Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

70549530 .. 70553524

Gene Structure 3995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGGCTTCAGGTAGATCTCATTCCAGTCTCCGACACGACATTGATGCTACTCACGAACATGAATATGGTTACCATCCCAGTAATCCTACACAAGTTCATGAGATTGAAACAGTTGCCAGAGGAGATTCCTTCCAAAATCAAAACCGGAACCATGTAGTTCCGGTCACTGAAGGTGATGAGGGTGCTTCGTTGACATGGAAAGATTTGTGGGTGACGATACAGGGAAGAACCTGCAGATCAATCCTCCAAGGGCTAACTGGTTATGCCACACCAGGACAGCTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGACTCAGTTCAAACACAAGGCAAACAGGGGAGATCCTAATCAATGGACATAAACAAGCACTAGCATATGGAACTTCTGCATATGTGACACAAGATGATGCTATAATCACAACATTAACAGTTGAAGAAGCCGTATACTACTCAGCTCAGCTGCAATTACCAGACTCTATGTCTAAGTCGGAGAAGAAAGAGAGAGCACTAGCGACAATAAGAGAGATGGGTTTGCAAGACGCCGTGAACACGAGGATTGGAGGTTGGGGAGACAAAGGTCTCAGTGGTGGCCAAAAGAGAAGAGTCACCATTTGCATTGAGCTTCTTACACGACCAAAGCTTCTCTTTTTGGATGAACCCACAAGCGGGCTTGATAGCGCGGCGTCTTACTATGTGATGAGCAGAATTGCAAATCTTGGTCATATATCTTCTCCAAGGACTATAATTGCTTCCATCCATCAGCCAAGCTCAGAAGTCTTTCAACTCTTTGACAATCTTTGTCTGCTGTCTTCGGGTAAAACTGTATATTTTGGTCCCGCTTCTGCAGCGAATGAGTTTTTTGCTTCAAGTGGTTTCCCATGTCCAACTCTCCAAAATCCATCAGATCACTTCCTCAAGACCATAAACAAAGATTTTGATCAGGACATTGAGCAAGGGAAAGCTGGAATCACAACCACAGAGGAAGCCATTGGTACTCTAATAAACTCTTACAAATCATCTGAAAGTTATCACCAACTTCAAAGACATATAGCTGAACTACATAAGAAGGATTGCGAACCATTAGAAAGGAGAAGCCATGCGGGCTTTCTTACACAATGTTCCGTGCTTACAAGAAGATCCTCCGTGAACATGTACAGAGATCGAGGTTACTACTGGTTGCGCCTTATTATCTACATCGGTATAGCTCTAGGCTTAGGCATTGTCTTCCATGATCCTGGACATACTTATGGATCGATCCGGGCAAGAGGCTCTATGCTTATGTTTGTAGCTTCATTTCTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTTGAAGACATGAAGGTATTTCAACGAGAGAGATTAAACGGGCATTATGGTGTTAGTGCATTTGTTTTTGGCAACACCTTTTCCTCGGTGCCTTTCTTGATGTTAATTTCACTGATTCCTGGAGCAACAGCATATTACGTTACTGGGCTTCGCAGTGGATTTGAACACTTCCTCTACTTTGCTTGTGCACTATTTGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATCGTGCCGACTTTCCTCATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGTAATGATGTTATGCGGTGGATTCTTCCAGCTACCAAATGATCTTCCAGATGTTGTGTTCAAGTACCCATTATATTACATTTCTTTCCACAAGTATGCATTCCAGGGAATGTATAAGAATGAATTTGCAGGAACAAGATATCCGAACGACAATCAGCTCGGAATGAGTTCCTCTGAATGGCTCAGTGGTGAACGCATTTTGAAAGATATATGGCAGCTGGAAACCGGTTACTCCAAATGGGTAGATCTGGCTATCTTGCTAGGAATGGTAGTTCTGTATCGAGTTTTGTTCTTCGTTTTCATCAAGACCGCTGAGAAAATGAAGACTATTACCTCATTTGTTCTGTCCGTGGCTCCCAAGCGAAGCACGCAAGTACTGGTGAATCCCCCCTCTACTCCATTGCATGGTGACAGCGCTTATAACAATGCACGAGAACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

699

Amino Acids

77.47

Weight (kDa)

7.06

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	83 - 233	6.4e-27	ABC transporter
ABC2_membrane_7	PF19055	264 - 319	1.8e-09	ABC-2 type transporter
ABC2_membrane	PF01061	382 - 594	6.7e-40	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2076
