Rorug02G0443900

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000097
Physical Location & Seq
Forward (+)
57024162 .. 57034466
10305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0443900.1

Sequence Viewer

Length: 3207 bp
ATGGATTTCGAAATGGACACTTCTCCCAGCTACTTCGACCCGGAAAACCTCACCACCAGAGAGCAATTTCGTCGCTACGGGAAAAGGCACCCGAATTCGAGCATTTCGCCCTACCGAGAGAATTCGGCTTCGTCCGGGCTACTGTATGATGGCCAGAGCAATATCCACAGCCCTACTAATGCTGCACTTCTTCTGGAAAATATTAAACAAGAATTTGAAAGCACTCCTGCAAAGACTCGTTCCGTCCCTAAAAGGCCGTCGTCGTTTGATGTTACCGAGGTGGATGATAGCGCTGAGGCAGTGCGGTATTCGTTGAAGCTTTGCAAGCATGAGGAGGACTCGCTGGCTGATGATGGAGATACGACTTTTGCTCTATTTGCATCCCTACTTGACTCTGCTCTTCAAGGGTTGATTCCATTTTCTGACCTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTATGTACGGTTCCAACATACGGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCCTGGTCCCTCCTCTGGTACCTTTTTGGAAAAGGGACCGAAGAGATCCCTAAAAAACTCATCATGTTTCCCTCAACATCACATTTGGAGGCTTGCCAGTTTGTTGCGGACAATCTTACAGCACAGTTATGCTTACGAATTGTTCAATGGCTAGAAGGCTTGACTTCCAAAGCACTTGATCTGGAAAGAAAGGTGCGAGGGTCTCATGTTGGTGCCTGTCTCCCAAGCTCTGGAATTTGGTTCCATACTCAACGCTATCTTAAGAAAGGAACATCCAGTACAAATACTGTTCATCACTTGGATTTTGATGCCCCGACACGAGAACATGCTCATCTACTACCTGATGACAAAAAACATGATGAATCTCTTTTGGAAGATGTCTGGACTCTTTTGAGAGCAGGAAGACTGGAGGAGGCATGTAACCTTTGCCGGTCTAAGGGACAGGCATGGAGAGCTGCAACCTTGTGCATATTTGGAGGTTCTGACCAATCTCCGTCAATTGAAGCCCTGGTGAGGAATGGAAAGAATAGAACCTTGCAAGCCATTGAATTGGAAAGTCGCATTGGCCACCAATGGTATCTCTGGAAATGGGCTTCTTATTGTGCATCAGAGAAAATAGCCGAGCAAGATGCTGGCAAATATGAAGCAGCAGTCTATGCGGCACAATGTAGCAATTTAAGGCGCATGCTTCCAATCTGCACTGACTGGGAGTCAGCGTGCTGGGCAATAGCAAAGTCATGGCTAGATTTTCAGGTGGATTCGGAATTGGCTCATTTACAACCAGAAAGACTGGATCAAATTACAAGCACTGCAGATGCAATTGATGGAAGTCCAGCACATGGTGATGGAGCTGTTCAGCCTTCAAGTGGACCAGGAAGTTGGCCACTCCAAGTTTCAAACCAGCAACCACGGCAACTTTTAGATCTCATTCAGAAACTTCATTCAGGGGAATTGGTCCACGAAAGCGTTACTCGAGGATGCAAGGAACCACAACGACAAATTGAGATGATTCTAATGTTAGGGGATATCCCACGATTGCTGGACCTTATATGGTCATGGATTGCACCTTCAGAAGATGATCAGAATGTCTTCAGGCCTCATGGGGATCCTCAGATGATTCGGTTTGGTGCACATCTAGTGCTTGTGCTTAGATACTTACTTGATGATGAATTCAAGGATACTGTCAGAGAGAAAATCATGAATATTGGTGATCTCATTGTACACATGTATGCCATGTTTCTCTTTTCTAACCAACATGAGGAACTGGTGGGTATATATGCTTCTCAGCTTGCACGCCACCGTTGCATTGACCTCTTCGTGCACATGATGGAATTGAGGCTGGACAGCAGTGTGCATGTCAAATATAAGATCTTCCTCTCTGCTATAGAGTATTTACAATTTTCTCCTCTAGACAATTCAAAAGCAAGTTTTGAAGAAATTGTTGAGAGGGTTTTTTCAAGATCTCGGGAAATCAAAGTTAGTCAATATGATAAGATATCAGGTGTTGCAGAACAGCACCGGTTGCAGAGTCTTCAAAAAGCGATGGTTATCCAGTGGCTATGTTTTACACCCCCCTCCACCATTAGTAATGTTGAGGGTGTCGGCAGAAATCTTCTTCTGCGAGCACTAGTACATAGCAATATATTGTTCAGGGAGTTTTCACTGGTTTCAATGTGGAGAGTTCCTGCAGTGCCCATTGGTGCCCACACAGTACTTAGTTTTCTTGCTGAACCTTTGAAGCAACTTTCGGAATCTTCTGATACCTTGGAGGATGTTTCTCAAAAGCTGAAAGAGTTCCACGACTGGAATGAGTATTATTCTTGTGATGCAAAATACCGGAATTGGCTCAAAATTAAATTAGAGAATGCAGAGGTGTCGCCAATTGACCTCTCAATGGACGAAAAACAAAGGGCTGTTTCAGCAGCCAAGGAGACTTTGAATTCATCTCTGTCATTGCTACTGAGAAAAGAAAATCCTTGGTTAGCTTCTGGTCATGTCTATGGATCTGTGGAACCTACATTTCTTGAATTGCATGCCACAGCAATGCTATGCTTGCCTTCTGGTGAGTGTCTGTTTCCAGATGCAACCGTGTGTACAACGTTGATGAGTGCTCTTTACTCTTCCGTGAGTGAGGAAGATGTGTTAAACCGCCAATTAATGTTAAATGTCTCCATATCATCAAAGGATAATTGCTGCGTAGAGGTTGTGCTTCGCTGCTTGGCAGTTCCAGGTGATGGTTTTGGGCCACAGGAACATGATGATGGAGGTATTCTTGGTACTGTTATGGCTGCCGGCTTCAAAGGTGAGTTACCTCGATTTCAACCTGGAGTTACAATGGACATTTCCCGATTAGATGCCTGGTATTCAAGCAAGGATGGTTCTTTAGAAAGTCCAGCAACATACATTGTGCAGGGCCTTTGTCGTAGGTGCTGTCTTCCAGAAGTCATTCTTCGATGCATGCAGGTCTCACTCTCGCTCATAGAGTTGGGTATTGCACCTGAAAGCCATGATCAGTTGATTGAATTAGTTGCTTGCCCTGAAGCTGGGTTTCTTCATTTGTTTAGTCACCAACAATTGCAGGAATTTTTATTGTTTGAGAGGGAATACTCGATAAGCCAAATGGAGGTTCAAGAGGAAATTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

1068

Amino Acids

120.49

Weight (kDa)

5.29

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup84_Nup100 PF04121 181 - 847 9.1e-61 Nuclear pore protein 84 / 107
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17511 FvH4_3g17550 FvH4_3g17550 FvH4_3g17550 FvH4_6g39790 FvH4_6g39792 FvH4_6g39810 FvH4_6g39810 FvH4_6g39810 FvH4_6g39811 FvH4_6g39813 FvH4_6g39814 FvH4_6g39814 FvH4_6g39840 FvH4_6g39842 FvH4_6g39843 FvH4_6g39845 FvH4_6g39850 FvH4_6g39870 FvH4_6g39871 FvH4_6g39871 FvH4_6g39871 FvH4_6g39872
malus_domestica MD00G1121500.v1.1 MD09G1135900.v1.1 MD09G1136000.v1.1 MD09G1136200.v1.1 MD09G1142300.v1.1 MD09G1142500.v1.1 MD09G1142800.v1.1 MD11G1215800.v1.1 MD13G1225900.v1.1 MD13G1226000.v1.1 MD16G1231000.v1.1 MD16G1231100.v1.1 MD17G1124400.v1.1 MD17G1124800.v1.1 MD17G1124900.v1.1 MD17G1125000.v1.1 MD17G1125400.v1.1 MD17G1125700.v1.1 MD17G1125800.v1.1 MD17G1125900.v1.1 MD17G1126300.v1.1 MD17G1126400.v1.1 MD17G1126700.v1.1 MD17G1126800.v1.1 MD17G1126900.v1.1
prunus_persica Prupe.1G053100_v2.0.a1 Prupe.1G053200_v2.0.a1 Prupe.1G053300_v2.0.a1 Prupe.1G053400_v2.0.a1 Prupe.1G053500_v2.0.a1 Prupe.1G055800_v2.0.a1 Prupe.3G188400_v2.0.a1 Prupe.3G188500_v2.0.a1 Prupe.3G188600_v2.0.a1 Prupe.3G188700_v2.0.a1 Prupe.3G189100_v2.0.a1 Prupe.3G189300_v2.0.a1 Prupe.3G189500_v2.0.a1 Prupe.3G189600_v2.0.a1 Prupe.3G189700_v2.0.a1 Prupe.3G190100_v2.0.a1 Prupe.3G190300_v2.0.a1 Prupe.3G190400_v2.0.a1 Prupe.3G190500_v2.0.a1 Prupe.3G190600_v2.0.a1 Prupe.3G190800_v2.0.a1 Prupe.4G236600_v2.0.a1 Prupe.4G236700_v2.0.a1 Prupe.4G236800_v2.0.a1 Prupe.4G237000_v2.0.a1
pyrus_communis pycom09g05690 pycom09g05700 pycom09g05710 pycom09g05720 pycom09g05730 pycom09g05740 pycom09g05750 pycom09g05760 pycom09g05770 pycom09g06250 pycom09g06260 pycom09g06280 pycom13g19910 pycom16g19350 pycom17g11590 pycom17g11650 pycom17g11670 pycom17g11680 pycom17g11690 pycom17g11760 pycom17g11780 pycom17g11800 pycom17g11820 pycom17g11830 pycom17g11860 pycom17g11870
rosa_chinensis RchiOBHm_Chr1g0340871 RchiOBHm_Chr2g0124501 RchiOBHm_Chr2g0149801 RchiOBHm_Chr2g0149811 RchiOBHm_Chr2g0153911 RchiOBHm_Chr2g0153971 RchiOBHm_Chr2g0153981 RchiOBHm_Chr2g0154001 RchiOBHm_Chr2g0154021 RchiOBHm_Chr2g0154031 RchiOBHm_Chr2g0154041 RchiOBHm_Chr2g0154061 RchiOBHm_Chr2g0154071 RchiOBHm_Chr2g0154151 RchiOBHm_Chr2g0154191 RchiOBHm_Chr2g0154221 RchiOBHm_Chr2g0154301 RchiOBHm_Chr2g0154321 RchiOBHm_Chr2g0154331 RchiOBHm_Chr2g0154341 RchiOBHm_Chr2g0154351 RchiOBHm_Chr2g0154371 RchiOBHm_Chr5g0029061 RchiOBHm_Chr5g0029111 RchiOBHm_Chr5g0029131 RchiOBHm_Chr5g0029151 RchiOBHm_Chr5g0029271 RchiOBHm_Chr5g0038461 RchiOBHm_Chr5g0038821 RchiOBHm_Chr5g0059331 RchiOBHm_Chr7g0211221
