
FalI	AAGNNNNNCTT	6 cut(s)	50, 82, 164, 196, 183, 215
FatI	CATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	118, 387, 405, 415
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	118, 387, 405, 415
GlaI	GCGC	3 cut(s)	62, 273, 413
GluI	GCNGC	4 cut(s)	118, 387, 405, 415
GsaI	CCCAGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	189, 305
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	3 cut(s)	63, 274, 414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	375
Hin6I	GCGC	3 cut(s)	61, 272, 412
HinP1I	GCGC	3 cut(s)	61, 272, 412
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	76, 92, 200
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	4 cut(s)	149, 265, 428, 451
HpyCH4V	TGCA	4 cut(s)	23, 152, 375, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 392, 401
HpyF3I	CTNAG	3 cut(s)	212, 330, 390
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	375
HspAI	GCGC	3 cut(s)	61, 272, 412
KasI	GGCGCC	1 cut(s)	411
Kpn2I	TCCGGA	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 442
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	9 cut(s)	57, 89, 138, 190, 216, 243, 322, 364, 377
Lsp1109I	GCAGC	2 cut(s)	398, 416
LweI	GCATC	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	2 cut(s)	33, 444
MboI	GATC	2 cut(s)	31, 442
MlsI	TGGCCA	2 cut(s)	189, 305
MluNI	TGGCCA	2 cut(s)	189, 305
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	1 cut(s)	99
Mox20I	TGGCCA	2 cut(s)	189, 305
MroI	TCCGGA	1 cut(s)	75
MscI	TGGCCA	2 cut(s)	189, 305
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	2 cut(s)	189, 305
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	302, 392, 401
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	2 cut(s)	31, 442
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	375
PaqCI	CACCTGC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	119, 388, 406, 416
PleI	GAGTC	1 cut(s)	429
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	279
SatI	GCNGC	4 cut(s)	118, 387, 405, 415
Sau3AI	GATC	2 cut(s)	31, 442
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	5 cut(s)	157, 246, 356, 391, 409
SfaNI	GCATC	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	279
SphI	GCATGC	1 cut(s)	375
SsiI	CCGC	2 cut(s)	117, 415
SspDI	GGCGCC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	4 cut(s)	149, 265, 428, 451
TaqI	TCGA	1 cut(s)	18
TauI	GCSGC	2 cut(s)	120, 417
TscAI	CASTG	2 cut(s)	51, 154
TseI	GCWGC	2 cut(s)	386, 404
TspDTI	ATGAA	2 cut(s)	58, 97
TspRI	CASTG	2 cut(s)	51, 154
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.