Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

66851268 .. 66856664

Gene Structure 5397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGGCTTCTGGTAGATTCCATTCAAATGTCCGTCGACACATCGATGCTACGTTTGAAAATGAATATGGTTACCACACCAGGAATCCCACAGGATTACTGGAGATTGAAACAGATGCTAGAGGAGCTTCCATCCTGGAGATTGAAACAGTTGCTGGAGGAGCTTCATTCCGAAACCAAAACCGAAACCATGCAGTTCCATTAACTGTAATTGATGAGGGTGTTTCCTTGACATGGCAAGATTTGTGGGTGAGAGTAGAAGGAAGAAGCTGTAGACCAATCCTCCAAGGGCTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGACTCAGTTCAAACACAAGGCAAACAGGGGAGATCCTAATCAATGGACATAAACAAGCACTGGCTTATGGAACTTCTGCATATGTGACACAAGATGATACTCTAATCACAACATTAACAGTCGAAGAAGCCGTCTACTACTCAGCTCAGCTGCAATTACCAGACTCCATGTCCAAGTCGGAAAAGAAAGAGAGAGCACAGGTAACGATAAGAGAGATGGGTTTGCAAGAAGCCATGAACACGAGGATCGGAGGTTGGGGAGCCAAAGGCCTCAGTGGCGGCCAAAAGAGAAGAGTCAGCATTTGCATTGAGCTTCTTACGCGACCAAAGCTTCTCTTCTTGGACGAGCCAACAAGTGGGCTTGACAGCGCGGCGTCTTATTATGTGATGAGCCGAATTGCAAATCTTGGTTGTCAAAAATCCTCGCCGAGGACTATTGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCGGGTAGAACTGTGTATTTCGGTCCTGCTTCTGCAGCCAATGAGTTTTTTGCTTCAAGTGGTTTCCCATGCCCAACTCTTCAAAATCCATCAGATCACTTCCTCAAGACCATAAACAAAGATTTTGAGCAGGACATTGAGAAAGGCATAGCTGGAACCACACCCACAGAGGAAGCCATTGATACTCTAATAAAGTCTTACAAATCATCTGAAAATTATCACCAACTTCAAAGACATATAGCTGAACTACATAAGAAGGATTGTGAAGCATTGGAAAGGAGAAGCCATGCTGGCTTTCTTACACAATCTTTCGTGCTTACAAGAAGATCGTTCGTGAACATGTATCGAGATCGAGGCTACTACTGGTTGCGCCTTGTTATCTACACCGGCATATCTGTAGGCTTAGGCGTTGTCTATCATGGTCTTGGACATACTTATGGATCAATCCAGGCAAGAGGCTCGATGCTCTCGTTTATAGCTACATTTTTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGGTATTTGAACGCGAGAGACTAAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGGCAACACATTTTCCTCGGTCCCTTTCTTGATGTTAATTTCACTGATTCCTGGAGCAACAGCATATTACCTTGCCGGACTTCACAGTGGATTCGAACACTTCTTCTACTTTGCTTCTGCACTATTTGCTTGCATAATGCTGGTTGAGAGCCTAATGATGATAATTGCGAGCATCGTGCCAAACTACCTGATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGTAATGATTTTATGCGGTGGATTCTTCCAGCTGCCAAATGATCTCCCGGATGTTTTGTTCAAGTACCCATTATATCACATTGCTTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTTCAAGAACAAGATTTCCAAACGACAATCATCTCGGAATGAGTTCCTCTAAATGGCTCAGTGGTGAACGCATTTTGAAAGATAAATGGCAGGTGGAAATGGGTTACTCCAAATGGGTTAATCTTGCTATCTTGTTAGGAATGGTAGTTCTGTATCGAATTTTGTTCTTCGTTATCATCAAGACCACTGAGAAAGTGAAGACTATTACCTCAGCTCTTCTGGCCGTGGCTCCCAAGCGAAGCATGCAAGTACTGGTGAATCCCTCCTCTACTCCACTGCATGGAGAGTGTTCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

705

Amino Acids

78.23

Weight (kDa)

8.78

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	94 - 245	1.1e-28	ABC transporter
ABC2_membrane_7	PF19055	277 - 332	1.2e-09	ABC-2 type transporter
ABC2_membrane	PF01061	395 - 607	3.2e-39	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1900
