Rroxscaffold_2G00094410

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000097
Physical Location & Seq
Reverse (-)
15689784 .. 15695946
6163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094410.1

Sequence Viewer

Length: 3330 bp
ATGAGTTCCATGGCAGTAATCAATAAGCCTCATGCTGTATGCATTCCTTTGCCATTTCAGAGCCATATAAAGGCAATGCTTCAGTTAGCTCAACTCATCCACCACAGAGGTTTTCATACAACCTTTGTCAACACACAGTTCAACCACAAGCGCTTTCGTAAGTCTCTTGGACCCAACTCTCTAGATTGCTTGCCTGATTTTCGGTTTGAGACTATTCCGGATGGTCTTCCAAGTTCAGATGAAGATGACGCCCAAGACCTCACTTTGCTTTGTGAGGCCGTCAGAACACATTGCTTGGCTCCGTTTCGTAACCTCCTCATCAAACTGAATGGTGACAAGAGTCTTCCTGTAGTGACTTGCATTGTCTCGGATGGTTTCCTCCCATTCACTATCACAGTTGCTGAAGAGCTTGGAATTCCTATAGCACAGTTCTTTACTTTGGCGGCAGTTGGATTCATGAACTTTAAAGTATTTCCCACTTTGGTTGAAAAAGGATTTGCACCCCTCAAAGATGAGAGTTGTATGACAAATGATTTTTTGGACACGGTAATAGATTGGGTTCCGGGACTGAAGGATATCCGTTTAAAGGATCTCTCAGGCTCCTGGAAAACTACAAACCCCGATGACTTCAAGCTTAACTTCACCTTAGAAGCAGTGGAGGGAGCTCATAAAGCTTCAGCAGTTATTGTTCATAGTTTTGAGGCGTTGGAGCTGGATGTTTTGGAAGCTCTATCCAGTACTACATCTATGCTTCCACCTGTTTACGCCATTGGCCCTCTCCAATTACTTCTCAATCAGATACCGGAACATCCTTTGAAGTCTGTGGGATACAGTTTACGGAAAGAAGAAACTGAGTGCCTCCAATGGCTTAATGGTAAGATACCAAACTCAGTTGTGTACGTGAACTTTGGGAGTGTAGTGGTCATGACACCTCAACATCTCATTGAGTTTGCTTGGGGACTTGCAAATAGCAAGCTTTCATTTTTGTGGGTTATTAGACCTGATTTGGTTGCTGGTGAATCTGCGATTTTACCACCCGAGTTTGTGGCTGAAACAAAGGAAAGAGGTCTTATAGCAAGTTGGTGCCCACAAGAGAAAGTTCTTAACCATCCATCAGTAGGAGCATTTTTAACACATAGCGGTTGGAATTCAACTATGGAGAGTATTTCCGCAGGAGTGCCTATGCTCTGTTGGCCGTTACTTGGTGACCAGCGGATCAACTGTCGCTATACTTGCTATGAGTGGGGTATTGGCATGGAGATCAGTAATGATGTGAAAAGAGATGAAGTAAAGAAACTTGTTGAAGAGTTAATGGTTGGAGAGAAGGGTAAGGAAATGAAAACTAAGGTCATGGAGTGGAAGAAACTAGCAGAAGAGGCCGCTGGTCCACTGGGTTCTTCGCTTATAACCTTGGACAATTTAGTATATCAAGTGCTACTGATTTCTTTAGCTTTGTTTTTTGATTTTGTTCAAAGGATGGGATATGGCAGGACAATGAACAGAAACTGGGAAGACCTTGTGGTTTCGTCATCAACTGAAGCGCTGGTATTTGATAAAGGTTTTTCAAGTGGTCAAATGAGCATACTGTGCAAGACAATGCTCAAGTTGAATTTGGAAGCAGTGATCGAGCTTCTTCAACAAGCACTTGCTGTTAGTGCGGCAAGCTCAGGAGCGATGTGTGAGGGAGCGATGATAATGGGGCGGCAGAGGATCAACGATGATTTTGCTGACCTGGCGGATGATGACGACGACGGCAACAACGATGAGTTTCTGCCGCCGGATGAGTGGTGGCCGTGGCGAGAGGGTCTGGGCTTAATTGGGGAGGACAGTCAAAGGCGCTTTCTTAAATCTCTTGGACCCAACTCTCTTGATCACTTTCCTGATTTTCGGTTTGAAACTATTCCAGATGGCCTTCCGAGTTCAGATGAAAAGGACTCCCAAGACACCACTTTGGTCTTTAAATCTGTCAGAAAACATTTCTTGGCTCCGTTCCGTAACCTCCTCAACAAACTGAATGGCAATATAAATCTTCCGGTGACTAGCATTGTCTCAGATGGCTTCCTGACGTTCAGCATCACAGTTGCCGAAGAACTAGGGATTCCTATAGTGCAGTTCTTTACTTTGGCGGCAGTTGGATTCATGAACTTCAAATTATTTCCCACTTTAGTGGAAAAAGGATTTGCACCCCTTAAAGATGAGAGCTGTATGACAAATGATTTTTTGGACACGGTTATAGATTGGGTTCCGGGACTTAAGGATATCCGTTTAAGGGATCTCTCAGGCTCCTGGAGAACTACAAACCCCAATGACTTCAAGTTTAACTTTGCCTTAGAAGCAGTGGAGGGAGCTCATAAAGCTTCGGCAGTTATTGTTCATACTTTTGAGGCGTTGGAGCGAGATGTTTTGGAAGCCCTATCCAGTACTACATCTATGCTTCCACCTGTTTACGCCATTGGCCCTCTCCAATTACTTCTCAATCAGATACCGGAACACCCTTTGAAGTCTTTGGGATACAGTTTACGGAAAGAAGAAACTGAGTGTCTCCAATGGCTAAATGGTAAGGCACCAAACTCAGTTGTGTATGTGAACTTTGGTAGTGTAGTGGTCGTGACATCTCAACATCTCATTGAGTTTGCTTGGGGACTTGCAAATAGCAAGCTTTCATTCTTGTGGGTTATTAGACCTGATTTGGTTGCTGGTGAATCTGCGATTTTACCAACCGAGTTTGTGGCTGAAACAAAGGAAAGAGGTCTTATAGCAAGTTGGTGCCCACAAGAGAAAGTTCTTAACCATCCATCAGTCAGCGCATTTTTAACACATAGCGGTTGGAATTCAACTATGGAGAGTATTTCCGCAGGAGTGCCTATGCTCTGTTGGCCATTAGTTGCTGACCAGCGGATTAACTGTCGTTATACTTGTTATGAGTGGGATATTGGCATGGAGATCAGTAATGATGTGAAGAGAGACGAAGTACAGAAACTCATTGAAGAGTTAATGGTAGGAGAGAAGGGTAAGGAAATGAAAAATAAGGTCATGGAGTGGAAGAGACTAGCAAAAGAGGCCGCTGGTCCACTTGGTTCTTCGCTCATAACCTTAGACAAATTAGTGTATCAAGTGCTACTAAGCAAAGTTTCTTTGGCTTTGTTTTTTGATTTTGTTCAAAGGATGGCATACGGCTTTGGCAGGACAATGAACAAACTGCTGCTGCTGGCCGGTGTTCAATGTGGTGGTGCCAAGGTGACCTATGGTTCAAGTGAGACAAACGTCGAAGCCAGCTCTGGTGTAAGACGTGGTTCTTGCTTCTTTAGGTCAGTTCCTTCGAAAGAATGA

Protein Analysis

1109

Amino Acids

123.42

Weight (kDa)

5.22

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 294 - 445 8.3e-27 UDP-glucoronosyl and UDP-glucosyl transferase
UDPGT PF00201 845 - 1019 2.9e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1406
AccB1I GGYRCC 4 cut(s) 1083, 2563, 2766, 3230
AccIII TCCGGA 1 cut(s) 217
AclWI GGATC 4 cut(s) 597, 1223, 1718, 2280
AcoI YGGCCR 4 cut(s) 1193, 1790, 2876, 3210
AcsI RAATTY 4 cut(s) 414, 1147, 1609, 2830
AcuI CTGAAG 5 cut(s) 65, 423, 590, 660, 1557
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 4 cut(s) 739, 899, 2422, 2973
AfeI AGCGCT 2 cut(s) 152, 1542
AfiI CCNNNNNNNGG 5 cut(s) 70, 586, 1118, 1202, 2269
AflII CTTAAG 1 cut(s) 2252
AjiI CACGTC 1 cut(s) 3290
AjnI CCWGG 3 cut(s) 602, 1731, 2285
AleI CACNNNNGTG 1 cut(s) 2165
Alw21I GWGCWC 2 cut(s) 667, 2350
Alw26I GTCTC 8 cut(s) 168, 203, 370, 2053, 2546, 2958, 3040, 3251
AlwI GGATC 4 cut(s) 597, 1223, 1718, 2280
AlwNI CAGNNNCTG 2 cut(s) 401, 1506
Ama87I CYCGRG 1 cut(s) 1037
Aor13HI TCCGGA 1 cut(s) 217
Aor51HI AGCGCT 2 cut(s) 152, 1542
ApeKI GCWGC 2 cut(s) 3202, 3205
ApoI RAATTY 4 cut(s) 414, 1147, 1609, 2830
Asp700I GAANNNNTTC 1 cut(s) 1899
AspLEI GCGC 4 cut(s) 153, 1543, 1839, 2807
AspS9I GGNCC 6 cut(s) 170, 773, 1385, 1856, 2456, 3068