rosa_laevigata RLG00000003018 RLG00000009631 RLG00000018804 RLG00000019613 RLG00000019617 RLG00000020446 RLG00000020447 RLG00000020738 RLG00000020742 RLG00000020743 RLG00000020746 RLG00000020752 RLG00000020754 RLG00000020755 RLG00000020756 RLG00000020759 RLG00000020761 RLG00000020762 RLG00000020765 RLG00000020770 RLG00000020771 RLG00000020772 RLG00000020773 RLG00000020774 RLG00000033136 RLG00000033146 RLG00000033148 RLG00000033870 RLG00000033876
rosa_multiflora Rmu_co8137600.1_g000001 Rmu_co8174218.1_g000001 Rmu_co8313823.1_g000001 Rmu_sc0000533.1_g000092 Rmu_sc0000857.1_g000006 Rmu_sc0000857.1_g000021 Rmu_sc0000857.1_g000028 Rmu_sc0001017.1_g000018 Rmu_sc0002214.1_g000001 Rmu_sc0002214.1_g000010 Rmu_sc0002474.1_g000003 Rmu_sc0002474.1_g000011 Rmu_sc0002474.1_g000015 Rmu_sc0003808.1_g000003 Rmu_sc0005195.1_g000001 Rmu_sc0005836.1_g000010 Rmu_sc0006451.1_g000005 Rmu_sc0007313.1_g000006 Rmu_sc0007324.1_g000011 Rmu_sc0012347.1_g000008 Rmu_sc0012977.1_g000001 Rmu_sc0014312.1_g000004 Rmu_sc0014312.1_g000005 Rmu_sc0015490.1_g000001 Rmu_sc0018451.1_g000003 Rmu_sc0022116.1_g000004 Rmu_sc0022116.1_g000005 Rmu_sc0025399.1_g000001 Rmu_sc0031326.1_g000001 Rmu_sc0031654.1_g000002 Rmu_ssc0000308.1_g000037
rosa_roxburghii Rroxscaffold_1G00042160 Rroxscaffold_1G00042210 Rroxscaffold_1G00050730 Rroxscaffold_1G00050780 Rroxscaffold_2G00094400 Rroxscaffold_2G00094410 Rroxscaffold_2G00094420 Rroxscaffold_2G00094440 Rroxscaffold_2G00094470 Rroxscaffold_2G00094480 Rroxscaffold_2G00094490 Rroxscaffold_2G00094510 Rroxscaffold_2G00094520 Rroxscaffold_2G00094530 Rroxscaffold_2G00094540 Rroxscaffold_2G00094550 Rroxscaffold_2G00094560 Rroxscaffold_2G00094590 Rroxscaffold_2G00094660 Rroxscaffold_2G00097680 Rroxscaffold_2G00121030 Rroxscaffold_2G00121040 Rroxscaffold_5G00340200
rosa_rugosa Rorug02G0416600 Rorug02G0416700 Rorug02G0443200 Rorug02G0443400 Rorug02G0443500 Rorug02G0443600 Rorug02G0443700 Rorug02G0443900 Rorug02G0444000 Rorug03G0256900 Rorug03G0257000 Rorug05G0112400 Rorug05G0112600 Rorug05G0174300 Rorug07G0124600
rosa_samantha Rh2BG318500 Rh2BG487300 Rh2BG487500 Rh2BG516900 Rh2BG517000 Rh2BG518000 Rh2BG518100 Rh2BG518300 Rh2BG518400 Rh2BG518500 Rh2BG519400 Rh2BG519500 Rh2BG519600 Rh2BG519700 Rh5BG203100 Rh5BG203500 Rh5BG265800 Rh5BG398100 Rh7CG273600
rosa_wichuraiana Rw2G038790 Rw2G038800 Rw2G041610 Rw2G041620 Rw2G041640 Rw2G041660 Rw2G041670 Rw2G041680 Rw2G041690 Rw2G041700 Rw2G041720 Rw2G041730 Rw2G041740 Rw2G041750 Rw5G018550 Rw5G018570 Rw5G018590 Rw5G018610 Rw5G024410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 3010
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 4 cut(s) 87, 576, 770, 2258
AccB7I CCANNNNNTGG 3 cut(s) 788, 1397, 2792
AciI CCGC 4 cut(s) 304, 665, 1217, 2707
AclI AACGTT 1 cut(s) 2657
AclWI GGATC 5 cut(s) 598, 1359, 1658, 1671, 2569
