Rh2AG499700

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
72227970 .. 72233853
5884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG499700.1

Sequence Viewer

Length: 1146 bp
ATGGCTTCAGGTAGATCTCATTCCAGTCTCCGACACGACATTGATGCTACTCACGAACAGGAATACCATCCCAGTAATCCCACACCAGTTCTTGAGCATGAATATTGTTACCATCCCAGTAATCCTACACCAGTTCTTGAGATTGAAACAGTTGCCAGAGGAGATTCCTTCCAAAATCAAAACCGGAACCATGTAGTTCCGGTCACTGTAGGTGATGAGGGTGTTTCGTTGACATGGCAAGATTTGTGGGTGACGGTACAGGGAAGAACCTGCAGATCAATCCTCCAAGGGCTAACTGGTTATGCCACACCAGGACAGCTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGACTCGGTTCAAACACAAGGCAAGCAGGGGAGATCCTAATCAATGGACATAAACAAGCACTAGCATATGGAACTTCTGCATATGTGACACAAGATGATGCTCTAATCACAACATTAACAGTTGAAGAAGCCGTATACTACTCAGCTCAGCTGCAATTACCAGACTCTATGTCTAAGTCGGAGAAGAAAGAGAGAGCACTAGCGACAATAAGAGAGATGGGTTTGCAAGACGCCGTGAACACGAGGATTGGAGGTTGGGGAGACAAAGGTCTCAGTGGTGGCCAAAAGAGAAGAGTCACCATTTGCATTGAGCTTCTTACACGACCAAAGCTTCTCTTTTTGGATGAACCCACAAGCGGGCTTGATAGCGCGGCGTCTTACTATGTGATGAGCAGAATTGCAAATCTTGGTCATAAATCTTCTCCAAGGACTATAATTGCTTCCATCCATCAGCCAAGCTCAGAAGTCTTTCAACTCTTTGACAATCTTTGTCTGCTGTCTTCGGGTAAAACTGTATATTTTGGTCCCGCTTCTGCAGCGAATGAGTTTTTTGCTTCAAGTGGTTTCCCATGTCCAACTCTCCAAAATCCATCAGATCACTTCCTCAAGAAAATAAACAAAGATTTTGATCAGGACATTGAGCAAGGGAAAGCTGGAATCACAACCACAGAGGAAGCCATTGATACTCTAATAAACTCTTACAAATCATCTGAAAGTTATCACCAACTTCAAAGACATATAGCTGAACTACATAAGAAGGTATAA

Protein Analysis

381

Amino Acids

41.68

Weight (kDa)

