Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

16460037 .. 16461141

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTTCAATTACATCTCATTCTAATGTTAAGCTTATTAGTGCAATTCATGAAAGTGAAATTGGTTACCATCCCAGTAGTCCCACAGCAGTTGCGGAGGTTGAAACAGTTGCTAAAGGAGATGCCGCAGTGAAGGAAGACTTCATTCAAAACCGAAACCACATAAAGGTTCCACTAATCGAAAATGATGAGGGTCTTTTCTTGACATGGGAAGATTTGTGGGTGAGAGTAGCCTCAAATTTAAATGAGGGAGAAAAGCATAGTAGTGATGGAAGAAGCTGCAGATCAATCCTCCGAGGGGTAACTGGTTATGCCAAACCAGGGCAGCTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCTGGTAATGATGTTTTGAAGCTACGTATATGTGTATTTACGTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

144

Amino Acids

15.56

Weight (kDa)

5.92

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	98 - 131	5.2e-08	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 126
AcsI	RAATTY	1 cut(s)	238
AfiI	CCNNNNNNNGG	3 cut(s)	166, 298, 321
AgsI	TTSAA	4 cut(s)	9, 104, 149, 403
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	5 cut(s)	34, 279, 328, 386, 406
AluI	AGCT	5 cut(s)	34, 279, 328, 386, 406
ApeKI	GCWGC	2 cut(s)	279, 325
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	266, 337
BccI	CCATC	2 cut(s)	78, 263
BciT130I	CCWGG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	3 cut(s)	126, 280, 326
BlsI	GCNGC	3 cut(s)	127, 281, 327
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	171, 345
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	112, 367
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	144
BsaAI	YACGTR	2 cut(s)	410, 426
BsaJI	CCNNGG	2 cut(s)	295, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 298, 321
Bse1I	ACTGG	2 cut(s)	75, 310
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	295, 320
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	166, 298, 321
BseNI	ACTGG	2 cut(s)	75, 310
BseXI	GCAGC	2 cut(s)	266, 337
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	166, 298, 321
BsmFI	GGGAC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	2 cut(s)	95, 126
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	171, 345
BspMAI	CTGCAG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	75, 310
BssECI	CCNNGG	2 cut(s)	295, 320
BssMI	GATC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	375
BstBAI	YACGTR	2 cut(s)	410, 426
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	280
BstSNI	TACGTA	2 cut(s)	410, 426
BstV1I	GCAGC	2 cut(s)	266, 337
BstV2I	GAAGAC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	50, 207
CviJI	RGCY	8 cut(s)	5, 34, 233, 279, 328, 335, 386, 406
CviKI_1	RGCY	8 cut(s)	5, 34, 233, 279, 328, 335, 386, 406
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco105I	TACGTA	2 cut(s)	410, 426
Eco47I	GGWCC	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	53, 210
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	49, 206
Fnu4HI	GCNGC	3 cut(s)	126, 280, 326
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	126, 280, 326
GluI	GCNGC	3 cut(s)	126, 280, 326
Hin1II	CATG	2 cut(s)	53, 210
HindIII	AAGCTT	1 cut(s)	32
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	3 cut(s)	50, 202, 374
HpyAV	CCTTC	2 cut(s)	127, 357
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	409, 425
HpyCH4V	TGCA	2 cut(s)	44, 282
HpySE526I	ACGT	2 cut(s)	409, 425
Hsp92II	CATG	2 cut(s)	53, 210
Kzo9I	GATC	1 cut(s)	284
LpnPI	CCDG	6 cut(s)	88, 291, 306, 333, 336, 372
Lsp1109I	GCAGC	2 cut(s)	266, 337
LweI	GCATC	2 cut(s)	112, 367
MaeII	ACGT	2 cut(s)	409, 425
MaeIII	GTNAC	2 cut(s)	65, 301
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	4 cut(s)	149, 224, 285, 362
MluCI	AATT	4 cut(s)	9, 45, 60, 238
MnlI	CCTC	6 cut(s)	91, 184, 241, 244, 290, 302
MseI	TTAA	2 cut(s)	30, 242
MslI	CAYNNNNRTG	3 cut(s)	24, 54, 264
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	53, 210
NlaIV	GGNNCC	2 cut(s)	171, 345
PagI	TCATGA	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	127, 281, 327
Ppu21I	YACGTR	2 cut(s)	410, 426
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	171, 345
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	284
RseI	CAYNNNNRTG	3 cut(s)	24, 54, 264
SaqAI	TTAA	2 cut(s)	30, 242
SatI	GCNGC	3 cut(s)	126, 280, 326
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	9 cut(s)	36, 102, 171, 281, 330, 388, 408, 412, 428
SfaNI	GCATC	2 cut(s)	112, 367
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	344
SmiI	ATTTAAAT	1 cut(s)	243
SmiMI	CAYNNNNRTG	3 cut(s)	24, 54, 264
SnaBI	TACGTA	2 cut(s)	410, 426
Sse9I	AATT	4 cut(s)	9, 45, 60, 238
SsiI	CCGC	2 cut(s)	95, 126
StyD4I	CCNGG	1 cut(s)	319
SwaI	ATTTAAAT	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	412, 428
TaqI	TCGA	1 cut(s)	180
TasI	AATT	4 cut(s)	9, 45, 60, 238
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	30, 242
Tru9I	TTAA	2 cut(s)	30, 242
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	2 cut(s)	279, 325
TspDTI	ATGAA	3 cut(s)	38, 66, 133
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.