Rroxscaffold_2G00094520

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000097
Physical Location & Seq
Reverse (-)
15888145 .. 15888557
413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094520.1

Sequence Viewer

Length: 363 bp
ATGTCTCCACAACATCTTGTAGAGTTTGGTTGGGGACTTGCAAATATCCGCAATTTGCCACCGGAGTTTGTAGCTGAAACCAAGGAAAGAGGTCTAATCGCAAGTTGGTGTCCGCAAGAGCAAGTACTTAACCACCCATCAGTTGGAGGGTTTTTGACACACAGCGGTTGGAATTCGACTGTTGAGAGTTTGTGTGCAGGTGTGCCTATGCTATGTTGGCCATTCTTTTCTGACCAGCTAACAAATTGTTGGTATGCTTGTAATGAATGGGGCATTGGCATGGAGATTAGTAATGATGTAAAGAGAGGCGAAGTTGAGAAGCTTGTGAGAGAGTTAATGGGGGAGAGAAGGGTGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

120

Amino Acids

13.64

Weight (kDa)

5.58

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 18 - 112 2.1e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 143
AciI CCGC 3 cut(s) 49, 113, 165
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 3 cut(s) 74, 238, 322
AluI AGCT 3 cut(s) 74, 238, 322
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 172
BalI TGGCCA 1 cut(s) 220
BccI CCATC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 188
BmcAI AGTACT 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 220
BspACI CCGC 3 cut(s) 49, 113, 165
BspANI GGCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 220
BveI ACCTGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 125
CviAII CATG 1 cut(s) 280
CviJI RGCY 4 cut(s) 74, 220, 238, 322
CviKI_1 RGCY 4 cut(s) 74, 220, 238, 322
CviQI GTAC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 283
FaiI YATR 4 cut(s) 209, 214, 255, 281
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 320
HpaII CCGG 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 41, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 283
LpnPI CCDG 3 cut(s) 75, 183, 248
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 3 cut(s) 52, 172, 244
MluNI TGGCCA 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 124, 149
MnlI CCTC 3 cut(s) 83, 140, 299
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
MseI TTAA 2 cut(s) 129, 335
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 143
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 129, 335
ScaI AGTACT 1 cut(s) 126
SetI ASST 5 cut(s) 76, 94, 202, 240, 324
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 3 cut(s) 52, 172, 244
SsiI CCGC 3 cut(s) 49, 113, 165
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 176
TasI AATT 3 cut(s) 52, 172, 244
TatI WGTACW 1 cut(s) 124
Tru1I TTAA 2 cut(s) 129, 335
Tru9I TTAA 2 cut(s) 129, 335
TspDTI ATGAA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.