RchiOBHm_Chr2g0153911

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000097
Physical Location & Seq
Forward (+)
71146890 .. 71148021
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52297

Sequence Viewer

Length: 738 bp
ATGCTAAAATTTTCAAGACTCCTCCACCATAAAGGTTTTCACATCACCTTTGTCAACACAGAGTTCAACCACAAGCGCTTTTTGAAATCTCTAGGACCTGACGCTCTTGATGGCTCCCCTGATTTTCGTTTCGTAACTATTCCGGATGGTCTTCAAAACTCGGATGAAGATACCACCCAAGACCACATATTGCTTGATGAGAGCTGGTTAACAAATGGTTTCTTGGACAAGGTGACAGATTGGGTTCCAGGATTCAAATCTATACGTTTAAGGGATCTCCCAAACAATTTTATGATTACAAATCCCAATGACACCCATTGGACCTTTTGCTTGCAAGCAATTGAAAGAGTTGGCGAAGCTTCAGCTTTCATTCTTCATACTTTTGATGCTCTGGAGTCACATGTTTTGGAAGCTTTCTCTTCAACTATGCTTGTTTATACGATTGGGCCTCTCCAACTACTTCTCAATCAATTACCAGAAGAATCTTTGAAGCCTATGGGGTACAGTGTATGGAAAGAAGAAACTGACTGCCTCCAAGGCACCAAACTCAGTTCTCTGCCATTCTTGTGGGTGATAAGGCCTGATTTGGTTGTTGGTGAATCAGCAATTTTGCCACCGGAGTTTGTGACCGAAACTAAAGATAGAGGTCTACTAGCAAGTTGGTGTCCGCAAGAGGAAGTGCTTAGCCACCCATCAGTTGGAGGGTTTTTGACACAGTGGGTGGAATTCGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

245

Amino Acids

27.91

Weight (kDa)

