Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

74841984 .. 74850598

Gene Structure 8615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG523100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGCTTCTGGTAGATTCCATTCAAATGTCCGTCGACACATCGATGCTACGTTTGAAAATGAATATGGTTACCACACCAGTAATCCCACAGGATTACTGGAGATTGAAACAGTTGCTAGAGGAGCTTCCATCCTGGAGATTGAAACAGTTGCTGGAGGAGCTTCATTCCGAAACCAAAACCGAAACCATGTAGTTCCATTATTAACTGTAATTGATGAGGGTGTTTCCTTGACATGGCAAGATTTGTGGGTGAGAGTAGAAGGAAGAAGCTGTAGATCAATCCTCCAAGGGCTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGACTCGGTTCAAACACAAGGCAAACAGGGGAGATCCTAATCAATGGACATAAACAAGCACTGGCTTATGGAACTTCTGCATATGTGACACAAGATGATACTCTAATCACAACATTAACAGTCGAAGAAGCCGTATACTACTCAGCTCAGCTGCAATTACCAGACTCCATGTCCAAGTCGGAAAAGAAAGAGAGAGCACAGGTAACGATAAGAGAGATGGGTTTGCAAGATGCCATGAACACGAGGATCGGAGGTTGGGGAGCCAAAGGCCTCAGTGGCGGCCAAAAGAGAAGAGTCAGCATTTGCATTGAGCTTCTTACGCGACCAAAGCTTCTCTTCTTGGACGAGCCAACAAGTGGGCTTGACAGCGCGGCGTCTTATTATGTGATGAGCCGAATTGCAAATCTTGGTTGTCATAAATCCTCGCCGAGGACTATTGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCGGGTAGAACTGTGTATTTCGGTCCAGCTTCTGCAGCCAATGAGTTTTTTGCTTCAAGTGGTTTTCCATGCCCAACTCTTCAAAATCCATCAGATCATTTCCTCAAGACCATAAACAAAGATTTTGAGCAGGACATTGAGAAAGGCATAGCTGGAACCACACCCACAGAGGAAGCCATTGATACTCTAATAAAGTCTTACAAATCATCTGAAAATTATCACCAACTTCAAAGACATATAGCTGAACTACATAAGAAGGATTGTGAAGCATTGGAAAGGAGAAGACATGCTGGCTTTCTTACACAATCTTTCGTGCTTACAAGAAGATCGTTCGTGAACATGTATCGAGATCGAGGCTACTACTGGTTGCGCCTTGTTATCTACACCGGCATAGCTGTAGGCTTAGGCGTTGTCTATCATGGTCTTGGACATACTTATGGATCAATCCAGGCAAGAGGCTCGATGCTCTCGTTTATAGCTTCATTTTTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGGTATTTGAACGCGAGAGACTAAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGGCAACACATTTTCCTCGGTCCCTTTCTTGATGTTAATTTCACTGATTCCTGGAGCAACAGCATATTACCTTGCCGGACTTCACAGTGGATTCGAACACTTCTTCTACTTTGCTTCTGCACTATTTGCTTGCATAATGCTGGTTGAGAGCCTAATGATGATAATTGCGAGCATCGTGCCAAACTACCTGATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGTAATGATTTTATGCGGTGGATTCTTCCAGCTGCCAAATGATCTCCCGGATGTTTTGTTCAAGTACCCATTATATCACATTGCTTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTTCAAGAACAAGATTTCCAAACGACAATCGTCTCGGAATGAGTTCCTCTAAATGGCTCAGTGGTGAAAGCATTTTGAAAGATAAATGGCAGGTGGAAATGGGTTACTCCAAATGGGTTGATCTTGCTATCTTGTTAGGAATGGTAGTTCTGTATCGAATTTTGTTCTTCGTTATCATCAAGACCACTGAGAAAGTGAAGACTATTACCTCAGCTCTTCTGTCCGTGGCTCCCAATCGAAGCATGCAAGTACTGGTGAATCCCTCCTCTACTCCACTGCATGGAGAGTGTTCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

706

Amino Acids

78.23

Weight (kDa)

8.7

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	95 - 246	2.3e-28	ABC transporter
ABC2_membrane_7	PF19055	278 - 333	1.2e-09	ABC-2 type transporter
ABC2_membrane	PF01061	396 - 608	5.9e-39	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1903
