Prupe.3G188700_v2.0.a1

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000097
Physical Location & Seq
Forward (+)
20204013 .. 20204702
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G188700.1

Sequence Viewer

Length: 690 bp
ATGCCGGTTCCACCTCTTTATACCATTGGTCCTATCCAATTACTTCTCAATCAGATACCAGAAGATTCTTTGAGCCCTATCGGATACAGTTTATGGAAAGAAGAAACTGAGTGCCGTCAATGGCTAAATTCCAAGCGCCCAAATTCAGTTGTTTATGTGAATTTTGGCAGTGTAGCGGTCATGACACCGCAACACCTTGTGGAGTTTGGCTGGGGACTTGCAAATAGCAAGTTTCAATTCTTTTGGGTAATTAGGCCCGATTTGGTTGTTGGTGAATCTGCATATTTGCCACCTGAGTTTGTGGCGGAAACGAAGGAAAGAGGTCTAATAGCAAGTTGGTGCCCACAAGAAGAAGTCCTTAACCATCCATCAGTTGGAGGGTTTTTAACACACAGCGGTTGGAATTCAACCATGGAGAGTCTGACTGCAGGAGAGCCAACGATCTGCTGGCCATTCTTTGCTGACCAGAGAACCAATTGTTATTATACTTGCATGGAGATTGGTAACGATGTCAAGAGAGATGAAGTGGAGATGCTTGTTAGAGAGTTGATGGAGGGAGAGAAGGGTAAGAAAATGAAAAAGAAGGCTAAGGAGTGGAAGAAACTAGCAGAAAATGCAACTGATCCACATGGCTCCTCACCCATTAACTTAGATAATTTAGTCGATCAAGTGCTGTTAAGAAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

230

Amino Acids

26.03

Weight (kDa)

5.34

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 4 cut(s) 176, 188, 305, 396
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 449
AcsI RAATTY 4 cut(s) 127, 142, 160, 403
AdeI CACNNNGTG 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 236, 408
AlwI GGATC 1 cut(s) 617
AoxI GGCC 2 cut(s) 254, 449
ApoI RAATTY 4 cut(s) 127, 142, 160, 403
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 29, 255
AsuHPI GGTGA 2 cut(s) 284, 630
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 344
BalI TGGCCA 1 cut(s) 451
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 77
BccI CCATC 3 cut(s) 372, 376, 544
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 77
BfaI CTAG 2 cut(s) 605, 688
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 139
BfuI GTATCC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 29, 255
BmiI GGNNCC 3 cut(s) 9, 341, 634
BmsI GCATC 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 4
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 99, 285
BseRI GAGGAG 1 cut(s) 625
BseSI GKGCMC 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 256, 451
BshNI GGYRCC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 2 cut(s) 256, 451
Bsp1286I GDGCHC 2 cut(s) 77, 344
Bsp143I GATC 3 cut(s) 441, 622, 664
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 4 cut(s) 176, 188, 305, 396
BspANI GGCC 2 cut(s) 256, 451
BspCNI CTCAG 2 cut(s) 100, 286
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 3 cut(s) 9, 341, 634
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 441, 622, 664
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 4 cut(s) 108, 294, 588, 649
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 3 cut(s) 444, 625, 667
BstMBI GATC 3 cut(s) 441, 622, 664
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 344
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 256, 451
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 449
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 29, 255
CviAII CATG 4 cut(s) 181, 412, 493, 629
CviJI RGCY 8 cut(s) 75, 124, 210, 256, 436, 451, 587, 633
CviKI_1 RGCY 8 cut(s) 75, 124, 210, 256, 436, 451, 587, 633
DdeI CTNAG 4 cut(s) 108, 294, 588, 649
DpnI GATC 3 cut(s) 443, 624, 666
DpnII GATC 3 cut(s) 441, 622, 664
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 449
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 184, 415, 496, 632
FaiI YATR 9 cut(s) 21, 94, 156, 182, 283, 413, 486, 494, 630
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 228
FatI CATG 4 cut(s) 180, 411, 492, 628
FokI GGATG 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 77
FspBI CTAG 2 cut(s) 605, 688
GlaI GCGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 2 cut(s) 256, 451
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 138
Hin1II CATG 4 cut(s) 184, 415, 496, 632
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 3 cut(s) 65, 275, 418
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 284, 630
Hpy188I TCNGA 3 cut(s) 54, 83, 423
Hpy188III TCNNGA 2 cut(s) 181, 514
HpyAV CCTTC 3 cut(s) 307, 556, 577
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 5 cut(s) 221, 281, 428, 492, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 4 cut(s) 108, 294, 588, 649
Hsp92II CATG 4 cut(s) 184, 415, 496, 632
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 441, 622, 664
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 7 cut(s) 18, 72, 196, 306, 414, 433, 479
LweI GCATC 1 cut(s) 522
MaeI CTAG 2 cut(s) 605, 688
MaeIII GTNAC 1 cut(s) 503
MalI GATC 3 cut(s) 443, 624, 666
MboI GATC 3 cut(s) 441, 622, 664
MboII GAAGA 4 cut(s) 74, 113, 362, 610
MfeI CAATTG 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 77, 344
MlsI TGGCCA 1 cut(s) 451
MluCI AATT 9 cut(s) 38, 127, 142, 160, 236, 249, 403, 475, 655
MluNI TGGCCA 1 cut(s) 451
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 355, 380
MnlI CCTC 5 cut(s) 24, 314, 371, 547, 646
Mox20I TGGCCA 1 cut(s) 451
MscI TGGCCA 1 cut(s) 451
MseI TTAA 4 cut(s) 360, 386, 645, 677
Msp20I TGGCCA 1 cut(s) 451
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 5
MunI CAATTG 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 614
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 441, 622, 664
NlaIII CATG 4 cut(s) 184, 415, 496, 632
NlaIV GGNNCC 3 cut(s) 9, 341, 634
PagI TCATGA 1 cut(s) 180
PfeI GAWTC 2 cut(s) 65, 275
PflMI CCANNNNNTGG 1 cut(s) 374
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 9, 341, 634
PspPI GGNCC 2 cut(s) 29, 255
PstI CTGCAG 1 cut(s) 430
SaqAI TTAA 4 cut(s) 360, 386, 645, 677
Sau3AI GATC 3 cut(s) 441, 622, 664
Sau96I GGNCC 2 cut(s) 29, 255
SchI GAGTC 1 cut(s) 427
SduI GDGCHC 2 cut(s) 77, 344
SetI ASST 4 cut(s) 16, 198, 295, 325
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 29
Sse9I AATT 9 cut(s) 38, 127, 142, 160, 236, 249, 403, 475, 655
SsiI CCGC 4 cut(s) 176, 188, 305, 396
SspMI CTAG 2 cut(s) 605, 688
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 663
TasI AATT 9 cut(s) 38, 127, 142, 160, 236, 249, 403, 475, 655
TfiI GAWTC 2 cut(s) 65, 275
Tru1I TTAA 4 cut(s) 360, 386, 645, 677
Tru9I TTAA 4 cut(s) 360, 386, 645, 677
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 537, 590
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 4 cut(s) 127, 142, 160, 403
XcmI CCANNNNNNNNNTGG 2 cut(s) 371, 444
XspI CTAG 2 cut(s) 605, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.