Acc36I	ACCTGC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	1453
AccB7I	CCANNNNNTGG	1 cut(s)	2060
AccI	GTMKAC	2 cut(s)	317, 477
AccII	CGCG	1 cut(s)	713
AciI	CCGC	6 cut(s)	699, 713, 870, 1133, 1671, 1965
AclWI	GGATC	5 cut(s)	370, 1164, 1259, 1282, 1291
AcoI	YGGCCR	2 cut(s)	622, 1341
AcsI	RAATTY	1 cut(s)	1778
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	573, 716
AfaI	GTAC	4 cut(s)	1027, 1187, 1721, 2031
AfeI	AGCGCT	1 cut(s)	2071
AfiI	CCNNNNNNNGG	5 cut(s)	698, 699, 1350, 1833, 2060
AflIII	ACRYGT	1 cut(s)	1182
AgeI	ACCGGT	1 cut(s)	1880
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	4 cut(s)	271, 1267, 1483, 1758
AloI	GAACNNNNNNTCC	6 cut(s)	334, 366, 1780, 1812, 1911, 1943
Alw21I	GWGCWC	2 cut(s)	541, 1555
Alw26I	GTCTC	4 cut(s)	32, 337, 597, 617
Alw44I	GTGCAC	1 cut(s)	1551
AlwI	GGATC	5 cut(s)	370, 1164, 1259, 1282, 1291
Aor51HI	AGCGCT	1 cut(s)	2071
AoxI	GGCC	2 cut(s)	622, 1341
ApaLI	GTGCAC	1 cut(s)	1551
ApeKI	GCWGC	3 cut(s)	493, 878, 1870
ApoI	RAATTY	1 cut(s)	1778
AsiGI	ACCGGT	1 cut(s)	1880
Asp700I	GAANNNNTTC	2 cut(s)	810, 1822
AspLEI	GCGC	3 cut(s)	713, 1215, 2072
AspS9I	GGNCC	2 cut(s)	296, 866
AsuC2I	CCSGG	1 cut(s)	1292
AsuHPI	GGTGA	7 cut(s)	185, 223, 631, 1055, 1856, 2047, 2075
AvaII	GGWCC	2 cut(s)	296, 866
BaeGI	GKGCMC	1 cut(s)	1555
BalI	TGGCCA	2 cut(s)	624, 1343
BanI	GGYRCC	1 cut(s)	1453
BauI	CACGAG	2 cut(s)	583, 2085
BbsI	GAAGAC	4 cut(s)	834, 1249, 1377, 1985
Bbv12I	GWGCWC	2 cut(s)	541, 1555
BbvI	GCAGC	3 cut(s)	480, 890, 1882
BccI	CCATC	5 cut(s)	81, 553, 794, 798, 940
BceAI	ACGGC	2 cut(s)	458, 560
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 1591, 1625
BciT130I	CCWGG	4 cut(s)	273, 1269, 1485, 1760
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	1292
BcoDI	GTCTC	4 cut(s)	32, 337, 597, 617
BfaI	CTAG	4 cut(s)	404, 542, 1241, 1916
BfmI	CTRYAG	2 cut(s)	232, 876
BfoI	RGCGCY	1 cut(s)	2073
BfuAI	ACCTGC	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	1134
BglII	AGATCT	2 cut(s)	14, 1900
BisI	GCNGC	4 cut(s)	494, 714, 879, 1871
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	495, 715, 880, 1872
BmcAI	AGTACT	1 cut(s)	2031
Bme1390I	CCNGG	5 cut(s)	273, 1269, 1292, 1485, 1760
Bme18I	GGWCC	2 cut(s)	296, 866
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	296, 866
BmiI	GGNNCC	5 cut(s)	149, 297, 868, 1455, 2010
BmrFI	CCNGG	5 cut(s)	273, 1269, 1292, 1485, 1760
BmrI	ACTGGG	2 cut(s)	72, 1518
BmsI	GCATC	5 cut(s)	34, 319, 430, 1560, 1614
BmuI	ACTGGG	2 cut(s)	72, 1518
BoxI	GACNNNNGTC	1 cut(s)	609
BpiI	GAAGAC	4 cut(s)	834, 1249, 1377, 1985
BpmI	CTGGAG	1 cut(s)	1506
Bpu10I	CCTNAGC	1 cut(s)	1246