Acc36I	ACCTGC	1 cut(s)	1900
AccB7I	CCANNNNNTGG	2 cut(s)	734, 2099
AccI	GTMKAC	4 cut(s)	34, 271, 353, 513
AccII	CGCG	3 cut(s)	700, 749, 1431
AciI	CCGC	3 cut(s)	657, 749, 1710
AclWI	GGATC	3 cut(s)	406, 632, 1330
AcoI	YGGCCR	3 cut(s)	658, 1380, 2040
AcsI	RAATTY	2 cut(s)	1817, 1977
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	752
AfaI	GTAC	2 cut(s)	1760, 2070
AfiI	CCNNNNNNNGG	7 cut(s)	231, 309, 734, 807, 1389, 1872, 2099
AflIII	ACRYGT	1 cut(s)	1221
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	6 cut(s)	77, 132, 307, 1329, 1522, 1797
AleI	CACNNNNGTG	1 cut(s)	1452
AloI	GAACNNNNNNTCC	8 cut(s)	370, 402, 1736, 1768, 1819, 1851, 1950, 1982
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	2 cut(s)	373, 1429
AlwI	GGATC	3 cut(s)	406, 632, 1330
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	646, 658, 1380, 2040
ApeKI	GCWGC	3 cut(s)	529, 917, 1726
ApoI	RAATTY	2 cut(s)	1817, 1977
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
Asp700I	GAANNNNTTC	2 cut(s)	849, 1861
AspLEI	GCGC	2 cut(s)	749, 1254
AspS9I	GGNCC	3 cut(s)	332, 905, 1492
AsuC2I	CCSGG	1 cut(s)	1742
AsuHPI	GGTGA	4 cut(s)	259, 1094, 1895, 2086
AsuII	TTCGAA	2 cut(s)	1566, 2111
AvaII	GGWCC	3 cut(s)	332, 905, 1492
BaeGI	GKGCMC	1 cut(s)	1449
BalI	TGGCCA	1 cut(s)	1382
BauI	CACGAG	1 cut(s)	619
BbsI	GAAGAC	4 cut(s)	866, 873, 1416, 2024
Bbv12I	GWGCWC	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	2029
BbvI	GCAGC	3 cut(s)	516, 929, 1713
BccI	CCATC	6 cut(s)	137, 589, 833, 837, 979, 1657
BceAI	ACGGC	2 cut(s)	494, 2027
BcgI	CGANNNNNNTGC	4 cut(s)	1323, 1357, 1630, 1664
BciT130I	CCWGG	6 cut(s)	79, 134, 309, 1331, 1524, 1799
BcnI	CCSGG	1 cut(s)	1742
BcoDI	GTCTC	2 cut(s)	373, 1429
BfaI	CTAG	2 cut(s)	117, 837
BfmI	CTRYAG	3 cut(s)	268, 915, 1278
BfuAI	ACCTGC	1 cut(s)	1900
BglI	GCCNNNNNGGC	2 cut(s)	654, 1173
BisI	GCNGC	5 cut(s)	530, 658, 750, 918, 1727
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	5 cut(s)	531, 659, 751, 919, 1728
BmcAI	AGTACT	1 cut(s)	2070
Bme1390I	CCNGG	7 cut(s)	79, 134, 309, 1331, 1524, 1742, 1799
Bme18I	GGWCC	3 cut(s)	332, 905, 1492
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	332, 905, 1492
BmiI	GGNNCC	5 cut(s)	333, 640, 1039, 1494, 2049
BmrFI	CCNGG	7 cut(s)	79, 134, 309, 1331, 1524, 1742, 1799
BmsI	GCATC	5 cut(s)	34, 103, 355, 1335, 1653
BpiI	GAAGAC	4 cut(s)	866, 873, 1416, 2024
BpmI	CTGGAG	4 cut(s)	119, 155, 174, 1545
Bpu10I	CCTNAGC	2 cut(s)	1285, 2029
Bpu1102I	GCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	2 cut(s)	1566, 2111
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	1742
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	752