Acc36I	ACCTGC	1 cut(s)	1903
AccB7I	CCANNNNNTGG	2 cut(s)	737, 2102
AccI	GTMKAC	3 cut(s)	34, 356, 516
AccII	CGCG	3 cut(s)	703, 752, 1434
AciI	CCGC	3 cut(s)	660, 752, 1713
AclWI	GGATC	3 cut(s)	409, 635, 1333
AcoI	YGGCCR	2 cut(s)	661, 1383
AcsI	RAATTY	2 cut(s)	1820, 1980
AcuI	CTGAAG	1 cut(s)	867
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	2 cut(s)	1763, 2073
AfiI	CCNNNNNNNGG	7 cut(s)	234, 312, 737, 810, 1392, 1875, 2102
AflIII	ACRYGT	1 cut(s)	1224
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	5 cut(s)	132, 310, 1332, 1525, 1800
AleI	CACNNNNGTG	1 cut(s)	1455
AloI	GAACNNNNNNTCC	8 cut(s)	373, 405, 1739, 1771, 1822, 1854, 1953, 1985
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	3 cut(s)	376, 1432, 1859
AlwI	GGATC	3 cut(s)	409, 635, 1333
AlwNI	CAGNNNCTG	2 cut(s)	152, 917
AoxI	GGCC	3 cut(s)	649, 661, 1383
ApeKI	GCWGC	3 cut(s)	532, 920, 1729
ApoI	RAATTY	2 cut(s)	1820, 1980
Asp700I	GAANNNNTTC	2 cut(s)	852, 1864
AspLEI	GCGC	2 cut(s)	752, 1257
AspS9I	GGNCC	3 cut(s)	335, 908, 1495
AsuC2I	CCSGG	1 cut(s)	1745
AsuHPI	GGTGA	4 cut(s)	262, 1097, 1898, 2089
AsuII	TTCGAA	2 cut(s)	1569, 2114
AvaII	GGWCC	3 cut(s)	335, 908, 1495
BaeGI	GKGCMC	1 cut(s)	1452
BalI	TGGCCA	1 cut(s)	1385
BauI	CACGAG	1 cut(s)	622
BbsI	GAAGAC	5 cut(s)	869, 876, 1174, 1419, 2027
Bbv12I	GWGCWC	1 cut(s)	580
BbvCI	CCTCAGC	1 cut(s)	2032
BbvI	GCAGC	3 cut(s)	519, 932, 1716
BccI	CCATC	6 cut(s)	137, 592, 836, 840, 982, 1660
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	4 cut(s)	1326, 1360, 1633, 1667
BciT130I	CCWGG	5 cut(s)	134, 312, 1334, 1527, 1802
BcnI	CCSGG	1 cut(s)	1745
BcoDI	GTCTC	3 cut(s)	376, 1432, 1859
BfaI	CTAG	2 cut(s)	117, 840
BfmI	CTRYAG	3 cut(s)	271, 918, 1281
BfuAI	ACCTGC	1 cut(s)	1903
BglI	GCCNNNNNGGC	1 cut(s)	657
BisI	GCNGC	5 cut(s)	533, 661, 753, 921, 1730
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	5 cut(s)	534, 662, 754, 922, 1731
BmcAI	AGTACT	1 cut(s)	2073
Bme1390I	CCNGG	6 cut(s)	134, 312, 1334, 1527, 1745, 1802
Bme18I	GGWCC	3 cut(s)	335, 908, 1495
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	335, 908, 1495
BmiI	GGNNCC	5 cut(s)	336, 643, 1042, 1497, 2052
BmrFI	CCNGG	6 cut(s)	134, 312, 1334, 1527, 1745, 1802
BmsI	GCATC	5 cut(s)	34, 358, 601, 1338, 1656
BoxI	GACNNNNGTC	1 cut(s)	1851
BpiI	GAAGAC	5 cut(s)	869, 876, 1174, 1419, 2027
BpmI	CTGGAG	4 cut(s)	119, 155, 174, 1548
Bpu10I	CCTNAGC	2 cut(s)	1288, 2032
Bpu1102I	GCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	2 cut(s)	1569, 2114
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	1745
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	755
BsaJI	CCNNGG	7 cut(s)	286, 311, 809, 1491, 1693, 1801, 2046
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	7 cut(s)	234, 312, 737, 810, 1392, 1875, 2102