AcoI YGGCCR 3 cut(s) 151, 1123, 1439
AcsI RAATTY 8 cut(s) 94, 121, 212, 792, 1727, 2497, 3140, 3195
AcuI CTGAAG 3 cut(s) 1611, 1633, 3117
AdeI CACNNNGTG 1 cut(s) 1400
AfaI GTAC 8 cut(s) 479, 578, 838, 1779, 2190, 2271, 2653, 2836
AfeI AGCGCT 1 cut(s) 292
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 1782
AgeI ACCGGT 1 cut(s) 2076
AhdI GACNNNNNGTC 1 cut(s) 1267
AhlI ACTAGT 1 cut(s) 2185
AjnI CCWGG 6 cut(s) 560, 1065, 1429, 2785, 2881, 2915
AjuI GAANNNNNNNTTGG 4 cut(s) 1104, 1136, 3168, 3200
AluBI AGCT 9 cut(s) 30, 319, 786, 1013, 1409, 1846, 2344, 2543, 3101
AluI AGCT 9 cut(s) 30, 319, 786, 1013, 1409, 1846, 2344, 2543, 3101
Alw21I GWGCWC 4 cut(s) 1690, 1881, 2185, 2671
Alw26I GTCTC 5 cut(s) 765, 782, 2483, 2731, 3028
Alw44I GTGCAC 2 cut(s) 1686, 1877
AlwI GGATC 5 cut(s) 598, 1359, 1658, 1671, 2569
Ama87I CYCGRG 2 cut(s) 1530, 2022
Aor51HI AGCGCT 1 cut(s) 292
AoxI GGCC 7 cut(s) 151, 254, 1123, 1439, 1652, 2801, 2971
ApaLI GTGCAC 2 cut(s) 1686, 1877
ApeKI GCWGC 8 cut(s) 182, 554, 1013, 1205, 2480, 2751, 2772, 2846
ApoI RAATTY 8 cut(s) 94, 121, 212, 792, 1727, 2497, 3140, 3195
AseI ATTAAT 1 cut(s) 2714
AsiGI ACCGGT 1 cut(s) 2076
Asp700I GAANNNNTTC 4 cut(s) 460, 1646, 2351, 3003
Asp718I GGTACC 1 cut(s) 576
AspLEI GCGC 2 cut(s) 293, 1242
AspS9I GGNCC 7 cut(s) 564, 594, 1427, 1513, 1600, 2801, 2971
AsuC2I CCSGG 2 cut(s) 41, 136
AsuHPI GGTGA 8 cut(s) 43, 1081, 1412, 1778, 2633, 2801, 2873, 3116
AsuII TTCGAA 1 cut(s) 9
AvaI CYCGRG 2 cut(s) 1530, 2022
AvaII GGWCC 5 cut(s) 564, 594, 1427, 1513, 1600
BaeGI GKGCMC 4 cut(s) 1690, 1881, 2253, 2263
BalI TGGCCA 3 cut(s) 153, 1125, 1441
BamHI GGATCC 1 cut(s) 1663
BanI GGYRCC 4 cut(s) 87, 576, 770, 2258
BarI GAAGNNNNNNTAC 2 cut(s) 1822, 1854
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 4 cut(s) 967, 1639, 2081, 2984
Bbv12I GWGCWC 4 cut(s) 1690, 1881, 2185, 2671
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 8 cut(s) 169, 541, 1000, 1217, 2492, 2738, 2759, 2833
BccI CCATC 9 cut(s) 143, 347, 1376, 1397, 1879, 2095, 2786, 2813, 2927
BceAI ACGGC 3 cut(s) 241, 509, 1484
BcgI CGANNNNNNTGC 6 cut(s) 53, 87, 1169, 1203, 2415, 2449
BciT130I CCWGG 6 cut(s) 562, 1067, 1431, 2787, 2883, 2917
BciVI GTATCC 1 cut(s) 1729
BclI TGATCA 2 cut(s) 1636, 3067
BcnI CCSGG 2 cut(s) 41, 136
BcoDI GTCTC 5 cut(s) 765, 782, 2483, 2731, 3028
BcuI ACTAGT 1 cut(s) 2185
BfaI CTAG 5 cut(s) 710, 1301, 1694, 1967, 2186
BfmI CTRYAG 3 cut(s) 1368, 1941, 2244
BfoI RGCGCY 1 cut(s) 294
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 3010
BfuI GTATCC 1 cut(s) 1729
BglII AGATCT 3 cut(s) 1480, 1926, 2018
BisI GCNGC 9 cut(s) 183, 555, 1014, 1206, 1218, 2481, 2752, 2773, 2847
BlsI GCNGC 9 cut(s) 184, 556, 1015, 1207, 1219, 2482, 2753, 2774, 2848
BmcAI AGTACT 1 cut(s) 2271
Bme1390I CCNGG 8 cut(s) 41, 136, 562, 1067, 1431, 2787, 2883, 2917
Bme18I GGWCC 5 cut(s) 564, 594, 1427, 1513, 1600
BmeRI GACNNNNNGTC 1 cut(s) 1267
BmeT110I CYCGRG 2 cut(s) 1530, 2022
BmgT120I GGNCC 7 cut(s) 564, 594, 1427, 1513, 1600, 2801, 2971