BsaJI	CCNNGG	7 cut(s)	283, 308, 806, 1488, 1690, 1798, 2043
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 370, 400
Bsc4I	CCNNNNNNNGG	7 cut(s)	231, 309, 734, 807, 1389, 1872, 2099
Bse118I	RCCGGY	1 cut(s)	1268
Bse1I	ACTGG	5 cut(s)	102, 298, 444, 1250, 2076
Bse3DI	GCAATG	1 cut(s)	1773
Bse8I	GATNNNNATC	1 cut(s)	416
BseBI	CCWGG	6 cut(s)	79, 134, 309, 1331, 1524, 1799
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	7 cut(s)	283, 308, 806, 1488, 1690, 1798, 2043
BseGI	GGATG	3 cut(s)	129, 825, 1750
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	7 cut(s)	231, 309, 734, 807, 1389, 1872, 2099
BseMI	GCAATG	1 cut(s)	1773
BseMII	CTCAG	7 cut(s)	397, 534, 539, 664, 1891, 1998, 2043
BseNI	ACTGG	5 cut(s)	102, 298, 444, 1250, 2076
BseRI	GAGGAG	3 cut(s)	135, 171, 2074
BseSI	GKGCMC	1 cut(s)	1449
BseXI	GCAGC	3 cut(s)	516, 929, 1713
BsgI	GTGCAG	1 cut(s)	1575
Bsh1236I	CGCG	3 cut(s)	700, 749, 1431
BshFI	GGCC	4 cut(s)	648, 660, 1382, 2042
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	1269, 1548, 1742
BslFI	GGGAC	1 cut(s)	1478
BslI	CCNNNNNNNGG	7 cut(s)	231, 309, 734, 807, 1389, 1872, 2099
BsmAI	GTCTC	2 cut(s)	373, 1429
BsmFI	GGGAC	1 cut(s)	1478
BsmI	GAATGC	1 cut(s)	1793
BsnI	GGCC	4 cut(s)	648, 660, 1382, 2042
Bsp119I	TTCGAA	2 cut(s)	1566, 2111
Bsp1286I	GDGCHC	2 cut(s)	577, 1449
Bsp143I	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	3 cut(s)	657, 749, 1710
BspANI	GGCC	4 cut(s)	648, 660, 1382, 2042
BspCNI	CTCAG	7 cut(s)	396, 533, 538, 663, 1890, 1999, 2042
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	3 cut(s)	700, 749, 1431
BspLI	GGNNCC	5 cut(s)	333, 640, 1039, 1494, 2049
BspMAI	CTGCAG	1 cut(s)	919
BspMI	ACCTGC	1 cut(s)	1900
BspPI	GGATC	3 cut(s)	406, 632, 1330
BspQI	GCTCTTC	1 cut(s)	2040
BspT104I	TTCGAA	2 cut(s)	1566, 2111
BsrDI	GCAATG	1 cut(s)	1773
BsrFI	RCCGGY	1 cut(s)	1268
BsrI	ACTGG	5 cut(s)	102, 298, 444, 1250, 2076
BssAI	RCCGGY	1 cut(s)	1268
BssECI	CCNNGG	7 cut(s)	283, 308, 806, 1488, 1690, 1798, 2043
BssMI	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
BssNI	GRCGYC	1 cut(s)	752
BssSI	CACGAG	1 cut(s)	619
BssT1I	CCWWGG	2 cut(s)	283, 1690
Bst2BI	CACGAG	1 cut(s)	619
Bst2UI	CCWGG	6 cut(s)	79, 134, 309, 1331, 1524, 1799
Bst4CI	ACNGT	5 cut(s)	148, 205, 499, 895, 1559
Bst6I	CTCTTC	5 cut(s)	363, 664, 719, 966, 2040
BstACI	GRCGYC	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	1598
BstBI	TTCGAA	2 cut(s)	1566, 2111
BstC8I	GCNNGC	4 cut(s)	1174, 1603, 1642, 2063
BstDEI	CTNAG	8 cut(s)	383, 520, 525, 650, 1285, 1877, 2007, 2029
BstDSI	CCRYGG	1 cut(s)	2043
BstEII	GGTNACC	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	129, 825, 1750