Bse118I	RCCGGY	1 cut(s)	1271
Bse1I	ACTGG	6 cut(s)	78, 102, 301, 447, 1253, 2079
Bse3DI	GCAATG	1 cut(s)	1776
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	5 cut(s)	134, 312, 1334, 1527, 1802
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	7 cut(s)	286, 311, 809, 1491, 1693, 1801, 2046
BseGI	GGATG	3 cut(s)	129, 828, 1753
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	7 cut(s)	234, 312, 737, 810, 1392, 1875, 2102
BseMI	GCAATG	1 cut(s)	1776
BseMII	CTCAG	6 cut(s)	537, 542, 667, 1894, 2001, 2046
BseNI	ACTGG	6 cut(s)	78, 102, 301, 447, 1253, 2079
BseRI	GAGGAG	3 cut(s)	135, 171, 2077
BseSI	GKGCMC	1 cut(s)	1452
BseXI	GCAGC	3 cut(s)	519, 932, 1716
BsgI	GTGCAG	1 cut(s)	1578
Bsh1236I	CGCG	3 cut(s)	703, 752, 1434
BshFI	GGCC	3 cut(s)	651, 663, 1385
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	3 cut(s)	1272, 1551, 1745
BslFI	GGGAC	1 cut(s)	1481
BslI	CCNNNNNNNGG	7 cut(s)	234, 312, 737, 810, 1392, 1875, 2102
BsmAI	GTCTC	3 cut(s)	376, 1432, 1859
BsmBI	CGTCTC	1 cut(s)	1859
BsmFI	GGGAC	1 cut(s)	1481
BsmI	GAATGC	1 cut(s)	1796
BsnI	GGCC	3 cut(s)	651, 663, 1385
Bsp119I	TTCGAA	2 cut(s)	1569, 2114
Bsp1286I	GDGCHC	2 cut(s)	580, 1452
Bsp143I	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	3 cut(s)	660, 752, 1713
BspANI	GGCC	3 cut(s)	651, 663, 1385
BspCNI	CTCAG	6 cut(s)	536, 541, 666, 1893, 2002, 2045
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	3 cut(s)	703, 752, 1434
BspLI	GGNNCC	5 cut(s)	336, 643, 1042, 1497, 2052
BspMAI	CTGCAG	1 cut(s)	922
BspMI	ACCTGC	1 cut(s)	1903
BspPI	GGATC	3 cut(s)	409, 635, 1333
BspQI	GCTCTTC	1 cut(s)	2043
BspT104I	TTCGAA	2 cut(s)	1569, 2114
BsrDI	GCAATG	1 cut(s)	1776
BsrFI	RCCGGY	1 cut(s)	1271
BsrI	ACTGG	6 cut(s)	78, 102, 301, 447, 1253, 2079
BssAI	RCCGGY	1 cut(s)	1271
BssECI	CCNNGG	7 cut(s)	286, 311, 809, 1491, 1693, 1801, 2046
BssMI	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
BssNAI	GTATAC	1 cut(s)	517
BssNI	GRCGYC	1 cut(s)	755
BssSI	CACGAG	1 cut(s)	622
BssT1I	CCWWGG	2 cut(s)	286, 1693
Bst1107I	GTATAC	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	622
Bst2UI	CCWGG	5 cut(s)	134, 312, 1334, 1527, 1802
Bst4CI	ACNGT	6 cut(s)	112, 148, 208, 502, 898, 1562
Bst6I	CTCTTC	5 cut(s)	366, 667, 722, 969, 2043
BstACI	GRCGYC	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	1601
BstBI	TTCGAA	2 cut(s)	1569, 2114
BstC8I	GCNNGC	4 cut(s)	1177, 1606, 1645, 2066
BstDEI	CTNAG	7 cut(s)	523, 528, 653, 1288, 1880, 2010, 2032
BstDSI	CCRYGG	1 cut(s)	2046
BstEII	GGTNACC	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	808
BstF5I	GGATG	3 cut(s)	129, 828, 1753
BstFNI	CGCG	3 cut(s)	703, 752, 1434
BstHHI	GCGC	2 cut(s)	752, 1257