BmrFI CCNGG 8 cut(s) 41, 136, 562, 1067, 1431, 2787, 2883, 2917
BmrI ACTGGG 1 cut(s) 1273
BmuI ACTGGG 1 cut(s) 1273
BpiI GAAGAC 4 cut(s) 967, 1639, 2081, 2984
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 2 cut(s) 986, 2904
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 41, 136
BsaBI GATNNNNATC 1 cut(s) 2105
BsaI GGTCTC 2 cut(s) 765, 3028
BsaJI CCNNGG 6 cut(s) 276, 1065, 1466, 2322, 2484, 2534
BsaWI WCCGGW 2 cut(s) 2076, 2394
BsaXI ACNNNNNCTCC 2 cut(s) 1259, 1289
Bse118I RCCGGY 3 cut(s) 987, 2076, 2849
Bse1I ACTGG 9 cut(s) 655, 834, 969, 1268, 1353, 1827, 2110, 2226, 2366
Bse3DI GCAATG 2 cut(s) 2510, 2607
Bse8I GATNNNNATC 1 cut(s) 2105
BseBI CCWGG 6 cut(s) 562, 1067, 1431, 2787, 2883, 2917
BseDI CCNNGG 6 cut(s) 276, 1065, 1466, 2322, 2484, 2534
BseGI GGATG 6 cut(s) 289, 380, 830, 1541, 2335, 2938
BseJI GATNNNNATC 1 cut(s) 2105
BseMI GCAATG 2 cut(s) 2510, 2607
BseMII CTCAG 4 cut(s) 285, 1682, 1856, 2510
BseNI ACTGG 9 cut(s) 655, 834, 969, 1268, 1353, 1827, 2110, 2226, 2366
BseRI GAGGAG 4 cut(s) 347, 560, 983, 1953
BseSI GKGCMC 4 cut(s) 1690, 1881, 2253, 2263
BseXI GCAGC 8 cut(s) 169, 541, 1000, 1217, 2492, 2738, 2759, 2833
BseYI CCCAGC 3 cut(s) 26, 1278, 3101
BsgI GTGCAG 3 cut(s) 168, 1240, 2987
BshFI GGCC 7 cut(s) 153, 256, 1125, 1441, 1654, 2803, 2973
BshNI GGYRCC 4 cut(s) 87, 576, 770, 2258
BshTI ACCGGT 1 cut(s) 2076
BsiHKAI GWGCWC 4 cut(s) 1690, 1881, 2185, 2671
BsiHKCI CYCGRG 2 cut(s) 1530, 2022
BsiSI CCGG 6 cut(s) 41, 135, 988, 2077, 2395, 2850
BslFI GGGAC 4 cut(s) 230, 550, 607, 1011
BsmAI GTCTC 5 cut(s) 765, 782, 2483, 2731, 3028
BsmFI GGGAC 4 cut(s) 230, 550, 607, 1011
BsmI GAATGC 1 cut(s) 2428
BsnI GGCC 7 cut(s) 153, 256, 1125, 1441, 1654, 2803, 2973
Bso31I GGTCTC 2 cut(s) 765, 3028
BsoBI CYCGRG 2 cut(s) 1530, 2022
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 6 cut(s) 1690, 1881, 2185, 2253, 2263, 2671
Bsp1407I TGTACA 2 cut(s) 1777, 2651
BspACI CCGC 4 cut(s) 304, 665, 1217, 2707
BspANI GGCC 7 cut(s) 153, 256, 1125, 1441, 1654, 2803, 2973
BspCNI CTCAG 4 cut(s) 286, 1681, 1855, 2511
BspHI TCATGA 1 cut(s) 1755
BspMAI CTGCAG 2 cut(s) 1372, 2248
BspMI ACCTGC 1 cut(s) 3010
BspPI GGATC 5 cut(s) 598, 1359, 1658, 1671, 2569
BspQI GCTCTTC 1 cut(s) 405
BspT104I TTCGAA 1 cut(s) 9
BspT107I GGYRCC 4 cut(s) 87, 576, 770, 2258
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 2 cut(s) 765, 3028
BsrDI GCAATG 2 cut(s) 2510, 2607
BsrFI RCCGGY 3 cut(s) 987, 2076, 2849
BsrGI TGTACA 2 cut(s) 1777, 2651
BsrI ACTGG 9 cut(s) 655, 834, 969, 1268, 1353, 1827, 2110, 2226, 2366
BssAI RCCGGY 3 cut(s) 987, 2076, 2849
BssECI CCNNGG 6 cut(s) 276, 1065, 1466, 2322, 2484, 2534
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 3 cut(s) 2322, 2484, 2534
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 6 cut(s) 562, 1067, 1431, 2787, 2883, 2917
Bst4CI ACNGT 9 cut(s) 144, 482, 684, 847, 1741, 1859, 2269, 2647, 2839
Bst6I CTCTTC 4 cut(s) 405, 594, 1877, 2683