AsuC2I CCSGG 2 cut(s) 564, 2247
AsuHPI GGTGA 7 cut(s) 344, 634, 1028, 1217, 2047, 2711, 3250
AsuII TTCGAA 1 cut(s) 3320
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 4 cut(s) 170, 1385, 1856, 3068
BaeGI GKGCMC 2 cut(s) 1088, 2771
BalI TGGCCA 1 cut(s) 2878
BanI GGYRCC 4 cut(s) 1083, 2563, 2766, 3230
BanII GRGCYC 2 cut(s) 667, 2350
BbsI GAAGAC 3 cut(s) 218, 335, 1518
Bbv12I GWGCWC 2 cut(s) 667, 2350
BbvI GCAGC 2 cut(s) 3189, 3192
BceAI ACGGC 5 cut(s) 263, 1180, 1768, 1777, 3190
BcgI CGANNNNNNTGC 2 cut(s) 1706, 1740
BciT130I CCWGG 3 cut(s) 604, 1733, 2287
BciVI GTATCC 2 cut(s) 821, 2504
BclI TGATCA 1 cut(s) 1870
BcnI CCSGG 2 cut(s) 564, 2247
BcoDI GTCTC 8 cut(s) 168, 203, 370, 2053, 2546, 2958, 3040, 3251
BfaI CTAG 5 cut(s) 182, 1367, 2040, 2093, 3050
BfmI CTRYAG 3 cut(s) 348, 420, 2103
BfoI RGCGCY 3 cut(s) 154, 1544, 1840
BfrI CTTAAG 1 cut(s) 2252
BfuI GTATCC 2 cut(s) 821, 2504
BisI GCNGC 9 cut(s) 444, 1380, 1659, 1703, 1775, 2127, 3063, 3203, 3206
BlsI GCNGC 9 cut(s) 445, 1381, 1660, 1704, 1776, 2128, 3064, 3204, 3207
BmcAI AGTACT 2 cut(s) 739, 2422
Bme1390I CCNGG 5 cut(s) 564, 604, 1733, 2247, 2287
Bme18I GGWCC 4 cut(s) 170, 1385, 1856, 3068
BmeT110I CYCGRG 1 cut(s) 1037
BmgBI CACGTC 1 cut(s) 3290
BmgT120I GGNCC 6 cut(s) 170, 773, 1385, 1856, 2456, 3068
BmrFI CCNGG 5 cut(s) 564, 604, 1733, 2247, 2287
BmrI ACTGGG 2 cut(s) 1400, 1516
BmsI GCATC 1 cut(s) 2082
BmuI ACTGGG 2 cut(s) 1400, 1516
BoxI GACNNNNGTC 2 cut(s) 339, 3263
BpiI GAAGAC 3 cut(s) 218, 335, 1518
BpmI CTGGAG 1 cut(s) 2308
Bpu10I CCTNAGC 1 cut(s) 1666
Bpu14I TTCGAA 1 cut(s) 3320
BpuEI CTTGAG 1 cut(s) 1586
BpuMI CCSGG 2 cut(s) 564, 2247
BsaAI YACGTR 1 cut(s) 901
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 9, 1410, 1793, 3234
BsaWI WCCGGW 4 cut(s) 217, 802, 2032, 2485
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 586, 1118, 1202, 2269
Bse118I RCCGGY 1 cut(s) 3212
Bse1I ACTGG 4 cut(s) 735, 1395, 1511, 2418
Bse3DI GCAATG 2 cut(s) 81, 289
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 3 cut(s) 604, 1733, 2287
BseDI CCNNGG 4 cut(s) 9, 1410, 1793, 3234
BseLI CCNNNNNNNGG 5 cut(s) 70, 586, 1118, 1202, 2269
BseMI GCAATG 2 cut(s) 81, 289
BseMII CTCAG 8 cut(s) 609, 843, 903, 1680, 2064, 2292, 2526, 2586
BseNI ACTGG 4 cut(s) 735, 1395, 1511, 2418
BseRI GAGGAG 2 cut(s) 305, 1991
BseSI GKGCMC 2 cut(s) 1088, 2771
BseXI GCAGC 2 cut(s) 3189, 3192
BsgI GTGCAG 1 cut(s) 2129