BstKTI	GATC	9 cut(s)	278, 417, 630, 982, 1214, 1237, 1328, 1741, 1945
BstMAI	GTCTC	3 cut(s)	376, 1432, 1859
BstMBI	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 158, 657, 700, 709, 920, 1601
BstNI	CCWGG	5 cut(s)	134, 312, 1334, 1527, 1802
BstNSI	RCATGY	3 cut(s)	1175, 1228, 2068
BstPAI	GACNNNNGTC	1 cut(s)	1851
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	6 cut(s)	132, 310, 1332, 1525, 1743, 1800
BstSFI	CTRYAG	3 cut(s)	271, 918, 1281
BstSLI	GKGCMC	1 cut(s)	1452
BstUI	CGCG	3 cut(s)	703, 752, 1434
BstV1I	GCAGC	3 cut(s)	519, 932, 1716
BstV2I	GAAGAC	5 cut(s)	869, 876, 1174, 1419, 2027
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BstZ17I	GTATAC	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	651, 663, 1385
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	2046
BtsCI	GGATG	3 cut(s)	129, 828, 1753
BtsI	GCAGTG	1 cut(s)	2096
BtsIMutI	CAGTG	7 cut(s)	440, 661, 1517, 1567, 1888, 2007, 2096
BveI	ACCTGC	1 cut(s)	1903
Cac8I	GCNNGC	4 cut(s)	1177, 1606, 1645, 2066
CaiI	CAGNNNCTG	2 cut(s)	152, 917
CfoI	GCGC	2 cut(s)	752, 1257
Cfr10I	RCCGGY	1 cut(s)	1271
Cfr13I	GGNCC	3 cut(s)	335, 908, 1495
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	2 cut(s)	1762, 2072
CspCI	CAANNNNNGTGG	2 cut(s)	227, 262
CviQI	GTAC	2 cut(s)	1762, 2072
DdeI	CTNAG	7 cut(s)	523, 528, 653, 1288, 1880, 2010, 2032
DpnI	GATC	9 cut(s)	277, 416, 629, 981, 1213, 1236, 1327, 1740, 1944
DpnII	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	661, 1383
Eam1104I	CTCTTC	5 cut(s)	366, 667, 722, 969, 2043
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EarI	CTCTTC	5 cut(s)	366, 667, 722, 969, 2043
Eco130I	CCWWGG	2 cut(s)	286, 1693
Eco147I	AGGCCT	1 cut(s)	651
Eco47I	GGWCC	3 cut(s)	335, 908, 1495
Eco57I	CTGAAG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	5 cut(s)	132, 310, 1332, 1525, 1800
EcoT14I	CCWWGG	2 cut(s)	286, 1693
EcoT22I	ATGCAT	1 cut(s)	1798
ErhI	CCWWGG	2 cut(s)	286, 1693
Esp3I	CGTCTC	1 cut(s)	1859
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	1481
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	3 cut(s)	34, 356, 516
Fnu4HI	GCNGC	5 cut(s)	533, 661, 753, 921, 1730
FokI	GGATG	3 cut(s)	116, 815, 1760
Fsp4HI	GCNGC	5 cut(s)	533, 661, 753, 921, 1730
FspBI	CTAG	2 cut(s)	117, 840
GlaI	GCGC	2 cut(s)	751, 1256
GluI	GCNGC	5 cut(s)	533, 661, 753, 921, 1730
GsuI	CTGGAG	4 cut(s)	119, 155, 174, 1548
HaeIII	GGCC	3 cut(s)	651, 663, 1385
HapII	CCGG	3 cut(s)	1272, 1551, 1745
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	2 cut(s)	752, 1257
Hin1I	GRCGYC	1 cut(s)	755
Hin6I	GCGC	2 cut(s)	750, 1255
HinP1I	GCGC	2 cut(s)	750, 1255
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	9 cut(s)	15, 384, 545, 675, 1522, 1566, 1689, 1719, 2080