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 2 cut(s) 1214, 2080
BstAUI TGTACA 2 cut(s) 1777, 2651
BstBI TTCGAA 1 cut(s) 9
BstDEI CTNAG 8 cut(s) 294, 434, 993, 1668, 1706, 1842, 2273, 2519
BstDSI CCRYGG 1 cut(s) 1466
BstF5I GGATG 6 cut(s) 289, 380, 830, 1541, 2335, 2938
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 293, 1242
BstMAI GTCTC 5 cut(s) 765, 782, 2483, 2731, 3028
BstNI CCWGG 6 cut(s) 562, 1067, 1431, 2787, 2883, 2917
BstNSI RCATGY 7 cut(s) 887, 978, 1246, 1786, 1916, 2594, 3019
BstSCI CCNGG 8 cut(s) 39, 134, 560, 1065, 1429, 2785, 2881, 2915
BstSFI CTRYAG 3 cut(s) 1368, 1941, 2244
BstSLI GKGCMC 4 cut(s) 1690, 1881, 2253, 2263
BstV1I GCAGC 8 cut(s) 169, 541, 1000, 1217, 2492, 2738, 2759, 2833
BstV2I GAAGAC 4 cut(s) 967, 1639, 2081, 2984
BstX2I RGATCY 6 cut(s) 603, 1480, 1663, 1926, 2018, 2561
BstXI CCANNNNNNTGG 2 cut(s) 1108, 1437
BstYI RGATCY 6 cut(s) 603, 1480, 1663, 1926, 2018, 2561
BsuI GTATCC 1 cut(s) 1729
BsuRI GGCC 7 cut(s) 153, 256, 1125, 1441, 1654, 2803, 2973
BtgI CCRYGG 1 cut(s) 1466
BtgZI GCGATG 1 cut(s) 2114
BtsCI GGATG 6 cut(s) 289, 380, 830, 1541, 2335, 2938
BtsI GCAGTG 4 cut(s) 306, 1365, 1912, 2253
BtsIMutI CAGTG 7 cut(s) 306, 1257, 1365, 1912, 2117, 2219, 2253
BveI ACCTGC 1 cut(s) 3010
CciI TCATGA 1 cut(s) 1755
CfoI GCGC 2 cut(s) 293, 1242
Cfr10I RCCGGY 3 cut(s) 987, 2076, 2849
Cfr13I GGNCC 7 cut(s) 564, 594, 1427, 1513, 1600, 2801, 2971
Csp6I GTAC 8 cut(s) 478, 577, 837, 1778, 2189, 2270, 2652, 2835
CspAI ACCGGT 1 cut(s) 2076
CviQI GTAC 8 cut(s) 478, 577, 837, 1778, 2189, 2270, 2652, 2835
DdeI CTNAG 8 cut(s) 294, 434, 993, 1668, 1706, 1842, 2273, 2519
DraIII CACNNNGTG 1 cut(s) 1400
DriI GACNNNNNGTC 1 cut(s) 1267
EaeI YGGCCR 3 cut(s) 151, 1123, 1439
Eam1104I CTCTTC 4 cut(s) 405, 594, 1877, 2683
Eam1105I GACNNNNNGTC 1 cut(s) 1267
EarI CTCTTC 4 cut(s) 405, 594, 1877, 2683
Eco130I CCWWGG 3 cut(s) 2322, 2484, 2534
Eco147I AGGCCT 1 cut(s) 1654
Eco31I GGTCTC 2 cut(s) 765, 3028
Eco32I GATATC 2 cut(s) 1585, 2055
Eco47I GGWCC 5 cut(s) 564, 594, 1427, 1513, 1600
Eco47III AGCGCT 1 cut(s) 292
Eco57I CTGAAG 3 cut(s) 1611, 1633, 3117
Eco88I CYCGRG 2 cut(s) 1530, 2022
EcoO109I RGGNCCY 1 cut(s) 2971
EcoRI GAATTC 4 cut(s) 94, 121, 1727, 2497
EcoRII CCWGG 6 cut(s) 560, 1065, 1429, 2785, 2881, 2915
EcoRV GATATC 2 cut(s) 1585, 2055
EcoT14I CCWWGG 3 cut(s) 2322, 2484, 2534
EcoT22I ATGCAT 1 cut(s) 3017
ErhI CCWWGG 3 cut(s) 2322, 2484, 2534
FalI AAGNNNNNCTT 2 cut(s) 2991, 3023
FaqI GGGAC 4 cut(s) 230, 550, 607, 1011
FbaI TGATCA 2 cut(s) 1636, 3067
Fnu4HI GCNGC 9 cut(s) 183, 555, 1014, 1206, 1218, 2481, 2752, 2773, 2847
FokI GGATG 6 cut(s) 296, 367, 817, 1548, 2342, 2945
Fsp4HI GCNGC 9 cut(s) 183, 555, 1014, 1206, 1218, 2481, 2752, 2773, 2847
FspBI CTAG 5 cut(s) 710, 1301, 1694, 1967, 2186
GlaI GCGC 2 cut(s) 292, 1241
GluI GCNGC 9 cut(s) 183, 555, 1014, 1206, 1218, 2481, 2752, 2773, 2847
GsaI CCCAGC 3 cut(s) 30, 1282, 3105
GsuI CTGGAG 2 cut(s) 986, 2904
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 7 cut(s) 153, 256, 1125, 1441, 1654, 2803, 2973
