Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

24606282 .. 24610710

Gene Structure 4429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGAGTCTTCTTCTCCAGATAACTTTCCAAGATGGGCACCAAGTCCAAGCCCCTCGAGAGTATTACTATCACCTGTGGAAGACACCAAGATCAAGTCGAATGCTGCTCGTGATTCTGCAGAGAATGGCTTATCCTTATCATGTTCTAGCATGGAAAGGATTTTCCCATTTAGCATTGGATTCAAAAGCACTGCTACTACTAGTACTGCTTATGCTTCTGCGGTTGAAAAGTTACTAGAAGCTGAATGTGCTTACGTTAAAAGCAGTGGTACTACTGATATTGAAATTGCATCAAGAAAGAAAGGTATTTCTTTGACATGGGAGGACTTGTGGGTTGGAGTAGCAGATCGGAAAAGGGAGCAGCGAATGATTTTGCAGAAGCTTACCGGGTTTGCTCAACCTGGTGAGGTTTTGGCTATTATGGGTCCTTCTGGCTGTGGCAAATCAACCCTTTTGGATGCTTTAGCAGGAAGGCTAAGTTCAAGCACACAGCACAGAGGGAAGATCCTAATCAATGGCCGGAAAGAAACACTTGCCTACGGGCTACGGAACCTCGTGACACGCTATTGTTCTTTCTGGTATTCAGACAACAGTCATGCATATGTGACTCAAGATGACACACTAATGACAACATTAACAGTAAGGGAAGTTGTGTATTACTCGGCGCAGCTCCAACTACCTAACGCCATGTCAAAAGCAGAAAAGAAGGAAAGAGCTGAGACAACAATAAGGGAGATGAGCTTGCAAGACTCCATGAACACAAGAATTGGAGGTTGGAGTAAAAAAGGCCTCAGTGGTGGGCAAAAGAGAAGAGTCAGCATCTGCGTTGAAATCTTAACTCGTCCAAAGCTTCTATTCCTTGATGAGCCTACTAGTGGACTAGACAGTGCAGCATCTTACCATGTCATGAACCGCATTATTAAACTGGCTCACCGCGATGGAACGACAGTTATTGCATCAATTCATCAACCAAGCGGTGAAGTTTTTGAGCTTTTCCAAAATCTTTGCCTTCTCTCCTCTGGTAGAACAGTCTATTTTGGCCCTGCTTCACAGGCAGAACAGTTTTTTGCTTCAAATGGCTTCCCGTGTCCAACGCTGAGAAACCCATCAGATCACTACCTTAGGACTATCAACAAGGACTTTGATGTTAAAGGTGGAGCTCTAGAGAAGGGAAGCCAGGCCAACTTCATAACTCAATGCCTAGTTCTGACAAGGAGATCATTTGTGAACATGTATCGCGATCTAGGCTACTACTGGCTTCGTCTTGCAATTTACATTTCCTTGTGCTTATGTGCAGGGACTATTTTTCATCACATTGGCTCCAATTTTGGCTCAATACAGGTAATTAATATGCTGAAGATATCAGTGACATATTTGTCTAGTAAGCCACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

464

Amino Acids

51.38

Weight (kDa)