HpaII	CCGG	3 cut(s)	1272, 1551, 1745
HphI	GGTGA	4 cut(s)	262, 1097, 1898, 2089
Hpy166II	GTNNAC	4 cut(s)	35, 357, 517, 1222
Hpy188I	TCNGA	7 cut(s)	170, 562, 632, 847, 979, 1096, 1859
Hpy188III	TCNNGA	7 cut(s)	365, 991, 1219, 1232, 1504, 1827, 2002
Hpy8I	GTNNAC	4 cut(s)	35, 357, 517, 1222
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	5 cut(s)	254, 348, 1135, 1410, 1414
HpyCH4III	ACNGT	6 cut(s)	112, 148, 208, 502, 898, 1562
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 158, 657, 700, 709, 920, 1601
HpyF3I	CTNAG	7 cut(s)	523, 528, 653, 1288, 1880, 2010, 2032
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	755
HspAI	GCGC	2 cut(s)	750, 1255
Kzo9I	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
LguI	GCTCTTC	1 cut(s)	2043
LmnI	GCTCC	5 cut(s)	122, 158, 641, 1529, 2056
Lsp1109I	GCAGC	3 cut(s)	519, 932, 1716
LweI	GCATC	5 cut(s)	34, 358, 601, 1338, 1656
MaeI	CTAG	2 cut(s)	117, 840
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	4 cut(s)	68, 466, 583, 1925
MalI	GATC	9 cut(s)	277, 416, 629, 981, 1213, 1236, 1327, 1740, 1944
MboI	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	580, 1452
MlsI	TGGCCA	1 cut(s)	1385
MluCI	AATT	8 cut(s)	210, 536, 777, 1099, 1512, 1638, 1820, 1980
MluNI	TGGCCA	1 cut(s)	1385
MlyI	GAGTC	3 cut(s)	378, 539, 684
MmeI	TCCRAC	1 cut(s)	540
Mox20I	TGGCCA	1 cut(s)	1385
Mph1103I	ATGCAT	1 cut(s)	1798
MroXI	GAANNNNTTC	2 cut(s)	852, 1864
MscI	TGGCCA	1 cut(s)	1385
MseI	TTAA	5 cut(s)	203, 497, 1373, 1511, 1812
MslI	CAYNNNNRTG	5 cut(s)	24, 42, 1320, 1455, 1791
Msp20I	TGGCCA	1 cut(s)	1385
MspA1I	CMGCKG	2 cut(s)	532, 1729
MspI	CCGG	3 cut(s)	1272, 1551, 1745
MspR9I	CCNGG	6 cut(s)	134, 312, 1334, 1527, 1745, 1802
Mva1269I	GAATGC	1 cut(s)	1796
MvaI	CCWGG	5 cut(s)	134, 312, 1334, 1527, 1802
MvnI	CGCG	3 cut(s)	703, 752, 1434
MwoI	GCNNNNNNNGC	7 cut(s)	122, 158, 657, 700, 709, 920, 1601
NciI	CCSGG	1 cut(s)	1745
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
NlaIV	GGNNCC	5 cut(s)	336, 643, 1042, 1497, 2052
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	466
NsiI	ATGCAT	1 cut(s)	1798
NspI	RCATGY	3 cut(s)	1175, 1228, 2068
NspV	TTCGAA	2 cut(s)	1569, 2114
OliI	CACNNNNGTG	1 cut(s)	1455
PaeI	GCATGC	1 cut(s)	2068
PaqCI	CACCTGC	1 cut(s)	1903
PceI	AGGCCT	1 cut(s)	651
PciI	ACATGT	1 cut(s)	1224
PciSI	GCTCTTC	1 cut(s)	2043
PcsI	WCGNNNNNNNCGW	2 cut(s)	510, 1352
PctI	GAATGC	1 cut(s)	1796
PdmI	GAANNNNTTC	2 cut(s)	852, 1864
PfeI	GAWTC	6 cut(s)	15, 1522, 1566, 1689, 1719, 2080
PflMI	CCANNNNNTGG	2 cut(s)	737, 2102
PfoI	TCCNGGA	3 cut(s)	132, 1525, 1743
PkrI	GCNGC	5 cut(s)	534, 662, 754, 922, 1731
PleI	GAGTC	3 cut(s)	378, 539, 683
PpsI	GAGTC	3 cut(s)	378, 539, 683
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	1224