BstFNI	CGCG	3 cut(s)	700, 749, 1431
BstHHI	GCGC	2 cut(s)	749, 1254
BstKTI	GATC	7 cut(s)	414, 627, 979, 1211, 1234, 1325, 1738
BstMAI	GTCTC	2 cut(s)	373, 1429
BstMBI	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
BstNI	CCWGG	6 cut(s)	79, 134, 309, 1331, 1524, 1799
BstNSI	RCATGY	2 cut(s)	1225, 2065
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	7 cut(s)	77, 132, 307, 1329, 1522, 1740, 1797
BstSFI	CTRYAG	3 cut(s)	268, 915, 1278
BstSLI	GKGCMC	1 cut(s)	1449
BstUI	CGCG	3 cut(s)	700, 749, 1431
BstV1I	GCAGC	3 cut(s)	516, 929, 1713
BstV2I	GAAGAC	4 cut(s)	866, 873, 1416, 2024
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	648, 660, 1382, 2042
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	2043
BtsCI	GGATG	3 cut(s)	129, 825, 1750
BtsI	GCAGTG	1 cut(s)	2093
BtsIMutI	CAGTG	7 cut(s)	437, 658, 1514, 1564, 1885, 2004, 2093
BveI	ACCTGC	1 cut(s)	1900
Cac8I	GCNNGC	4 cut(s)	1174, 1603, 1642, 2063
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	2 cut(s)	749, 1254
Cfr10I	RCCGGY	1 cut(s)	1268
Cfr13I	GGNCC	3 cut(s)	332, 905, 1492
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	1759, 2069
CspCI	CAANNNNNGTGG	2 cut(s)	224, 259
CviQI	GTAC	2 cut(s)	1759, 2069
DdeI	CTNAG	8 cut(s)	383, 520, 525, 650, 1285, 1877, 2007, 2029
DpnI	GATC	7 cut(s)	413, 626, 978, 1210, 1233, 1324, 1737
DpnII	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
DriI	GACNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	3 cut(s)	658, 1380, 2040
Eam1104I	CTCTTC	5 cut(s)	363, 664, 719, 966, 2040
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	5 cut(s)	363, 664, 719, 966, 2040
Eco130I	CCWWGG	2 cut(s)	283, 1690
Eco147I	AGGCCT	1 cut(s)	648
Eco47I	GGWCC	3 cut(s)	332, 905, 1492
Eco57I	CTGAAG	1 cut(s)	864
Eco91I	GGTNACC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	6 cut(s)	77, 132, 307, 1329, 1522, 1797
EcoT14I	CCWWGG	2 cut(s)	283, 1690
EcoT22I	ATGCAT	1 cut(s)	1795
ErhI	CCWWGG	2 cut(s)	283, 1690
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	1478
FauNDI	CATATG	1 cut(s)	460
FblI	GTMKAC	4 cut(s)	34, 271, 353, 513
Fnu4HI	GCNGC	5 cut(s)	530, 658, 750, 918, 1727
FokI	GGATG	3 cut(s)	116, 812, 1757
Fsp4HI	GCNGC	5 cut(s)	530, 658, 750, 918, 1727
FspBI	CTAG	2 cut(s)	117, 837
GlaI	GCGC	2 cut(s)	748, 1253
GluI	GCNGC	5 cut(s)	530, 658, 750, 918, 1727
GsuI	CTGGAG	4 cut(s)	119, 155, 174, 1545
HaeIII	GGCC	4 cut(s)	648, 660, 1382, 2042
HapII	CCGG	3 cut(s)	1269, 1548, 1742
HgaI	GACGC	1 cut(s)	741
HhaI	GCGC	2 cut(s)	749, 1254
Hin1I	GRCGYC	1 cut(s)	752
Hin6I	GCGC	2 cut(s)	747, 1252
HinP1I	GCGC	2 cut(s)	747, 1252
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	707
