RchiOBHm_Chr5g0056501

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000755
Physical Location & Seq
Forward (+)
60150883 .. 60151421
539 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33340

Sequence Viewer

Length: 456 bp
ATGGCCTTCTATACACTTCCTCAGCATCTCAAGATGTGTATAAGGGAATACGAAAAAGACCAATGGCAAGAAGACATAGGAATAAACATGGACAACCTTTTGCTCAGTCTTCCCAGGGACATTAGGAGTGATACAAAGCGATATCTTTGCTTTGGGGTTATTAGTGGAGTGCCATTCTTTGAAAACTTGGATAAGCAAGTGCTGGATGCAATGTCTGATAATCTCAAGCCGGTACTTTACAAAGAAGAAAGTTATATTGTTCGGGAAGGAGAACCAATGGATGCGATGCTCTTCATAATGCGAGGCAGACTCTTGAGTGTGACTACTTATGGTGGAAGGACTGGTTTCTTCTTCAACTCGGTAAATCTCAAGGCTGGTGACTTTTGTGGTGAAGAGCTCCTCACATGGTCTCTTGATCAATCCACTCCCCTATTCTACTCTTCCAATCTCCACTAG

Protein Analysis

151

Amino Acids

17.5

Weight (kDa)

4.88

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 2 cut(s) 182, 355
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 2 cut(s) 389, 401
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 2 cut(s) 78, 101
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 4 cut(s) 34, 196, 271, 276
BpiI GAAGAC 2 cut(s) 78, 101
BplI GAGNNNNNCTC 2 cut(s) 294, 326
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 4 cut(s) 14, 209, 334, 353
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 113, 114
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 113, 114
BseGI GGATG 2 cut(s) 211, 286
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 35, 118
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 389
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 415
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 34, 117
BspQI GCTCTTC 2 cut(s) 296, 387
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 113, 114
BssMI GATC 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 296, 387, 445
BstDEI CTNAG 2 cut(s) 21, 104
BstF5I GGATG 2 cut(s) 211, 286
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstV2I GAAGAC 2 cut(s) 78, 101
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 211, 286
Cfr10I RCCGGY 1 cut(s) 229
Csp6I GTAC 1 cut(s) 233
CviAII CATG 2 cut(s) 88, 405
CviJI RGCY 4 cut(s) 5, 229, 374, 397
CviKI_1 RGCY 4 cut(s) 5, 229, 374, 397
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 2 cut(s) 21, 104
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 3 cut(s) 296, 387, 445
EarI CTCTTC 3 cut(s) 296, 387, 445
Ecl136II GAGCTC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 113
EcoRV GATATC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 2 cut(s) 91, 408
FaiI YATR 8 cut(s) 12, 41, 77, 89, 255, 296, 330, 406
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 87, 404
FbaI TGATCA 1 cut(s) 415
FokI GGATG 2 cut(s) 218, 293
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 1 cut(s) 454
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 230
Hin1II CATG 2 cut(s) 91, 408
HinfI GANTC 1 cut(s) 309
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 389, 401
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 4 cut(s) 31, 263, 313, 413
HpyAV CCTTC 3 cut(s) 16, 260, 330
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 21, 104
Hsp92II CATG 2 cut(s) 91, 408
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 2 cut(s) 296, 387
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 6 cut(s) 100, 127, 188, 243, 327, 360
LweI GCATC 4 cut(s) 34, 196, 271, 276
MaeI CTAG 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 319, 377
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 8 cut(s) 83, 101, 257, 283, 340, 343, 404, 432
MhlI GDGCHC 1 cut(s) 399
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 3 cut(s) 30, 296, 410
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 91, 408
NmuCI GTSAC 2 cut(s) 319, 377
PasI CCCWGGG 1 cut(s) 114
PciSI GCTCTTC 2 cut(s) 296, 387
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 2 cut(s) 296, 387
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 399
SetI ASST 2 cut(s) 99, 399
SfaNI GCATC 4 cut(s) 34, 196, 271, 276
SmlI CTYRAG 4 cut(s) 29, 224, 313, 368
SmoI CTYRAG 4 cut(s) 29, 224, 313, 368
SspMI CTAG 1 cut(s) 454
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 113
TseFI GTSAC 2 cut(s) 319, 377
Tsp45I GTSAC 2 cut(s) 319, 377
TspDTI ATGAA 1 cut(s) 283
XspI CTAG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.