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	1292
Bsa29I	ATCGAT	1 cut(s)	1286
BsaBI	GATNNNNATC	2 cut(s)	380, 969
BsaHI	GRCGYC	2 cut(s)	573, 716
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	6 cut(s)	247, 767, 1449, 1651, 1759, 2004
BsaWI	WCCGGW	3 cut(s)	144, 160, 1880
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	5 cut(s)	698, 699, 1350, 1833, 2060
Bse118I	RCCGGY	1 cut(s)	1880
Bse1I	ACTGG	6 cut(s)	24, 78, 262, 1211, 1513, 2037
Bse3DI	GCAATG	1 cut(s)	2054
Bse8I	GATNNNNATC	2 cut(s)	380, 969
BseBI	CCWGG	4 cut(s)	273, 1269, 1485, 1760
BseCI	ATCGAT	1 cut(s)	1286
BseDI	CCNNGG	6 cut(s)	247, 767, 1449, 1651, 1759, 2004
BseGI	GGATG	3 cut(s)	73, 691, 786
BseJI	GATNNNNATC	2 cut(s)	380, 969
BseLI	CCNNNNNNNGG	5 cut(s)	698, 699, 1350, 1833, 2060
BseMI	GCAATG	1 cut(s)	2054
BseMII	CTCAG	7 cut(s)	361, 498, 503, 628, 816, 1852, 1959
BseNI	ACTGG	6 cut(s)	24, 78, 262, 1211, 1513, 2037
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	1555
BseXI	GCAGC	3 cut(s)	480, 890, 1882
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	2 cut(s)	624, 1343
BshNI	GGYRCC	1 cut(s)	1453
BshTI	ACCGGT	1 cut(s)	1880
BshVI	ATCGAT	1 cut(s)	1286
BsiHKAI	GWGCWC	2 cut(s)	541, 1555
BsiSI	CCGG	4 cut(s)	145, 161, 1291, 1881
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	5 cut(s)	698, 699, 1350, 1833, 2060
BsmAI	GTCTC	4 cut(s)	32, 337, 597, 617
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	1 cut(s)	1754
BsnI	GGCC	2 cut(s)	624, 1343
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	541, 1555
Bsp1407I	TGTACA	1 cut(s)	1185
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	6 cut(s)	699, 713, 870, 1133, 1671, 1965
BspANI	GGCC	2 cut(s)	624, 1343
BspCNI	CTCAG	7 cut(s)	360, 497, 502, 627, 815, 1851, 1960
BspDI	ATCGAT	1 cut(s)	1286
BspFNI	CGCG	1 cut(s)	713
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	5 cut(s)	149, 297, 868, 1455, 2010
BspMAI	CTGCAG	2 cut(s)	236, 880
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	5 cut(s)	370, 1164, 1259, 1282, 1291
BspT107I	GGYRCC	1 cut(s)	1453
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	2054
BsrFI	RCCGGY	1 cut(s)	1880
BsrGI	TGTACA	1 cut(s)	1185
BsrI	ACTGG	6 cut(s)	24, 78, 262, 1211, 1513, 2037
BssAI	RCCGGY	1 cut(s)	1880
BssECI	CCNNGG	6 cut(s)	247, 767, 1449, 1651, 1759, 2004
BssNAI	GTATAC	1 cut(s)	478
BssNI	GRCGYC	2 cut(s)	573, 716
BssSI	CACGAG	2 cut(s)	583, 2085
BssT1I	CCWWGG	3 cut(s)	247, 767, 1651
Bst1107I	GTATAC	1 cut(s)	478
Bst2BI	CACGAG	2 cut(s)	583, 2085
Bst2UI	CCWGG	4 cut(s)	273, 1269, 1485, 1760
Bst4CI	ACNGT	3 cut(s)	112, 463, 856
Bst6I	CTCTTC	2 cut(s)	327, 628
BstACI	GRCGYC	2 cut(s)	573, 716
