Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

3833747 .. 3835889

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTCTACTTTTAATCTTAATGTCCACCACAATGCTACTGAGCATGAATATGGTTCAGCTGTACTGGAGATTGAAACACAAGTACTGCCAAGGGCTGGCGGAGGAGGAGGAGGTGGCGGCGTCCAAAACAACAACCATGCAAATTTGGAGGAGGGTGTGTTGCTGACATGGGAGGACTTGTGGGTGACAGTAGTTTCCAAGAAGAACAGTATTGGTAGCAGCAGCAGATCTATCCTGCAAGGTCTAACTGGTTATGCCAAGCCTGGGGAGCTCTTGGCTATAATGGGTCCTTCTGGCTGTGGCAAGTCCACTCTCCTTGATGCTTTAGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

113

Amino Acids

11.57

Weight (kDa)

5.2

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	80 - 110	5.2e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	2 cut(s)	102, 120
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	66, 87
AfiI	CCNNNNNNNGG	2 cut(s)	98, 267
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	62, 274
AluI	AGCT	2 cut(s)	62, 274
Alw21I	GWGCWC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	222, 225
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	234, 237
BciT130I	CCWGG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	3 cut(s)	121, 223, 226
BlsI	GCNGC	3 cut(s)	122, 224, 227
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	92, 266
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 167, 176, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 267
Bse1I	ACTGG	2 cut(s)	72, 256
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	92, 266
BseLI	CCNNNNNNNGG	2 cut(s)	98, 267
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	72, 256
BseRI	GAGGAG	4 cut(s)	120, 123, 126, 167
BseXI	GCAGC	2 cut(s)	234, 237
BsiHKAI	GWGCWC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	98, 267
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	2 cut(s)	102, 120
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	72, 256
BssECI	CCNNGG	2 cut(s)	92, 266
BssMI	GATC	1 cut(s)	230
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	193, 212
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	234, 237
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	65, 86
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	47, 140, 171
CviJI	RGCY	7 cut(s)	5, 62, 98, 265, 274, 281, 300
CviKI_1	RGCY	7 cut(s)	5, 62, 98, 265, 274, 281, 300
CviQI	GTAC	2 cut(s)	65, 86
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	50, 143, 174
FaiI	YATR	6 cut(s)	48, 54, 141, 172, 258, 284
FatI	CATG	3 cut(s)	46, 139, 170
Fnu4HI	GCNGC	3 cut(s)	121, 223, 226
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	121, 223, 226
GluI	GCNGC	3 cut(s)	121, 223, 226
GsuI	CTGGAG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	50, 143, 174
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	28, 312
Hpy8I	GTNNAC	2 cut(s)	28, 312
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	2 cut(s)	193, 212
HpyCH4V	TGCA	2 cut(s)	143, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	50, 143, 174
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	53, 84, 237, 251, 252, 279, 282
Lsp1109I	GCAGC	2 cut(s)	234, 237
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	7 cut(s)	98, 101, 104, 107, 145, 148, 169
MseI	TTAA	2 cut(s)	15, 21
MslI	CAYNNNNRTG	2 cut(s)	33, 51
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	50, 143, 174
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	122, 224, 227
PpuMI	RGGWCCY	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	66, 87
RsaNI	GTAC	2 cut(s)	65, 86
RseI	CAYNNNNRTG	2 cut(s)	33, 51
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	15, 21
SatI	GCNGC	3 cut(s)	121, 223, 226
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	4 cut(s)	64, 118, 247, 276
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	33, 51
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	2 cut(s)	102, 120
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	193, 212
TasI	AATT	1 cut(s)	145
TatI	WGTACW	2 cut(s)	64, 85
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	15, 21
Tru9I	TTAA	2 cut(s)	15, 21
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	222, 225
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.