HpaII	CCGG	3 cut(s)	1269, 1548, 1742
HphI	GGTGA	4 cut(s)	259, 1094, 1895, 2086
Hpy166II	GTNNAC	6 cut(s)	35, 272, 354, 514, 1219, 1886
Hpy188I	TCNGA	7 cut(s)	170, 559, 629, 844, 976, 1093, 1856
Hpy188III	TCNNGA	7 cut(s)	362, 988, 1216, 1229, 1501, 1824, 1999
Hpy8I	GTNNAC	6 cut(s)	35, 272, 354, 514, 1219, 1886
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	5 cut(s)	251, 345, 1132, 1407, 1411
HpyCH4III	ACNGT	5 cut(s)	148, 205, 499, 895, 1559
HpyCH4IV	ACGT	1 cut(s)	50
HpyF3I	CTNAG	8 cut(s)	383, 520, 525, 650, 1285, 1877, 2007, 2029
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	752
HspAI	GCGC	2 cut(s)	747, 1252
Kzo9I	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
LguI	GCTCTTC	1 cut(s)	2040
LmnI	GCTCC	5 cut(s)	122, 158, 638, 1526, 2053
Lsp1109I	GCAGC	3 cut(s)	516, 929, 1713
LweI	GCATC	5 cut(s)	34, 103, 355, 1335, 1653
MaeI	CTAG	2 cut(s)	117, 837
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	4 cut(s)	68, 463, 580, 1922
MalI	GATC	7 cut(s)	413, 626, 978, 1210, 1233, 1324, 1737
MboI	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	577, 1449
MlsI	TGGCCA	1 cut(s)	1382
MluCI	AATT	8 cut(s)	207, 533, 774, 1096, 1509, 1635, 1817, 1977
MluNI	TGGCCA	1 cut(s)	1382
MlyI	GAGTC	3 cut(s)	375, 536, 681
MmeI	TCCRAC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	1382
Mph1103I	ATGCAT	1 cut(s)	1795
MroXI	GAANNNNTTC	2 cut(s)	849, 1861
MscI	TGGCCA	1 cut(s)	1382
MseI	TTAA	6 cut(s)	200, 494, 1370, 1508, 1809, 1938
MslI	CAYNNNNRTG	5 cut(s)	24, 42, 1317, 1452, 1788
Msp20I	TGGCCA	1 cut(s)	1382
MspA1I	CMGCKG	2 cut(s)	529, 1726
MspI	CCGG	3 cut(s)	1269, 1548, 1742
MspR9I	CCNGG	7 cut(s)	79, 134, 309, 1331, 1524, 1742, 1799
Mva1269I	GAATGC	1 cut(s)	1793
MvaI	CCWGG	6 cut(s)	79, 134, 309, 1331, 1524, 1799
MvnI	CGCG	3 cut(s)	700, 749, 1431
NciI	CCSGG	1 cut(s)	1742
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
NlaIV	GGNNCC	5 cut(s)	333, 640, 1039, 1494, 2049
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	1795
NspI	RCATGY	2 cut(s)	1225, 2065
NspV	TTCGAA	2 cut(s)	1566, 2111
OliI	CACNNNNGTG	1 cut(s)	1452
PaeI	GCATGC	1 cut(s)	2065
PaqCI	CACCTGC	1 cut(s)	1900
PceI	AGGCCT	1 cut(s)	648
PciI	ACATGT	1 cut(s)	1221
PciSI	GCTCTTC	1 cut(s)	2040
PcsI	WCGNNNNNNNCGW	2 cut(s)	507, 1349
PctI	GAATGC	1 cut(s)	1793
PdmI	GAANNNNTTC	2 cut(s)	849, 1861
PfeI	GAWTC	7 cut(s)	15, 82, 1519, 1563, 1686, 1716, 2077
PflMI	CCANNNNNTGG	2 cut(s)	734, 2099
PfoI	TCCNGGA	3 cut(s)	132, 1522, 1740
PkrI	GCNGC	5 cut(s)	531, 659, 751, 919, 1728
PleI	GAGTC	3 cut(s)	375, 536, 680
PpsI	GAGTC	3 cut(s)	375, 536, 680
PpuMI	RGGWCCY	1 cut(s)	332
PscI	ACATGT	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	6 cut(s)	77, 132, 307, 1329, 1522, 1797