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstAUI	TGTACA	1 cut(s)	1185
BstC8I	GCNNGC	5 cut(s)	701, 1135, 1564, 1603, 2024
BstDEI	CTNAG	9 cut(s)	347, 484, 489, 516, 614, 802, 1246, 1838, 1968
BstDSI	CCRYGG	1 cut(s)	2004
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	73, 691, 786
BstFNI	CGCG	1 cut(s)	713
BstH2I	RGCGCY	1 cut(s)	2073
BstHHI	GCGC	3 cut(s)	713, 1215, 2072
BstMAI	GTCTC	4 cut(s)	32, 337, 597, 617
BstMWI	GCNNNNNNNGC	4 cut(s)	878, 1134, 1559, 2023
BstNI	CCWGG	4 cut(s)	273, 1269, 1485, 1760
BstNSI	RCATGY	1 cut(s)	1186
BstPAI	GACNNNNGTC	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	5 cut(s)	271, 1267, 1290, 1483, 1758
BstSFI	CTRYAG	2 cut(s)	232, 876
BstSLI	GKGCMC	1 cut(s)	1555
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	480, 890, 1882
BstV2I	GAAGAC	4 cut(s)	834, 1249, 1377, 1985
BstX2I	RGATCY	4 cut(s)	14, 375, 1169, 1900
BstXI	CCANNNNNNTGG	1 cut(s)	1268
BstYI	RGATCY	4 cut(s)	14, 375, 1169, 1900
BstZ17I	GTATAC	1 cut(s)	478
Bsu15I	ATCGAT	1 cut(s)	1286
BsuRI	GGCC	2 cut(s)	624, 1343
BsuTUI	ATCGAT	1 cut(s)	1286
BtgI	CCRYGG	1 cut(s)	2004
BtsCI	GGATG	3 cut(s)	73, 691, 786
BtsI	GCAGTG	1 cut(s)	1525
BtsIMutI	CAGTG	5 cut(s)	165, 622, 1475, 1525, 1846
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	5 cut(s)	701, 1135, 1564, 1603, 2024
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	3 cut(s)	713, 1215, 2072
Cfr10I	RCCGGY	1 cut(s)	1880
Cfr13I	GGNCC	2 cut(s)	296, 866
ClaI	ATCGAT	1 cut(s)	1286
CseI	GACGC	2 cut(s)	581, 705
Csp6I	GTAC	4 cut(s)	1026, 1186, 1720, 2030
CspAI	ACCGGT	1 cut(s)	1880
CviQI	GTAC	4 cut(s)	1026, 1186, 1720, 2030
DdeI	CTNAG	9 cut(s)	347, 484, 489, 516, 614, 802, 1246, 1838, 1968
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	622, 1341
Eam1104I	CTCTTC	2 cut(s)	327, 628
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	2 cut(s)	327, 628
Eco130I	CCWWGG	3 cut(s)	247, 767, 1651
Eco31I	GGTCTC	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	1796
Eco47I	GGWCC	2 cut(s)	296, 866
Eco47III	AGCGCT	1 cut(s)	2071
Eco57I	CTGAAG	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	4 cut(s)	271, 1267, 1483, 1758
EcoRV	GATATC	1 cut(s)	1796
EcoT14I	CCWWGG	3 cut(s)	247, 767, 1651
EcoT22I	ATGCAT	1 cut(s)	1756
ErhI	CCWWGG	3 cut(s)	247, 767, 1651
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	1 cut(s)	852
FauI	CCCGC	3 cut(s)	692, 877, 1126
FauNDI	CATATG	2 cut(s)	409, 424
FbaI	TGATCA	1 cut(s)	970
FblI	GTMKAC	2 cut(s)	317, 477
Fnu4HI	GCNGC	4 cut(s)	494, 714, 879, 1871
FokI	GGATG	3 cut(s)	60, 698, 773
Fsp4HI	GCNGC	4 cut(s)	494, 714, 879, 1871
FspBI	CTAG	4 cut(s)	404, 542, 1241, 1916
GlaI	GCGC	3 cut(s)	712, 1214, 2071