PshAI	GACNNNNGTC	1 cut(s)	1851
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	5 cut(s)	132, 310, 1332, 1525, 1800
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	5 cut(s)	132, 310, 1332, 1525, 1800
PspN4I	GGNNCC	5 cut(s)	336, 643, 1042, 1497, 2052
PspPI	GGNCC	3 cut(s)	335, 908, 1495
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	2 cut(s)	152, 917
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	2 cut(s)	532, 1729
RsaI	GTAC	2 cut(s)	1763, 2073
RsaNI	GTAC	2 cut(s)	1762, 2072
RseI	CAYNNNNRTG	5 cut(s)	24, 42, 1320, 1455, 1791
SalI	GTCGAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	2043
SaqAI	TTAA	5 cut(s)	203, 497, 1373, 1511, 1812
SatI	GCNGC	5 cut(s)	533, 661, 753, 921, 1730
Sau3AI	GATC	9 cut(s)	275, 414, 627, 979, 1211, 1234, 1325, 1738, 1942
Sau96I	GGNCC	3 cut(s)	335, 908, 1495
ScaI	AGTACT	1 cut(s)	2073
SchI	GAGTC	3 cut(s)	378, 539, 684
ScrFI	CCNGG	6 cut(s)	134, 312, 1334, 1527, 1745, 1802
SduI	GDGCHC	2 cut(s)	580, 1452
SfaNI	GCATC	5 cut(s)	34, 358, 601, 1338, 1656
SfcI	CTRYAG	3 cut(s)	271, 918, 1281
SfuI	TTCGAA	2 cut(s)	1569, 2114
SinI	GGWCC	3 cut(s)	335, 908, 1495
SmiMI	CAYNNNNRTG	5 cut(s)	24, 42, 1320, 1455, 1791
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SphI	GCATGC	1 cut(s)	2068
Sse9I	AATT	8 cut(s)	210, 536, 777, 1099, 1512, 1638, 1820, 1980
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	3 cut(s)	660, 752, 1713
SspMI	CTAG	2 cut(s)	117, 840
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	6 cut(s)	132, 310, 1332, 1525, 1743, 1800
StyI	CCWWGG	2 cut(s)	286, 1693
TaaI	ACNGT	6 cut(s)	112, 148, 208, 502, 898, 1562
TaiI	ACGT	1 cut(s)	53
TaqII	GACCGA	2 cut(s)	896, 1483
TasI	AATT	8 cut(s)	210, 536, 777, 1099, 1512, 1638, 1820, 1980
TatI	WGTACW	1 cut(s)	2071
TauI	GCSGC	2 cut(s)	663, 755
TfiI	GAWTC	6 cut(s)	15, 1522, 1566, 1689, 1719, 2080
Tru1I	TTAA	5 cut(s)	203, 497, 1373, 1511, 1812
Tru9I	TTAA	5 cut(s)	203, 497, 1373, 1511, 1812
TscAI	CASTG	7 cut(s)	447, 661, 1524, 1567, 1888, 2014, 2103
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	532, 920, 1729
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	7 cut(s)	75, 153, 632, 1356, 1369, 1433, 1833
TspGWI	ACGGA	2 cut(s)	20, 2035
TspRI	CASTG	7 cut(s)	447, 661, 1524, 1567, 1888, 2014, 2103
Van91I	CCANNNNNTGG	2 cut(s)	737, 2102
VpaK11BI	GGWCC	3 cut(s)	335, 908, 1495
XagI	CCTNNNNNAGG	1 cut(s)	808
XapI	RAATTY	2 cut(s)	1820, 1980
XceI	RCATGY	3 cut(s)	1175, 1228, 2068
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 293
XmiI	GTMKAC	3 cut(s)	34, 356, 516
XmnI	GAANNNNTTC	2 cut(s)	852, 1864
XspI	CTAG	2 cut(s)	117, 840
ZrmI	AGTACT	1 cut(s)	2073
Zsp2I	ATGCAT	1 cut(s)	1798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.