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	6 cut(s)	77, 132, 307, 1329, 1522, 1797
PspN4I	GGNNCC	5 cut(s)	333, 640, 1039, 1494, 2049
PspPI	GGNCC	3 cut(s)	332, 905, 1492
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	2 cut(s)	529, 1726
RsaI	GTAC	2 cut(s)	1760, 2070
RsaNI	GTAC	2 cut(s)	1759, 2069
RseI	CAYNNNNRTG	5 cut(s)	24, 42, 1317, 1452, 1788
SalI	GTCGAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	2040
SaqAI	TTAA	6 cut(s)	200, 494, 1370, 1508, 1809, 1938
SatI	GCNGC	5 cut(s)	530, 658, 750, 918, 1727
Sau3AI	GATC	7 cut(s)	411, 624, 976, 1208, 1231, 1322, 1735
Sau96I	GGNCC	3 cut(s)	332, 905, 1492
ScaI	AGTACT	1 cut(s)	2070
SchI	GAGTC	3 cut(s)	375, 536, 681
ScrFI	CCNGG	7 cut(s)	79, 134, 309, 1331, 1524, 1742, 1799
SduI	GDGCHC	2 cut(s)	577, 1449
SfaNI	GCATC	5 cut(s)	34, 103, 355, 1335, 1653
SfcI	CTRYAG	3 cut(s)	268, 915, 1278
SfuI	TTCGAA	2 cut(s)	1566, 2111
SinI	GGWCC	3 cut(s)	332, 905, 1492
SmiMI	CAYNNNNRTG	5 cut(s)	24, 42, 1317, 1452, 1788
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SphI	GCATGC	1 cut(s)	2065
Sse9I	AATT	8 cut(s)	207, 533, 774, 1096, 1509, 1635, 1817, 1977
SseBI	AGGCCT	1 cut(s)	648
SsiI	CCGC	3 cut(s)	657, 749, 1710
SspMI	CTAG	2 cut(s)	117, 837
StuI	AGGCCT	1 cut(s)	648
StyD4I	CCNGG	7 cut(s)	77, 132, 307, 1329, 1522, 1740, 1797
StyI	CCWWGG	2 cut(s)	283, 1690
TaaI	ACNGT	5 cut(s)	148, 205, 499, 895, 1559
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	9 cut(s)	34, 42, 501, 1228, 1234, 1343, 1566, 1975, 2111
TaqII	GACCGA	2 cut(s)	893, 1480
TasI	AATT	8 cut(s)	207, 533, 774, 1096, 1509, 1635, 1817, 1977
TatI	WGTACW	1 cut(s)	2068
TauI	GCSGC	2 cut(s)	660, 752
TfiI	GAWTC	7 cut(s)	15, 82, 1519, 1563, 1686, 1716, 2077
Tru1I	TTAA	6 cut(s)	200, 494, 1370, 1508, 1809, 1938
Tru9I	TTAA	6 cut(s)	200, 494, 1370, 1508, 1809, 1938
TscAI	CASTG	7 cut(s)	444, 658, 1521, 1564, 1885, 2011, 2100
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	3 cut(s)	529, 917, 1726
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	6 cut(s)	75, 153, 629, 1366, 1430, 1830
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	7 cut(s)	444, 658, 1521, 1564, 1885, 2011, 2100
Van91I	CCANNNNNTGG	2 cut(s)	734, 2099
VpaK11BI	GGWCC	3 cut(s)	332, 905, 1492
XagI	CCTNNNNNAGG	1 cut(s)	805
XapI	RAATTY	2 cut(s)	1817, 1977
XceI	RCATGY	2 cut(s)	1225, 2065
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 290
XmiI	GTMKAC	4 cut(s)	34, 271, 353, 513
XmnI	GAANNNNTTC	2 cut(s)	849, 1861
XspI	CTAG	2 cut(s)	117, 837
ZrmI	AGTACT	1 cut(s)	2070
Zsp2I	ATGCAT	1 cut(s)	1795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.