GluI	GCNGC	4 cut(s)	494, 714, 879, 1871
GsuI	CTGGAG	1 cut(s)	1506
HaeII	RGCGCY	1 cut(s)	2073
HaeIII	GGCC	2 cut(s)	624, 1343
HapII	CCGG	4 cut(s)	145, 161, 1291, 1881
HgaI	GACGC	2 cut(s)	581, 705
HhaI	GCGC	3 cut(s)	713, 1215, 2072
Hin1I	GRCGYC	2 cut(s)	573, 716
Hin6I	GCGC	3 cut(s)	711, 1213, 2070
HinP1I	GCGC	3 cut(s)	711, 1213, 2070
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	9 cut(s)	125, 345, 506, 636, 999, 1480, 1647, 1677, 2038
HpaII	CCGG	4 cut(s)	145, 161, 1291, 1881
HphI	GGTGA	7 cut(s)	185, 223, 631, 1055, 1856, 2047, 2075
Hpy166II	GTNNAC	7 cut(s)	192, 318, 478, 580, 1180, 1553, 1847
Hpy188I	TCNGA	8 cut(s)	32, 523, 805, 937, 1054, 1800, 1817, 1831
Hpy188III	TCNNGA	8 cut(s)	53, 98, 326, 949, 974, 1462, 1703, 1960
Hpy8I	GTNNAC	7 cut(s)	192, 318, 478, 580, 1180, 1553, 1847
HpyAV	CCTTC	6 cut(s)	139, 164, 309, 1093, 1368, 1372
HpyCH4III	ACNGT	3 cut(s)	112, 463, 856
HpyCH4IV	ACGT	1 cut(s)	1503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	878, 1134, 1559, 2023
HpyF3I	CTNAG	9 cut(s)	347, 484, 489, 516, 614, 802, 1246, 1838, 1968
HpySE526I	ACGT	1 cut(s)	1503
Hsp92I	GRCGYC	2 cut(s)	573, 716
HspAI	GCGC	3 cut(s)	711, 1213, 2070
Ksp22I	TGATCA	1 cut(s)	970
LmnI	GCTCC	2 cut(s)	1487, 2014
Lsp1109I	GCAGC	3 cut(s)	480, 890, 1882
LweI	GCATC	5 cut(s)	34, 319, 430, 1560, 1614
MaeI	CTAG	4 cut(s)	404, 542, 1241, 1916
MaeII	ACGT	1 cut(s)	1503
MaeIII	GTNAC	9 cut(s)	68, 163, 211, 427, 637, 1199, 1504, 1883, 2063
MflI	RGATCY	4 cut(s)	14, 375, 1169, 1900
MhlI	GDGCHC	2 cut(s)	541, 1555
MlsI	TGGCCA	2 cut(s)	624, 1343
MluCI	AATT	5 cut(s)	497, 738, 777, 1470, 1778
MluNI	TGGCCA	2 cut(s)	624, 1343
MlyI	GAGTC	3 cut(s)	339, 500, 645
MmeI	TCCRAC	3 cut(s)	55, 501, 941
Mox20I	TGGCCA	2 cut(s)	624, 1343
Mph1103I	ATGCAT	1 cut(s)	1756
MroXI	GAANNNNTTC	2 cut(s)	810, 1822
MscI	TGGCCA	2 cut(s)	624, 1343
MseI	TTAA	3 cut(s)	458, 1400, 1469
MslI	CAYNNNNRTG	5 cut(s)	57, 63, 1278, 1413, 1749
Msp20I	TGGCCA	2 cut(s)	624, 1343
MspA1I	CMGCKG	3 cut(s)	493, 1873, 1967
MspI	CCGG	4 cut(s)	145, 161, 1291, 1881
MspR9I	CCNGG	5 cut(s)	273, 1269, 1292, 1485, 1760
Mva1269I	GAATGC	1 cut(s)	1754
MvaI	CCWGG	4 cut(s)	273, 1269, 1485, 1760
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	878, 1134, 1559, 2023
NciI	CCSGG	1 cut(s)	1292
NdeI	CATATG	2 cut(s)	409, 424
NlaIV	GGNNCC	5 cut(s)	149, 297, 868, 1455, 2010
NmuCI	GTSAC	5 cut(s)	163, 211, 427, 637, 2063
NsiI	ATGCAT	1 cut(s)	1756
NspI	RCATGY	1 cut(s)	1186
PagI	TCATGA	1 cut(s)	97
PciI	ACATGT	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	1754
PdmI	GAANNNNTTC	2 cut(s)	810, 1822
PfeI	GAWTC	6 cut(s)	125, 999, 1480, 1647, 1677, 2038