9.21

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	130 - 292	6.4e-28	ABC transporter
ABC2_membrane_7	PF19055	322 - 376	5.5e-09	ABC-2 type transporter
ABC2_membrane	PF01061	398 - 460	6.9e-06	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	2 cut(s)	936, 1239
AciI	CCGC	4 cut(s)	221, 913, 934, 975
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	1376
AfaI	GTAC	2 cut(s)	205, 271
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	1230
AgsI	TTSAA	6 cut(s)	184, 227, 284, 483, 830, 1074
AhlI	ACTAGT	2 cut(s)	200, 872
AjnI	CCWGG	2 cut(s)	400, 1176
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
AluBI	AGCT	8 cut(s)	242, 382, 670, 716, 741, 850, 991, 1160
AluI	AGCT	8 cut(s)	242, 382, 670, 716, 741, 850, 991, 1160
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	822
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	4 cut(s)	517, 787, 1039, 1179
ApeKI	GCWGC	4 cut(s)	104, 361, 667, 890
AseI	ATTAAT	1 cut(s)	1347
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	2 cut(s)	425, 1040
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	4 cut(s)	63, 416, 923, 989
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	1121
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	1162
BauI	CACGAG	2 cut(s)	108, 554
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	4 cut(s)	91, 373, 679, 902
BccI	CCATC	3 cut(s)	27, 932, 1114
BciT130I	CCWGG	2 cut(s)	402, 1178
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	713
BcuI	ACTAGT	2 cut(s)	200, 872
BfaI	CTAG	9 cut(s)	147, 201, 236, 873, 881, 1163, 1202, 1244, 1380
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	105, 362, 668, 891
BlsI	GCNGC	4 cut(s)	106, 363, 669, 892
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	388, 402, 1178
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	425, 1040
BmiI	GGNNCC	4 cut(s)	39, 426, 551, 1321
BmrFI	CCNGG	3 cut(s)	388, 402, 1178
BmsI	GCATC	5 cut(s)	299, 448, 828, 902, 965
BoxI	GACNNNNGTC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 1304, 1334
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	930, 1259
Bse21I	CCTNAGG	1 cut(s)	1121
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	2 cut(s)	402, 1178
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMII	CTCAG	3 cut(s)	708, 805, 1088
BseNI	ACTGG	2 cut(s)	930, 1259
BseRI	GAGGAG	1 cut(s)	1006
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	91, 373, 679, 902
BsgI	GTGCAG	2 cut(s)	909, 1314
Bsh1236I	CGCG	2 cut(s)	936, 1239
BshFI	GGCC	4 cut(s)	519, 789, 1041, 1181
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	387, 520
BslFI	GGGAC	1 cut(s)	1312
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	1312
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	4 cut(s)	519, 789, 1041, 1181
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	40, 1162
Bsp143I	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
Bsp68I	TCGCGA	1 cut(s)	1239
BspACI	CCGC	4 cut(s)	221, 913, 934, 975
BspANI	GGCC	4 cut(s)	519, 789, 1041, 1181
BspCNI	CTCAG	3 cut(s)	709, 804, 1089
BspFNI	CGCG	2 cut(s)	936, 1239
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	39, 426, 551, 1321
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	930, 1259
BssMI	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
BssSI	CACGAG	2 cut(s)	108, 554
Bst2BI	CACGAG	2 cut(s)	108, 554
Bst2UI	CCWGG	2 cut(s)	402, 1178
Bst4CI	ACNGT	6 cut(s)	593, 640, 887, 949, 1030, 1062
Bst6I	CTCTTC	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	476, 717, 791, 1097, 1121
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	2 cut(s)	936, 1239
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	6 cut(s)	93, 349, 507, 1114, 1220, 1243