4.89

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 668
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 2 cut(s) 8, 725
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 503
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 698
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 8 cut(s) 15, 67, 85, 155, 256, 344, 423, 490
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 204, 359, 365, 413
AluI AGCT 4 cut(s) 204, 359, 365, 413
AlwI GGATC 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 142
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 2 cut(s) 446, 578
ApoI RAATTY 2 cut(s) 8, 725
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 95, 321, 446
AsuHPI GGTGA 4 cut(s) 37, 244, 583, 608
AvaII GGWCC 2 cut(s) 95, 321
BanI GGYRCC 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 143
BccI CCATC 3 cut(s) 104, 140, 700
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 92, 653
BfoI RGCGCY 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 537
BlpI GCTNAGC 1 cut(s) 683
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 2 cut(s) 95, 321
BmgT120I GGNCC 3 cut(s) 95, 321, 446
BmiI GGNNCC 3 cut(s) 115, 246, 541
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 413
Bpu1102I GCTNAGC 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 535
BsaWI WCCGGW 2 cut(s) 142, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 2 cut(s) 151, 169
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 11
BshFI GGCC 2 cut(s) 448, 580
BshNI GGYRCC 1 cut(s) 539
BsiSI CCGG 2 cut(s) 143, 617
BslI CCNNNNNNNGG 1 cut(s) 698
BsnI GGCC 2 cut(s) 448, 580
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 683
BspACI CCGC 1 cut(s) 668
BspANI GGCC 2 cut(s) 448, 580
BspCNI CTCAG 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 115, 246, 541
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 506, 717
Bst6I CTCTTC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 332, 336
BstDEI CTNAG 2 cut(s) 548, 683
BstF5I GGATG 2 cut(s) 151, 169
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 537
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 567
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 2 cut(s) 448, 580
BtsCI GGATG 2 cut(s) 151, 169
BtsIMutI CAGTG 2 cut(s) 511, 722
Cac8I GCNNGC 2 cut(s) 332, 336
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 95, 321, 446
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 502
CviAII CATG 1 cut(s) 401
CviJI RGCY 9 cut(s) 114, 204, 359, 365, 413, 448, 493, 580, 687
CviKI_1 RGCY 9 cut(s) 114, 204, 359, 365, 413, 448, 493, 580, 687
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 548, 683
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 95, 321
Eco47III AGCGCT 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 1 cut(s) 404
FatI CATG 1 cut(s) 400
FblI GTMKAC 1 cut(s) 649
FokI GGATG 2 cut(s) 158, 176
FspBI CTAG 2 cut(s) 92, 653
GlaI GCGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 413
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 448, 580
HapII CCGG 2 cut(s) 143, 617
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 404
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 2 cut(s) 55, 210
HindII GTYRAC 2 cut(s) 55, 210
HindIII AAGCTT 2 cut(s) 357, 411
HinfI GANTC 5 cut(s) 18, 252, 395, 482, 599
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 2 cut(s) 143, 617
HphI GGTGA 4 cut(s) 37, 244, 583, 608
Hpy166II GTNNAC 3 cut(s) 55, 210, 650
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 15, 107, 143, 392
Hpy8I GTNNAC 3 cut(s) 55, 210, 650
HpyCH4III ACNGT 2 cut(s) 506, 717
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 537
HpyF3I CTNAG 2 cut(s) 548, 683
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 404
HspAI GCGC 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 142
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 119
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 92, 653
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 4 cut(s) 133, 232, 396, 625
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 143, 179, 365, 411, 491, 530
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 274
MluCI AATT 6 cut(s) 8, 286, 339, 470, 606, 725
MlyI GAGTC 2 cut(s) 12, 404
MmeI TCCRAC 2 cut(s) 478, 679
MnlI CCTC 6 cut(s) 32, 459, 542, 638, 667, 695
MroI TCCGGA 1 cut(s) 142
MseI TTAA 2 cut(s) 209, 269
MslI CAYNNNNRTG 1 cut(s) 565
MspI CCGG 2 cut(s) 143, 617
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 537
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 3 cut(s) 115, 246, 541
NmuCI GTSAC 3 cut(s) 232, 396, 625
NspI RCATGY 1 cut(s) 404
PceI AGGCCT 1 cut(s) 580
PciI ACATGT 1 cut(s) 400
PfeI GAWTC 3 cut(s) 252, 482, 599
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 247
PleI GAGTC 2 cut(s) 12, 403
PpsI GAGTC 2 cut(s) 12, 403
PpuMI RGGWCCY 1 cut(s) 95
PscI ACATGT 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 115, 246, 541
PspPI GGNCC 3 cut(s) 95, 321, 446
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 565
SaqAI TTAA 2 cut(s) 209, 269
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 3 cut(s) 95, 321, 446
SchI GAGTC 2 cut(s) 12, 404
ScrFI CCNGG 1 cut(s) 249
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 2 cut(s) 95, 321
SmiMI CAYNNNNRTG 1 cut(s) 565
Sse9I AATT 6 cut(s) 8, 286, 339, 470, 606, 725
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 1 cut(s) 668
SspMI CTAG 2 cut(s) 92, 653
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 506, 717
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 729
TaqII GACCGA 1 cut(s) 644
TasI AATT 6 cut(s) 8, 286, 339, 470, 606, 725
TfiI GAWTC 3 cut(s) 252, 482, 599
Tru1I TTAA 2 cut(s) 209, 269
Tru9I TTAA 2 cut(s) 209, 269
TscAI CASTG 2 cut(s) 511, 722
TseFI GTSAC 3 cut(s) 232, 396, 625
Tsp45I GTSAC 3 cut(s) 232, 396, 625
TspDTI ATGAA 3 cut(s) 180, 358, 365
TspRI CASTG 2 cut(s) 511, 722
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 95, 321
XapI RAATTY 2 cut(s) 8, 725
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmiI GTMKAC 1 cut(s) 649
XspI CTAG 2 cut(s) 92, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.