BshNI GGYRCC 4 cut(s) 1083, 2563, 2766, 3230
BsiHKAI GWGCWC 2 cut(s) 667, 2350
BsiHKCI CYCGRG 1 cut(s) 1037
BsiSI CCGG 8 cut(s) 218, 563, 803, 1778, 2033, 2246, 2486, 3213
BslFI GGGAC 4 cut(s) 579, 972, 2262, 2655
BslI CCNNNNNNNGG 5 cut(s) 70, 586, 1118, 1202, 2269
BsmAI GTCTC 8 cut(s) 168, 203, 370, 2053, 2546, 2958, 3040, 3251
BsmBI CGTCTC 1 cut(s) 2958
BsmFI GGGAC 4 cut(s) 579, 972, 2262, 2655
BsmI GAATGC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 1037
Bsp119I TTCGAA 1 cut(s) 3320
Bsp1286I GDGCHC 4 cut(s) 667, 1088, 2350, 2771
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
Bsp19I CCATGG 1 cut(s) 9
BspCNI CTCAG 8 cut(s) 608, 844, 902, 1679, 2063, 2291, 2527, 2585
BspEI TCCGGA 1 cut(s) 217
BspHI TCATGA 3 cut(s) 456, 924, 2139
BspPI GGATC 4 cut(s) 597, 1223, 1718, 2280
BspQI GCTCTTC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 3320
BspT107I GGYRCC 4 cut(s) 1083, 2563, 2766, 3230
BspTI CTTAAG 1 cut(s) 2252
BsrDI GCAATG 2 cut(s) 81, 289
BsrFI RCCGGY 1 cut(s) 3212
BsrI ACTGG 4 cut(s) 735, 1395, 1511, 2418
BssAI RCCGGY 1 cut(s) 3212
BssECI CCNNGG 4 cut(s) 9, 1410, 1793, 3234
BssMI GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 3 cut(s) 9, 1410, 3234
Bst2UI CCWGG 3 cut(s) 604, 1733, 2287
Bst6I CTCTTC 6 cut(s) 399, 1299, 1368, 2954, 2982, 3038
BstACI GRCGYC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 2252
BstAPI GCANNNNNTGC 1 cut(s) 1587
BstBAI YACGTR 1 cut(s) 901
BstBI TTCGAA 1 cut(s) 3320
BstC8I GCNNGC 6 cut(s) 191, 974, 1663, 2657, 3210, 3274
BstDSI CCRYGG 2 cut(s) 9, 1793
BstEII GGTNACC 2 cut(s) 1205, 3238
BstH2I RGCGCY 3 cut(s) 154, 1544, 1840
BstHHI GCGC 4 cut(s) 153, 1543, 1839, 2807
BstKTI GATC 8 cut(s) 592, 1218, 1263, 1626, 1713, 1873, 2275, 2946
BstMAI GTCTC 8 cut(s) 168, 203, 370, 2053, 2546, 2958, 3040, 3251
BstMBI GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
BstNI CCWGG 3 cut(s) 604, 1733, 2287
BstPAI GACNNNNGTC 2 cut(s) 339, 3263
BstPI GGTNACC 2 cut(s) 1205, 3238
BstSCI CCNGG 5 cut(s) 562, 602, 1731, 2245, 2285
BstSFI CTRYAG 3 cut(s) 348, 420, 2103
BstSLI GKGCMC 2 cut(s) 1088, 2771
BstV1I GCAGC 2 cut(s) 3189, 3192
BstV2I GAAGAC 3 cut(s) 218, 335, 1518
BstX2I RGATCY 2 cut(s) 589, 2272
BstXI CCANNNNNNTGG 1 cut(s) 2167
BstYI RGATCY 2 cut(s) 589, 2272
BsuI GTATCC 2 cut(s) 821, 2504
BtgI CCRYGG 2 cut(s) 9, 1793
BtgZI GCGATG 2 cut(s) 1688, 1703
BtrI CACGTC 1 cut(s) 3290
BtsI GCAGTG 3 cut(s) 660, 1626, 2343
BtsIMutI CAGTG 4 cut(s) 660, 1388, 1626, 2343