HapII CCGG 6 cut(s) 41, 135, 988, 2077, 2395, 2850
HhaI GCGC 2 cut(s) 293, 1242
Hin6I GCGC 2 cut(s) 291, 1240
HinP1I GCGC 2 cut(s) 291, 1240
HindIII AAGCTT 1 cut(s) 317
HpaII CCGG 6 cut(s) 41, 135, 988, 2077, 2395, 2850
HphI GGTGA 8 cut(s) 43, 1081, 1412, 1778, 2633, 2801, 2873, 3116
Hpy166II GTNNAC 6 cut(s) 1427, 1516, 1688, 1780, 1879, 2652
Hpy8I GTNNAC 6 cut(s) 1427, 1516, 1688, 1780, 1879, 2652
Hpy99I CGWCG 3 cut(s) 75, 262, 265
HpyAV CCTTC 5 cut(s) 523, 707, 1428, 1635, 2625
HpyCH4III ACNGT 9 cut(s) 144, 482, 684, 847, 1741, 1859, 2269, 2647, 2839
HpyCH4IV ACGT 1 cut(s) 2657
HpyF3I CTNAG 8 cut(s) 294, 434, 993, 1668, 1706, 1842, 2273, 2519
HpySE526I ACGT 1 cut(s) 2657
HspAI GCGC 2 cut(s) 291, 1240
KpnI GGTACC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 2849
KroNI GCCGGC 1 cut(s) 2851
Ksp22I TGATCA 2 cut(s) 1636, 3067
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 1406
Lsp1109I GCAGC 8 cut(s) 169, 541, 1000, 1217, 2492, 2738, 2759, 2833
MaeI CTAG 5 cut(s) 710, 1301, 1694, 1967, 2186
MaeII ACGT 1 cut(s) 2657
MaeIII GTNAC 6 cut(s) 271, 977, 1525, 2865, 2887, 3122
MfeI CAATTG 4 cut(s) 1056, 1377, 2439, 3131
MflI RGATCY 6 cut(s) 603, 1480, 1663, 1926, 2018, 2561
MhlI GDGCHC 6 cut(s) 1690, 1881, 2185, 2253, 2263, 2671
MlsI TGGCCA 3 cut(s) 153, 1125, 1441
MluNI TGGCCA 3 cut(s) 153, 1125, 1441
MlyI GAGTC 8 cut(s) 229, 332, 386, 432, 476, 937, 1277, 2095
MmeI TCCRAC 1 cut(s) 510
Mox20I TGGCCA 3 cut(s) 153, 1125, 1441
Mph1103I ATGCAT 1 cut(s) 3017
MroNI GCCGGC 1 cut(s) 2849
MroXI GAANNNNTTC 4 cut(s) 460, 1646, 2351, 3003
MscI TGGCCA 3 cut(s) 153, 1125, 1441
MseI TTAA 7 cut(s) 204, 819, 1235, 2412, 2702, 2714, 2720
MslI CAYNNNNRTG 7 cut(s) 685, 768, 1401, 1785, 2556, 2600, 2817
Msp20I TGGCCA 3 cut(s) 153, 1125, 1441
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 6 cut(s) 41, 135, 988, 2077, 2395, 2850
MspR9I CCNGG 8 cut(s) 41, 136, 562, 1067, 1431, 2787, 2883, 2917
MunI CAATTG 4 cut(s) 1056, 1377, 2439, 3131
Mva1269I GAATGC 1 cut(s) 2428
MvaI CCWGG 6 cut(s) 562, 1067, 1431, 2787, 2883, 2917
NaeI GCCGGC 1 cut(s) 2851
NciI CCSGG 2 cut(s) 41, 136
NgoMIV GCCGGC 1 cut(s) 2849
NmeAIII GCCGAG 1 cut(s) 1204
NmuCI GTSAC 1 cut(s) 3122
NsiI ATGCAT 1 cut(s) 3017
NspI RCATGY 7 cut(s) 887, 978, 1246, 1786, 1916, 2594, 3019
NspV TTCGAA 1 cut(s) 9
PaeI GCATGC 3 cut(s) 1246, 2594, 3019
PaeR7I CTCGAG 1 cut(s) 1530
PagI TCATGA 1 cut(s) 1755
PceI AGGCCT 1 cut(s) 1654
PciI ACATGT 1 cut(s) 1782
PciSI GCTCTTC 1 cut(s) 405
PctI GAATGC 1 cut(s) 2428
PdiI GCCGGC 1 cut(s) 2851
PdmI GAANNNNTTC 4 cut(s) 460, 1646, 2351, 3003
PfeI GAWTC 7 cut(s) 412, 446, 920, 1316, 1567, 1675, 2309
PflMI CCANNNNNTGG 3 cut(s) 788, 1397, 2792
PinAI ACCGGT 1 cut(s) 2076
PkrI GCNGC 9 cut(s) 184, 556, 1015, 1207, 1219, 2482, 2753, 2774, 2848
PleI GAGTC 8 cut(s) 229, 332, 386, 432, 475, 937, 1276, 2094
PpsI GAGTC 8 cut(s) 229, 332, 386, 432, 475, 937, 1276, 2094
PscI ACATGT 1 cut(s) 1782
PshBI ATTAAT 1 cut(s) 2714
Psp1406I AACGTT 1 cut(s) 2657