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 1052, 1245
BstNI	CCWGG	2 cut(s)	402, 1178
BstNSI	RCATGY	1 cut(s)	1234
BstPAI	GACNNNNGTC	1 cut(s)	591
BstSCI	CCNGG	3 cut(s)	386, 400, 1176
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	936, 1239
BstV1I	GCAGC	4 cut(s)	91, 373, 679, 902
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	1121
BsuRI	GGCC	4 cut(s)	519, 789, 1041, 1181
BtgZI	GCGATG	1 cut(s)	951
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	2 cut(s)	189, 271
BtsIMutI	CAGTG	5 cut(s)	189, 271, 799, 892, 1371
BtuMI	TCGCGA	1 cut(s)	1239
Cac8I	GCNNGC	1 cut(s)	743
CaiI	CAGNNNCTG	1 cut(s)	822
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	425, 1040
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	204, 270
CviAII	CATG	9 cut(s)	141, 151, 318, 596, 688, 754, 902, 907, 1231
CviQI	GTAC	2 cut(s)	204, 270
DdeI	CTNAG	5 cut(s)	476, 717, 791, 1097, 1121
DpnI	GATC	6 cut(s)	92, 348, 506, 1113, 1219, 1242
DpnII	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
DrdI	GACNNNNNNGTC	1 cut(s)	1375
DseDI	GACNNNNNNGTC	1 cut(s)	1375
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	805
EarI	CTCTTC	1 cut(s)	805
Ecl136II	GAGCTC	1 cut(s)	1160
Eco147I	AGGCCT	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	1162
Eco32I	GATATC	1 cut(s)	1362
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	1160
Eco57I	CTGAAG	1 cut(s)	1376
Eco81I	CCTNAGG	1 cut(s)	1121
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	1160
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	400, 1176
EcoRV	GATATC	1 cut(s)	1362
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	1162
FaeI	CATG	9 cut(s)	144, 154, 321, 599, 691, 757, 905, 910, 1234
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	1312
FatI	CATG	9 cut(s)	140, 150, 317, 595, 687, 753, 901, 906, 1230
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	105, 362, 668, 891
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	1162
Fsp4HI	GCNGC	4 cut(s)	105, 362, 668, 891
FspBI	CTAG	9 cut(s)	147, 201, 236, 873, 881, 1163, 1202, 1244, 1380
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	4 cut(s)	105, 362, 668, 891
HaeIII	GGCC	4 cut(s)	519, 789, 1041, 1181
HapII	CCGG	2 cut(s)	387, 520
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	9 cut(s)	144, 154, 321, 599, 691, 757, 905, 910, 1234
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	2 cut(s)	380, 848
HinfI	GANTC	6 cut(s)	5, 113, 180, 607, 749, 813
HpaII	CCGG	2 cut(s)	387, 520
HphI	GGTGA	4 cut(s)	63, 416, 923, 989
Hpy166II	GTNNAC	2 cut(s)	878, 1228
Hpy188I	TCNGA	4 cut(s)	351, 586, 1111, 1209
Hpy188III	TCNNGA	9 cut(s)	17, 57, 110, 294, 556, 611, 907, 1163, 1238
Hpy8I	GTNNAC	2 cut(s)	878, 1228
HpyAV	CCTTC	5 cut(s)	438, 465, 700, 1019, 1162
HpyCH4III	ACNGT	6 cut(s)	593, 640, 887, 949, 1030, 1062
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	9 cut(s)	119, 290, 376, 599, 745, 890, 956, 1268, 1295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 1052, 1245
HpyF3I	CTNAG	5 cut(s)	476, 717, 791, 1097, 1121
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	9 cut(s)	144, 154, 321, 599, 691, 757, 905, 910, 1234
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
LmnI	GCTCC	4 cut(s)	358, 675, 1157, 1325
Lsp1109I	GCAGC	4 cut(s)	91, 373, 679, 902
LweI	GCATC	5 cut(s)	299, 448, 828, 902, 965
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	9 cut(s)	147, 201, 236, 873, 881, 1163, 1202, 1244, 1380
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	231, 556, 604, 1366
MalI	GATC	6 cut(s)	92, 348, 506, 1113, 1219, 1242
