Rroxscaffold_1G00050780

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000097
Physical Location & Seq
Reverse (-)
71289242 .. 71290163
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050780.1

Sequence Viewer

Length: 903 bp
ATGGTTTTCTGGAATCTGGACAATGTTATAGAATGGATTCCAGAAAAGAAAGATATCCGTTTAAGGGATCTACCATCCTTTTGTCGAACTACAGATCCAGATGACATCCGCTTCAACACCACTATGGAAGCAGTCGAAAACGCAAATAAAGCATCAGCTGTTGTTCTTCTCACATTTGATGCTTTGGAGAAAGATGTTTTGGAAGCCCTCTCCTCATCTATTTCTCCACCTGTTTATACAATTGGTCTTCTCCAATTGCTTCTAAATCAAATACCGGAAGACCCTTTGAAGCCTCTGGGATACAGTCTTTGGAAGGAGGAAACAGACCGTCTCCAATGGCTAAACTGCAAAGCACCGAACTCAATTGTTTATGTCAATTTTGGAAGTATCGCGGTTTTGACACCGGAACAGCTTCTCGAGTTTGGTTGGGGACTTGCAAATACCAAGCTCCCCTTCTTCAGGGTTATTAGGCCTGATTTGGTTGCTGGAAAATCGGCAATCTTGCCGCCAGAATTTGAAGCTGAAACCAAAGACACTAATAGCAAGTTGGTGCCCTCAAGAAGAAGTTCTAAACCATCCATCAGTTGCGGTTGGAATTCAACCATTGAGAGTGTTACTGTTGGAGTGCCGATGCTGTGTTGGCCATTCTTTGCAGACCAGCAAACAAACAGTTACTACAGTTGCAATGAATGGGGAATTGGCATGGAGATCAACACTGATGTCAAGAGAGACAATGTGGAGAAGCTTGTAAAGGAGTTAATGGGGGGAGACAAGGGAAAGAAAATGAAAAGCAAGGCCTTGGAGTGGAAGAAACTGGCTGAAGAAGCCACTGCTCCGCATGGTTCTTCCTCAACAAACTTGGACAATTTATTGAATCAAGTCCTATTAAGAAAACGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

300

Amino Acids

33.77

Weight (kDa)