Cac8I GCNNGC 6 cut(s) 191, 974, 1663, 2657, 3210, 3274
CaiI CAGNNNCTG 2 cut(s) 401, 1506
CciI TCATGA 3 cut(s) 456, 924, 2139
CfoI GCGC 4 cut(s) 153, 1543, 1839, 2807
Cfr10I RCCGGY 1 cut(s) 3212
Cfr13I GGNCC 6 cut(s) 170, 773, 1385, 1856, 2456, 3068
CseI GACGC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 738, 898, 2421, 2972
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 9 cut(s) 10, 32, 457, 925, 1255, 1351, 2140, 2938, 3034
CviQI GTAC 4 cut(s) 738, 898, 2421, 2972
DpnI GATC 8 cut(s) 591, 1217, 1262, 1625, 1712, 1872, 2274, 2945
DpnII GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
DraI TTTAAA 3 cut(s) 466, 585, 1960
EaeI YGGCCR 4 cut(s) 1193, 1790, 2876, 3210
Eam1104I CTCTTC 6 cut(s) 399, 1299, 1368, 2954, 2982, 3038
EarI CTCTTC 6 cut(s) 399, 1299, 1368, 2954, 2982, 3038
EciI GGCGGA 1 cut(s) 1751
Ecl136II GAGCTC 2 cut(s) 665, 2348
Eco130I CCWWGG 3 cut(s) 9, 1410, 3234
Eco24I GRGCYC 2 cut(s) 667, 2350
Eco32I GATATC 2 cut(s) 577, 2260
Eco47I GGWCC 4 cut(s) 170, 1385, 1856, 3068
Eco47III AGCGCT 2 cut(s) 152, 1542
Eco53kI GAGCTC 2 cut(s) 665, 2348
Eco57I CTGAAG 5 cut(s) 65, 423, 590, 660, 1557
Eco88I CYCGRG 1 cut(s) 1037
Eco91I GGTNACC 2 cut(s) 1205, 3238
EcoICRI GAGCTC 2 cut(s) 665, 2348
EcoO65I GGTNACC 2 cut(s) 1205, 3238
EcoRI GAATTC 3 cut(s) 414, 1147, 2830
EcoRII CCWGG 3 cut(s) 602, 1731, 2285
EcoRV GATATC 2 cut(s) 577, 2260
EcoT14I CCWWGG 3 cut(s) 9, 1410, 3234
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 2 cut(s) 667, 2350
ErhI CCWWGG 3 cut(s) 9, 1410, 3234
Esp3I CGTCTC 1 cut(s) 2958
FaeI CATG 9 cut(s) 13, 35, 460, 928, 1258, 1354, 2143, 2941, 3037
FalI AAGNNNNNCTT 4 cut(s) 623, 655, 2306, 2338
FaqI GGGAC 4 cut(s) 579, 972, 2262, 2655
FatI CATG 9 cut(s) 9, 31, 456, 924, 1254, 1350, 2139, 2937, 3033
FbaI TGATCA 1 cut(s) 1870
Fnu4HI GCNGC 9 cut(s) 444, 1380, 1659, 1703, 1775, 2127, 3063, 3203, 3206
FriOI GRGCYC 2 cut(s) 667, 2350
Fsp4HI GCNGC 9 cut(s) 444, 1380, 1659, 1703, 1775, 2127, 3063, 3203, 3206
FspBI CTAG 5 cut(s) 182, 1367, 2040, 2093, 3050
GlaI GCGC 4 cut(s) 152, 1542, 1838, 2806
GluI GCNGC 9 cut(s) 444, 1380, 1659, 1703, 1775, 2127, 3063, 3203, 3206
GsuI CTGGAG 1 cut(s) 2308
HaeII RGCGCY 3 cut(s) 154, 1544, 1840
HapII CCGG 8 cut(s) 218, 563, 803, 1778, 2033, 2246, 2486, 3213
HgaI GACGC 1 cut(s) 257
HhaI GCGC 4 cut(s) 153, 1543, 1839, 2807
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 9 cut(s) 13, 35, 460, 928, 1258, 1354, 2143, 2941, 3037
