Rh1AG444600

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000755
Physical Location & Seq
Forward (+)
66489791 .. 66490563
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG444600.1

Sequence Viewer

Length: 600 bp
ATGGCGTTTCAAATGTCAAGGATGCAGAGTGGTGATATAGAAGAAAATGGTGAAGAACTAATTCAAAAAGCTAATGGTAATCATTCAAGTGCAAGTTTAGCATCAGTGGACTCGGCTGTCGATAAGGTCTATAGAGCTATGGGGCCTGGTTTTGAAGGGCTAAAGAGCTTTAGGAAAACCATGAAAATCTATTATGGAGTTTTGTCTATAGGCTTGAGTTCCAATGATAAAATTCTTTACCGCCGGGAATTAATCCAGCACAGGTGGAATAAGATGCTTCTTGTTCTGTGTGTCATCGCTCTCTCACTGGATCCTTTGTTTTGTTATATTCTTGTGGTTAATGATGAGAAGAAGTGCCTTGGATTGGACAGAACGTTAGGAGCTATAGCTAGTGTTCTGCGATTTGTCGTGGATTTCTTTTATGTGTTTTATATCATTTATCAATTTCGTGCTAGTGTTGTCACTCTTTGTTCTCAATCATCGAAAGAAGGTGAACTGGTTCCACATACTCGGGCAAGAGCATGGACATATTTGTTGTTGTACTTCATATTCGACATTCTTGTAATTCTTCCACTTCCACAGGTATGGGTTTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

199

Amino Acids

22.67

Weight (kDa)

8.63

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AciI CCGC 1 cut(s) 241
AclI AACGTT 1 cut(s) 374
AclWI GGATC 2 cut(s) 305, 318
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 4 cut(s) 11, 65, 87, 155
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 5 cut(s) 71, 137, 168, 383, 389
AluI AGCT 5 cut(s) 71, 137, 168, 383, 389
AlwI GGATC 2 cut(s) 305, 318
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 231
AseI ATTAAT 1 cut(s) 251
Asp700I GAANNNNTTC 2 cut(s) 60, 498
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 44, 62, 503
AvaI CYCGRG 1 cut(s) 510
BamHI GGATCC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 390, 453
BfmI CTRYAG 3 cut(s) 130, 207, 384
Bme1390I CCNGG 2 cut(s) 147, 245
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 144, 312, 501
BmrFI CCNGG 2 cut(s) 147, 245
BmsI GCATC 3 cut(s) 12, 110, 264
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 312, 501
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 364
BseNI ACTGG 2 cut(s) 312, 501
BshFI GGCC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 364
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 510
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 145
BspLI GGNNCC 3 cut(s) 144, 312, 501
BspPI GGATC 2 cut(s) 305, 318
BsrI ACTGG 2 cut(s) 312, 501
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 243
BstSFI CTRYAG 3 cut(s) 130, 207, 384
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 585
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 111, 305
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 541
CviAII CATG 2 cut(s) 181, 522
CviJI RGCY 9 cut(s) 71, 116, 137, 145, 160, 168, 213, 383, 389
CviKI_1 RGCY 9 cut(s) 71, 116, 137, 145, 160, 168, 213, 383, 389
CviQI GTAC 1 cut(s) 541
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 184, 525
FatI CATG 2 cut(s) 180, 521
FokI GGATG 1 cut(s) 34
FspBI CTAG 2 cut(s) 390, 453
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 244
Hin1II CATG 2 cut(s) 184, 525
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 244
HphI GGTGA 3 cut(s) 44, 62, 503
Hpy166II GTNNAC 2 cut(s) 109, 494
Hpy8I GTNNAC 2 cut(s) 109, 494
HpyAV CCTTC 2 cut(s) 149, 482
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 25, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 2 cut(s) 184, 525
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 8 cut(s) 132, 159, 247, 257, 269, 293, 482, 566
LweI GCATC 3 cut(s) 12, 110, 264
MaeI CTAG 2 cut(s) 390, 453
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 53, 65, 361, 560
MflI RGATCY 1 cut(s) 310
MluCI AATT 5 cut(s) 60, 231, 248, 443, 564
MlyI GAGTC 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 60, 498
MseI TTAA 2 cut(s) 251, 339
MslI CAYNNNNRTG 2 cut(s) 87, 583
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 147, 245
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 310
NlaIII CATG 2 cut(s) 184, 525
NlaIV GGNNCC 3 cut(s) 144, 312, 501
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 60, 498
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 144, 312, 501
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 2 cut(s) 87, 583
SaqAI TTAA 2 cut(s) 251, 339
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 147, 245
SfaNI GCATC 3 cut(s) 12, 110, 264
SfcI CTRYAG 3 cut(s) 130, 207, 384
SmiMI CAYNNNNRTG 2 cut(s) 87, 583
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 5 cut(s) 60, 231, 248, 443, 564
SsiI CCGC 1 cut(s) 241
SspMI CTAG 2 cut(s) 390, 453
StyD4I CCNGG 2 cut(s) 145, 243
StyI CCWWGG 1 cut(s) 358
TaiI ACGT 1 cut(s) 377
TaqI TCGA 3 cut(s) 120, 482, 552
TasI AATT 5 cut(s) 60, 231, 248, 443, 564
TatI WGTACW 1 cut(s) 540
Tru1I TTAA 2 cut(s) 251, 339
Tru9I TTAA 2 cut(s) 251, 339
TscAI CASTG 2 cut(s) 111, 312
TseFI GTSAC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 2 cut(s) 197, 535
TspRI CASTG 2 cut(s) 111, 312
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 1 cut(s) 231
XmnI GAANNNNTTC 2 cut(s) 60, 498
XspI CTAG 2 cut(s) 390, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.