5.36

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 196 - 258 3.3e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 550
AccII CGCG 1 cut(s) 392
AciI CCGC 5 cut(s) 109, 392, 506, 588, 836
AclWI GGATC 2 cut(s) 75, 89
AcoI YGGCCR 1 cut(s) 641
AcsI RAATTY 2 cut(s) 512, 595
AcuI CTGAAG 2 cut(s) 442, 840
AfiI CCNNNNNNNGG 3 cut(s) 64, 459, 804
AgsI TTSAA 5 cut(s) 115, 289, 518, 600, 874
AjuI GAANNNNNNNTTGG 6 cut(s) 182, 214, 437, 469, 681, 713
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 5 cut(s) 158, 412, 448, 521, 745
AluI AGCT 5 cut(s) 158, 412, 448, 521, 745
Alw26I GTCTC 3 cut(s) 335, 723, 762
AlwI GGATC 2 cut(s) 75, 89
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 3 cut(s) 470, 641, 795
ApoI RAATTY 2 cut(s) 512, 595
Asp700I GAANNNNTTC 3 cut(s) 36, 411, 565
AvaI CYCGRG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 643
BanI GGYRCC 1 cut(s) 550
BbsI GAAGAC 2 cut(s) 239, 285
BccI CCATC 3 cut(s) 82, 583, 587
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 3 cut(s) 335, 723, 762
BfmI CTRYAG 2 cut(s) 90, 676
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 552
BmsI GCATC 3 cut(s) 161, 169, 621
BpiI GAAGAC 2 cut(s) 239, 285
BpuEI CTTGAG 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 2 cut(s) 274, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 459, 804
Bse1I ACTGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 3 cut(s) 74, 105, 575
BseLI CCNNNNNNNGG 3 cut(s) 64, 459, 804
BseMI GCAATG 1 cut(s) 691
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 3 cut(s) 472, 643, 797
BshNI GGYRCC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 275, 404
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 64, 459, 804
BsmAI GTCTC 3 cut(s) 335, 723, 762
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 3 cut(s) 472, 643, 797
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 3 cut(s) 67, 94, 708
BspACI CCGC 5 cut(s) 109, 392, 506, 588, 836
BspANI GGCC 3 cut(s) 472, 643, 797
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 2 cut(s) 75, 89
BspT107I GGYRCC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 691
BsrI ACTGG 1 cut(s) 819
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 3 cut(s) 67, 94, 708
BssT1I CCWWGG 1 cut(s) 798
Bst4CI ACNGT 5 cut(s) 305, 329, 619, 671, 680
BstENI CCTNNNNNAGG 1 cut(s) 457
BstF5I GGATG 3 cut(s) 74, 105, 575
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 3 cut(s) 70, 97, 711
BstMAI GTCTC 3 cut(s) 335, 723, 762
BstMBI GATC 3 cut(s) 67, 94, 708
BstMWI GCNNNNNNNGC 3 cut(s) 149, 640, 824
BstSFI CTRYAG 2 cut(s) 90, 676
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 1 cut(s) 392
BstV2I GAAGAC 2 cut(s) 239, 285
BstX2I RGATCY 2 cut(s) 67, 94
BstYI RGATCY 2 cut(s) 67, 94
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 3 cut(s) 472, 643, 797
BtsCI GGATG 3 cut(s) 74, 105, 575
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 2 cut(s) 714, 828
CviAII CATG 2 cut(s) 703, 839
DpnI GATC 3 cut(s) 69, 96, 710
DpnII GATC 3 cut(s) 67, 94, 708
EaeI YGGCCR 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 798
Eco147I AGGCCT 2 cut(s) 472, 797
Eco32I GATATC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 442, 840
Eco88I CYCGRG 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 595
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 2 cut(s) 706, 842
FaiI YATR 6 cut(s) 29, 125, 237, 372, 704, 840
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 444
FatI CATG 2 cut(s) 702, 838
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 3 cut(s) 61, 92, 562
Fsp4HI GCNGC 1 cut(s) 506
GluI GCNGC 1 cut(s) 506
HaeIII GGCC 3 cut(s) 472, 643, 797
HapII CCGG 2 cut(s) 275, 404
Hin1II CATG 2 cut(s) 706, 842
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 3 cut(s) 13, 37, 874
HpaII CCGG 2 cut(s) 275, 404
Hpy188III TCNNGA 7 cut(s) 10, 17, 41, 98, 416, 558, 724
HpyAV CCTTC 2 cut(s) 307, 463
HpyCH4III ACNGT 5 cut(s) 305, 329, 619, 671, 680
HpyCH4V TGCA 4 cut(s) 348, 437, 653, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 640, 824
Hsp92II CATG 2 cut(s) 706, 842
Kzo9I GATC 3 cut(s) 67, 94, 708
LmnI GCTCC 2 cut(s) 453, 838
LweI GCATC 3 cut(s) 161, 169, 621
MaeIII GTNAC 2 cut(s) 613, 671
MalI GATC 3 cut(s) 69, 96, 710
MboI GATC 3 cut(s) 67, 94, 708
MboII GAAGA 8 cut(s) 158, 239, 290, 448, 573, 820, 833, 837
MfeI CAATTG 3 cut(s) 240, 254, 363
MflI RGATCY 2 cut(s) 67, 94
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 643
MluCI AATT 8 cut(s) 240, 254, 363, 376, 512, 595, 696, 865
MluNI TGGCCA 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 572, 601
MnlI CCTC 6 cut(s) 218, 223, 303, 310, 565, 859
Mox20I TGGCCA 1 cut(s) 643
MroXI GAANNNNTTC 3 cut(s) 36, 411, 565
MscI TGGCCA 1 cut(s) 643
MseI TTAA 4 cut(s) 62, 758, 887, 901
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 643
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 275, 404
MunI CAATTG 3 cut(s) 240, 254, 363
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 3 cut(s) 149, 640, 824
NdeII GATC 3 cut(s) 67, 94, 708
NlaIII CATG 2 cut(s) 706, 842
NlaIV GGNNCC 1 cut(s) 552
PaeR7I CTCGAG 1 cut(s) 416
PceI AGGCCT 2 cut(s) 472, 797
PdmI GAANNNNTTC 3 cut(s) 36, 411, 565
PfeI GAWTC 3 cut(s) 13, 37, 874
PkrI GCNGC 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 552
PsuI RGATCY 2 cut(s) 67, 94
PvuII CAGCTG 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 4 cut(s) 62, 758, 887, 901
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 3 cut(s) 67, 94, 708
SduI GDGCHC 1 cut(s) 555
SetI ASST 6 cut(s) 160, 232, 414, 450, 523, 747
SfaNI GCATC 3 cut(s) 161, 169, 621
SfcI CTRYAG 2 cut(s) 90, 676
Sfr274I CTCGAG 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 416, 556
SmoI CTYRAG 2 cut(s) 416, 556
Sse9I AATT 8 cut(s) 240, 254, 363, 376, 512, 595, 696, 865
SseBI AGGCCT 2 cut(s) 472, 797
SsiI CCGC 5 cut(s) 109, 392, 506, 588, 836
StuI AGGCCT 2 cut(s) 472, 797
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 5 cut(s) 305, 329, 619, 671, 680
TaqI TCGA 3 cut(s) 85, 135, 417
TasI AATT 8 cut(s) 240, 254, 363, 376, 512, 595, 696, 865
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 3 cut(s) 13, 37, 874
Tru1I TTAA 4 cut(s) 62, 758, 887, 901
Tru9I TTAA 4 cut(s) 62, 758, 887, 901
TscAI CASTG 2 cut(s) 721, 835
TspDTI ATGAA 2 cut(s) 702, 800
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 721, 835
XagI CCTNNNNNAGG 1 cut(s) 457
XapI RAATTY 2 cut(s) 512, 595
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 3 cut(s) 36, 411, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.