Hin6I GCGC 4 cut(s) 151, 1541, 1837, 2805
HinP1I GCGC 4 cut(s) 151, 1541, 1837, 2805
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 5 cut(s) 632, 672, 974, 2355, 2657
HinfI GANTC 7 cut(s) 340, 453, 1019, 1934, 2098, 2136, 2702
HpaII CCGG 8 cut(s) 218, 563, 803, 1778, 2033, 2246, 2486, 3213
HphI GGTGA 7 cut(s) 344, 634, 1028, 1217, 2047, 2711, 3250
Hpy99I CGWCG 3 cut(s) 1751, 1754, 3269
HpyAV CCTTC 5 cut(s) 565, 1318, 1922, 3001, 3327
HpyCH4IV ACGT 4 cut(s) 900, 2066, 3264, 3289
HpyCH4V TGCA 8 cut(s) 42, 360, 500, 965, 1590, 2110, 2183, 2648
HpySE526I ACGT 4 cut(s) 900, 2066, 3264, 3289
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 9 cut(s) 13, 35, 460, 928, 1258, 1354, 2143, 2941, 3037
HspAI GCGC 4 cut(s) 151, 1541, 1837, 2805
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 1870
Kzo9I GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
LguI GCTCTTC 1 cut(s) 399
Lsp1109I GCAGC 2 cut(s) 3189, 3192
LweI GCATC 1 cut(s) 2082
MaeI CTAG 5 cut(s) 182, 1367, 2040, 2093, 3050
MaeII ACGT 4 cut(s) 900, 2066, 3264, 3289
MaeIII GTNAC 9 cut(s) 308, 332, 352, 1197, 1205, 1994, 2035, 2608, 3238
MalI GATC 8 cut(s) 591, 1217, 1262, 1625, 1712, 1872, 2274, 2945
MboI GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
MflI RGATCY 2 cut(s) 589, 2272
MhlI GDGCHC 4 cut(s) 667, 1088, 2350, 2771
MlsI TGGCCA 1 cut(s) 2878
MluNI TGGCCA 1 cut(s) 2878
MlyI GAGTC 2 cut(s) 349, 1928
MmeI TCCRAC 7 cut(s) 430, 687, 1124, 1297, 2113, 2370, 2807
Mox20I TGGCCA 1 cut(s) 2878
Mph1103I ATGCAT 1 cut(s) 44
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 1899
MscI TGGCCA 1 cut(s) 2878
MslI CAYNNNNRTG 3 cut(s) 985, 2165, 2668
Msp20I TGGCCA 1 cut(s) 2878
MspA1I CMGCKG 4 cut(s) 1213, 1382, 2896, 3065
MspCI CTTAAG 1 cut(s) 2252
MspI CCGG 8 cut(s) 218, 563, 803, 1778, 2033, 2246, 2486, 3213
MspR9I CCNGG 5 cut(s) 564, 604, 1733, 2247, 2287
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 3 cut(s) 604, 1733, 2287
NciI CCSGG 2 cut(s) 564, 2247
NcoI CCATGG 1 cut(s) 9
NdeII GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
NlaIII CATG 9 cut(s) 13, 35, 460, 928, 1258, 1354, 2143, 2941, 3037
NmuCI GTSAC 6 cut(s) 332, 352, 1205, 2035, 2608, 3238
NsiI ATGCAT 1 cut(s) 44
NspV TTCGAA 1 cut(s) 3320
OliI CACNNNNGTG 1 cut(s) 2165
PagI TCATGA 3 cut(s) 456, 924, 2139
PciSI GCTCTTC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 1758
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 1899