MboI	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
MboII	GAAGA	5 cut(s)	3, 92, 514, 822, 1369
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	40, 1162
MluCI	AATT	6 cut(s)	285, 765, 960, 1269, 1324, 1344
MlyI	GAGTC	4 cut(s)	14, 601, 743, 822
MmeI	TCCRAC	4 cut(s)	316, 697, 755, 1115
MnlI	CCTC	8 cut(s)	64, 316, 400, 491, 563, 764, 800, 1027
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	6 cut(s)	258, 635, 836, 921, 1149, 1347
MslI	CAYNNNNRTG	3 cut(s)	600, 623, 936
MspI	CCGG	2 cut(s)	387, 520
MspR9I	CCNGG	3 cut(s)	388, 402, 1178
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	402, 1178
MvnI	CGCG	2 cut(s)	936, 1239
MwoI	GCNNNNNNNGC	3 cut(s)	248, 1052, 1245
NciI	CCSGG	1 cut(s)	388
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
NlaIII	CATG	9 cut(s)	144, 154, 321, 599, 691, 757, 905, 910, 1234
NlaIV	GGNNCC	4 cut(s)	39, 426, 551, 1321
NmeAIII	GCCGAG	1 cut(s)	641
NmuCI	GTSAC	3 cut(s)	556, 604, 1366
NruI	TCGCGA	1 cut(s)	1239
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	1234
PaeR7I	CTCGAG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	789
PciI	ACATGT	1 cut(s)	1230
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	113, 180
PkrI	GCNGC	4 cut(s)	106, 363, 669, 892
PleI	GAGTC	4 cut(s)	13, 601, 743, 821
PpsI	GAGTC	4 cut(s)	13, 601, 743, 821
PpuMI	RGGWCCY	1 cut(s)	425
PscI	ACATGT	1 cut(s)	1230
PshAI	GACNNNNGTC	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	1347
Psp124BI	GAGCTC	1 cut(s)	1162
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	400, 1176
PspGI	CCWGG	2 cut(s)	400, 1176
PspN4I	GGNNCC	4 cut(s)	39, 426, 551, 1321
PspPI	GGNCC	2 cut(s)	425, 1040
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	822
PsuI	RGATCY	1 cut(s)	504
RruI	TCGCGA	1 cut(s)	1239
RsaI	GTAC	2 cut(s)	205, 271
RsaNI	GTAC	2 cut(s)	204, 270
RseI	CAYNNNNRTG	3 cut(s)	600, 623, 936
SacI	GAGCTC	1 cut(s)	1162
SaqAI	TTAA	6 cut(s)	258, 635, 836, 921, 1149, 1347
SatI	GCNGC	4 cut(s)	105, 362, 668, 891
Sau3AI	GATC	6 cut(s)	90, 346, 504, 1111, 1217, 1240
Sau96I	GGNCC	2 cut(s)	425, 1040
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	4 cut(s)	14, 601, 743, 822
ScrFI	CCNGG	3 cut(s)	388, 402, 1178
SduI	GDGCHC	2 cut(s)	40, 1162
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	5 cut(s)	299, 448, 828, 902, 965
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	600, 623, 936
SmlI	CTYRAG	2 cut(s)	55, 609
SmoI	CTYRAG	2 cut(s)	55, 609
SpeI	ACTAGT	2 cut(s)	200, 872
Sse9I	AATT	6 cut(s)	285, 765, 960, 1269, 1324, 1344
SseBI	AGGCCT	1 cut(s)	789
SsiI	CCGC	4 cut(s)	221, 913, 934, 975
SspMI	CTAG	9 cut(s)	147, 201, 236, 873, 881, 1163, 1202, 1244, 1380
SstI	GAGCTC	1 cut(s)	1162
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	386, 400, 1176
TaaI	ACNGT	6 cut(s)	593, 640, 887, 949, 1030, 1062
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	56, 98
TasI	AATT	6 cut(s)	285, 765, 960, 1269, 1324, 1344
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	113, 180
Tru1I	TTAA	6 cut(s)	258, 635, 836, 921, 1149, 1347
Tru9I	TTAA	6 cut(s)	258, 635, 836, 921, 1149, 1347
TscAI	CASTG	5 cut(s)	196, 271, 799, 892, 1371
TseFI	GTSAC	3 cut(s)	556, 604, 1366
TseI	GCWGC	4 cut(s)	104, 361, 667, 890
Tsp45I	GTSAC	3 cut(s)	556, 604, 1366
TspDTI	ATGAA	5 cut(s)	770, 923, 953, 1177, 1298
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	5 cut(s)	196, 271, 799, 892, 1371
VpaK11BI	GGWCC	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	1347
XbaI	TCTAGA	1 cut(s)	1162
XceI	RCATGY	1 cut(s)	1234
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	9 cut(s)	147, 201, 236, 873, 881, 1163, 1202, 1244, 1380
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.