Psp6I CCWGG 6 cut(s) 560, 1065, 1429, 2785, 2881, 2915
PspFI CCCAGC 3 cut(s) 26, 1278, 3101
PspGI CCWGG 6 cut(s) 560, 1065, 1429, 2785, 2881, 2915
PspPI GGNCC 7 cut(s) 564, 594, 1427, 1513, 1600, 2801, 2971
PspXI VCTCGAGB 1 cut(s) 1530
PsrI GAACNNNNNNTAC 2 cut(s) 820, 852
PstI CTGCAG 2 cut(s) 1372, 2248
PsuI RGATCY 6 cut(s) 603, 1480, 1663, 1926, 2018, 2561
RsaI GTAC 8 cut(s) 479, 578, 838, 1779, 2190, 2271, 2653, 2836
RsaNI GTAC 8 cut(s) 478, 577, 837, 1778, 2189, 2270, 2652, 2835
RseI CAYNNNNRTG 7 cut(s) 685, 768, 1401, 1785, 2556, 2600, 2817
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 7 cut(s) 204, 819, 1235, 2412, 2702, 2714, 2720
SatI GCNGC 9 cut(s) 183, 555, 1014, 1206, 1218, 2481, 2752, 2773, 2847
Sau96I GGNCC 7 cut(s) 564, 594, 1427, 1513, 1600, 2801, 2971
ScaI AGTACT 1 cut(s) 2271
SchI GAGTC 8 cut(s) 229, 332, 386, 432, 476, 937, 1277, 2095
ScrFI CCNGG 8 cut(s) 41, 136, 562, 1067, 1431, 2787, 2883, 2917
SduI GDGCHC 6 cut(s) 1690, 1881, 2185, 2253, 2263, 2671
SfcI CTRYAG 3 cut(s) 1368, 1941, 2244
Sfr274I CTCGAG 1 cut(s) 1530
SfuI TTCGAA 1 cut(s) 9
SinI GGWCC 5 cut(s) 564, 594, 1427, 1513, 1600
SlaI CTCGAG 1 cut(s) 1530
SmiMI CAYNNNNRTG 7 cut(s) 685, 768, 1401, 1785, 2556, 2600, 2817
SmlI CTYRAG 2 cut(s) 818, 1530
SmoI CTYRAG 2 cut(s) 818, 1530
SpeI ACTAGT 1 cut(s) 2185
SphI GCATGC 3 cut(s) 1246, 2594, 3019
SseBI AGGCCT 1 cut(s) 1654
SsiI CCGC 4 cut(s) 304, 665, 1217, 2707
SspI AATATT 2 cut(s) 202, 1762
SspMI CTAG 5 cut(s) 710, 1301, 1694, 1967, 2186
StuI AGGCCT 1 cut(s) 1654
StyD4I CCNGG 8 cut(s) 39, 134, 560, 1065, 1429, 2785, 2881, 2915
StyI CCWWGG 3 cut(s) 2322, 2484, 2534
TaaI ACNGT 9 cut(s) 144, 482, 684, 847, 1741, 1859, 2269, 2647, 2839
TaiI ACGT 1 cut(s) 2660
TaqI TCGA 8 cut(s) 9, 36, 98, 441, 1531, 2872, 3010, 3167
TaqII GACCGA 1 cut(s) 611
TatI WGTACW 5 cut(s) 836, 1777, 2188, 2269, 2651
TauI GCSGC 1 cut(s) 1220
TfiI GAWTC 7 cut(s) 412, 446, 920, 1316, 1567, 1675, 2309
Tru1I TTAA 7 cut(s) 204, 819, 1235, 2412, 2702, 2714, 2720
Tru9I TTAA 7 cut(s) 204, 819, 1235, 2412, 2702, 2714, 2720
TscAI CASTG 7 cut(s) 306, 1264, 1372, 1912, 2117, 2226, 2253
TseFI GTSAC 1 cut(s) 3122
TseI GCWGC 8 cut(s) 182, 554, 1013, 1205, 2480, 2751, 2772, 2846
Tsp45I GTSAC 1 cut(s) 3122
TspDTI ATGAA 8 cut(s) 839, 933, 1215, 1487, 1740, 1772, 2490, 3101
TspGWI ACGGA 3 cut(s) 232, 1041, 2671
TspRI CASTG 7 cut(s) 306, 1264, 1372, 1912, 2117, 2226, 2253
Van91I CCANNNNNTGG 3 cut(s) 788, 1397, 2792
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 2 cut(s) 1686, 1877
VpaK11BI GGWCC 5 cut(s) 564, 594, 1427, 1513, 1600
VspI ATTAAT 1 cut(s) 2714
XapI RAATTY 8 cut(s) 94, 121, 212, 792, 1727, 2497, 3140, 3195
XbaI TCTAGA 1 cut(s) 1966
XceI RCATGY 7 cut(s) 887, 978, 1246, 1786, 1916, 2594, 3019
XhoI CTCGAG 1 cut(s) 1530
XmnI GAANNNNTTC 4 cut(s) 460, 1646, 2351, 3003
XspI CTAG 5 cut(s) 710, 1301, 1694, 1967, 2186
ZrmI AGTACT 1 cut(s) 2271
Zsp2I ATGCAT 1 cut(s) 3017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.