PfeI GAWTC 5 cut(s) 453, 1019, 2098, 2136, 2702
PfoI TCCNGGA 4 cut(s) 562, 602, 2245, 2285
PkrI GCNGC 9 cut(s) 445, 1381, 1660, 1704, 1776, 2128, 3064, 3204, 3207
PleI GAGTC 2 cut(s) 348, 1928
PpsI GAGTC 2 cut(s) 348, 1928
Ppu21I YACGTR 1 cut(s) 901
PshAI GACNNNNGTC 2 cut(s) 339, 3263
PsiI TTATAA 1 cut(s) 1406
Psp124BI GAGCTC 2 cut(s) 667, 2350
Psp6I CCWGG 3 cut(s) 602, 1731, 2285
PspEI GGTNACC 2 cut(s) 1205, 3238
PspGI CCWGG 3 cut(s) 602, 1731, 2285
PspPI GGNCC 6 cut(s) 170, 773, 1385, 1856, 2456, 3068
PstNI CAGNNNCTG 2 cut(s) 401, 1506
PsuI RGATCY 2 cut(s) 589, 2272
RsaI GTAC 4 cut(s) 739, 899, 2422, 2973
RsaNI GTAC 4 cut(s) 738, 898, 2421, 2972
RseI CAYNNNNRTG 3 cut(s) 985, 2165, 2668
SacI GAGCTC 2 cut(s) 667, 2350
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 9 cut(s) 444, 1380, 1659, 1703, 1775, 2127, 3063, 3203, 3206
Sau3AI GATC 8 cut(s) 589, 1215, 1260, 1623, 1710, 1870, 2272, 2943
Sau96I GGNCC 6 cut(s) 170, 773, 1385, 1856, 2456, 3068
ScaI AGTACT 2 cut(s) 739, 2422
SchI GAGTC 2 cut(s) 349, 1928
ScrFI CCNGG 5 cut(s) 564, 604, 1733, 2247, 2287
SduI GDGCHC 4 cut(s) 667, 1088, 2350, 2771
SfaNI GCATC 1 cut(s) 2082
SfcI CTRYAG 3 cut(s) 348, 420, 2103
SfuI TTCGAA 1 cut(s) 3320
SinI GGWCC 4 cut(s) 170, 1385, 1856, 3068
SmiMI CAYNNNNRTG 3 cut(s) 985, 2165, 2668
SmlI CTYRAG 2 cut(s) 1601, 2252
SmoI CTYRAG 2 cut(s) 1601, 2252
SspMI CTAG 5 cut(s) 182, 1367, 2040, 2093, 3050
SstI GAGCTC 2 cut(s) 667, 2350
StyD4I CCNGG 5 cut(s) 562, 602, 1731, 2245, 2285
StyI CCWWGG 3 cut(s) 9, 1410, 3234
TaiI ACGT 4 cut(s) 903, 2069, 3267, 3292
TaqI TCGA 3 cut(s) 1626, 3267, 3320
TatI WGTACW 3 cut(s) 737, 2420, 2971
TauI GCSGC 7 cut(s) 446, 1382, 1661, 1705, 1777, 2129, 3065
TfiI GAWTC 5 cut(s) 453, 1019, 2098, 2136, 2702
TscAI CASTG 4 cut(s) 660, 1395, 1626, 2343
TseFI GTSAC 6 cut(s) 332, 352, 1205, 2035, 2608, 3238
TseI GCWGC 2 cut(s) 3202, 3205
Tsp45I GTSAC 6 cut(s) 332, 352, 1205, 2035, 2608, 3238
TspGWI ACGGA 7 cut(s) 291, 569, 853, 1977, 1982, 2252, 2536
TspRI CASTG 4 cut(s) 660, 1395, 1626, 2343
Vha464I CTTAAG 1 cut(s) 2252
VpaK11BI GGWCC 4 cut(s) 170, 1385, 1856, 3068
XapI RAATTY 4 cut(s) 414, 1147, 1609, 2830
XbaI TCTAGA 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 2 cut(s) 869, 2552
XmnI GAANNNNTTC 1 cut(s) 1899
XspI CTAG 5 cut(s) 182, 1367, 2040, 2093, 3050
ZrmI AGTACT 2 cut(s) 739, 2422
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.