PflMI	CCANNNNNTGG	1 cut(s)	2060
PfoI	TCCNGGA	2 cut(s)	1267, 1483
PinAI	ACCGGT	1 cut(s)	1880
PkrI	GCNGC	4 cut(s)	495, 715, 880, 1872
PleI	GAGTC	3 cut(s)	339, 500, 644
PpsI	GAGTC	3 cut(s)	339, 500, 644
PpuMI	RGGWCCY	1 cut(s)	296
PscI	ACATGT	1 cut(s)	1182
PshAI	GACNNNNGTC	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	2076
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	4 cut(s)	271, 1267, 1483, 1758
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	4 cut(s)	271, 1267, 1483, 1758
PspN4I	GGNNCC	5 cut(s)	149, 297, 868, 1455, 2010
PspPI	GGNCC	2 cut(s)	296, 866
PspPPI	RGGWCCY	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	236, 880
PsuI	RGATCY	4 cut(s)	14, 375, 1169, 1900
PvuII	CAGCTG	2 cut(s)	493, 1873
RsaI	GTAC	4 cut(s)	1027, 1187, 1721, 2031
RsaNI	GTAC	4 cut(s)	1026, 1186, 1720, 2030
RseI	CAYNNNNRTG	5 cut(s)	57, 63, 1278, 1413, 1749
SaqAI	TTAA	3 cut(s)	458, 1400, 1469
SatI	GCNGC	4 cut(s)	494, 714, 879, 1871
Sau96I	GGNCC	2 cut(s)	296, 866
ScaI	AGTACT	1 cut(s)	2031
SchI	GAGTC	3 cut(s)	339, 500, 645
ScrFI	CCNGG	5 cut(s)	273, 1269, 1292, 1485, 1760
SduI	GDGCHC	2 cut(s)	541, 1555
SfaNI	GCATC	5 cut(s)	34, 319, 430, 1560, 1614
SfcI	CTRYAG	2 cut(s)	232, 876
SinI	GGWCC	2 cut(s)	296, 866
SmiMI	CAYNNNNRTG	5 cut(s)	57, 63, 1278, 1413, 1749
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	5 cut(s)	497, 738, 777, 1470, 1778
SsiI	CCGC	6 cut(s)	699, 713, 870, 1133, 1671, 1965
SspMI	CTAG	4 cut(s)	404, 542, 1241, 1916
StyD4I	CCNGG	5 cut(s)	271, 1267, 1290, 1483, 1758
StyI	CCWWGG	3 cut(s)	247, 767, 1651
TaaI	ACNGT	3 cut(s)	112, 463, 856
TaiI	ACGT	1 cut(s)	1506
TaqI	TCGA	3 cut(s)	1195, 1286, 1936
TasI	AATT	5 cut(s)	497, 738, 777, 1470, 1778
TatI	WGTACW	2 cut(s)	1185, 2029
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	6 cut(s)	125, 999, 1480, 1647, 1677, 2038
Tru1I	TTAA	3 cut(s)	458, 1400, 1469
Tru9I	TTAA	3 cut(s)	458, 1400, 1469
TscAI	CASTG	5 cut(s)	172, 622, 1482, 1525, 1846
TseFI	GTSAC	5 cut(s)	163, 211, 427, 637, 2063
TseI	GCWGC	3 cut(s)	493, 878, 1870
Tsp45I	GTSAC	5 cut(s)	163, 211, 427, 637, 2063
TspDTI	ATGAA	9 cut(s)	75, 86, 702, 1314, 1327, 1391, 1791, 1945, 1991
TspGWI	ACGGA	3 cut(s)	1144, 1165, 1993
TspRI	CASTG	5 cut(s)	172, 622, 1482, 1525, 1846
Van91I	CCANNNNNTGG	1 cut(s)	2060
VneI	GTGCAC	1 cut(s)	1551
VpaK11BI	GGWCC	2 cut(s)	296, 866
XapI	RAATTY	1 cut(s)	1778
XceI	RCATGY	1 cut(s)	1186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	317, 477
XmnI	GAANNNNTTC	2 cut(s)	810, 1822
XspI	CTAG	4 cut(s)	404, 542, 1241, 1916
ZrmI	AGTACT	1 cut(s)	2031
Zsp2I	ATGCAT	1 cut(s)	1756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.