6.06

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 96 - 246 2.1e-27 ABC transporter
ABC2_membrane_7 PF19055 277 - 330 9.4e-10 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccI GTMKAC 2 cut(s) 356, 516
AccII CGCG 1 cut(s) 752
AciI CCGC 3 cut(s) 738, 752, 909
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 661
AcyI GRCGYC 2 cut(s) 612, 755
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 737, 738
AgsI TTSAA 6 cut(s) 146, 393, 506, 854, 939, 1112
AhdI GACNNNNNGTC 1 cut(s) 550
AjnI CCWGG 1 cut(s) 310
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 8 cut(s) 319, 527, 532, 694, 712, 840, 1034, 1124
AluI AGCT 8 cut(s) 319, 527, 532, 694, 712, 840, 1034, 1124
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 4 cut(s) 32, 376, 636, 656
AlwI GGATC 1 cut(s) 409
AoxI GGCC 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 532, 917
Asp700I GAANNNNTTC 1 cut(s) 849
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 2 cut(s) 335, 905
AsuHPI GGTGA 4 cut(s) 224, 262, 670, 1094
AvaII GGWCC 2 cut(s) 335, 905
BalI TGGCCA 1 cut(s) 663
BauI CACGAG 1 cut(s) 622
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 519, 929
BccI CCATC 6 cut(s) 75, 120, 592, 833, 837, 979
BceAI ACGGC 2 cut(s) 497, 599
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 4 cut(s) 32, 376, 636, 656
BfaI CTAG 2 cut(s) 443, 581
BfmI CTRYAG 3 cut(s) 207, 271, 915
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 14
BisI GCNGC 3 cut(s) 533, 753, 918
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 3 cut(s) 534, 754, 919
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 335, 905
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 335, 905
BmiI GGNNCC 3 cut(s) 188, 336, 907
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 2 cut(s) 66, 111
BmsI GCATC 3 cut(s) 34, 358, 469
BmuI ACTGGG 2 cut(s) 66, 111
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 3 cut(s) 113, 158, 971
BsaBI GATNNNNATC 2 cut(s) 419, 1008
BsaHI GRCGYC 2 cut(s) 612, 755
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 286, 806
BsaWI WCCGGW 2 cut(s) 183, 199
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 737, 738
Bse1I ACTGG 6 cut(s) 24, 72, 86, 117, 131, 301
Bse8I GATNNNNATC 2 cut(s) 419, 1008
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 286, 806
BseGI GGATG 4 cut(s) 67, 112, 730, 825
BseJI GATNNNNATC 2 cut(s) 419, 1008
BseLI CCNNNNNNNGG 2 cut(s) 737, 738
BseMII CTCAG 4 cut(s) 537, 542, 667, 855
BseNI ACTGG 6 cut(s) 24, 72, 86, 117, 131, 301
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 519, 929
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 2 cut(s) 184, 200
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 2 cut(s) 737, 738
BsmAI GTCTC 4 cut(s) 32, 376, 636, 656
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 1 cut(s) 663
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 5 cut(s) 14, 275, 414, 976, 1009
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 3 cut(s) 738, 752, 909
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 4 cut(s) 536, 541, 666, 854
BspFNI CGCG 1 cut(s) 752
BspLI GGNNCC 3 cut(s) 188, 336, 907
BspMAI CTGCAG 2 cut(s) 275, 919
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 656
BsrI ACTGG 6 cut(s) 24, 72, 86, 117, 131, 301
BssECI CCNNGG 2 cut(s) 286, 806
BssMI GATC 5 cut(s) 14, 275, 414, 976, 1009
BssNAI GTATAC 1 cut(s) 517
BssNI GRCGYC 2 cut(s) 612, 755
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 286, 806
Bst1107I GTATAC 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 622
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 5 cut(s) 151, 208, 256, 502, 895
Bst6I CTCTTC 2 cut(s) 366, 667
BstACI GRCGYC 2 cut(s) 612, 755
BstC8I GCNNGC 2 cut(s) 405, 740
BstDEI CTNAG 5 cut(s) 523, 528, 555, 653, 841
BstF5I GGATG 4 cut(s) 67, 112, 730, 825
BstFNI CGCG 1 cut(s) 752
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 5 cut(s) 17, 278, 417, 979, 1012
BstMAI GTCTC 4 cut(s) 32, 376, 636, 656
BstMBI GATC 5 cut(s) 14, 275, 414, 976, 1009
BstMWI GCNNNNNNNGC 1 cut(s) 917
BstNI CCWGG 1 cut(s) 312
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 3 cut(s) 207, 271, 915
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 2 cut(s) 519, 929
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 2 cut(s) 14, 414
BstYI RGATCY 2 cut(s) 14, 414
BstZ17I GTATAC 1 cut(s) 517
BsuRI GGCC 1 cut(s) 663
BtsCI GGATG 4 cut(s) 67, 112, 730, 825
BtsIMutI CAGTG 2 cut(s) 204, 661
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 405, 740
CfoI GCGC 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 335, 905
CseI GACGC 2 cut(s) 620, 744
Csp6I GTAC 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 4 cut(s) 98, 191, 234, 951
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 5 cut(s) 523, 528, 555, 653, 841
DpnI GATC 5 cut(s) 16, 277, 416, 978, 1011
DpnII GATC 5 cut(s) 14, 275, 414, 976, 1009
DriI GACNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 366, 667
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 2 cut(s) 366, 667
Eco130I CCWWGG 2 cut(s) 286, 806
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 335, 905
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 286, 806
ErhI CCWWGG 2 cut(s) 286, 806
FaeI CATG 4 cut(s) 101, 194, 237, 954
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FaqI GGGAC 1 cut(s) 891
FatI CATG 4 cut(s) 97, 190, 233, 950
FauI CCCGC 2 cut(s) 731, 916
FauNDI CATATG 2 cut(s) 448, 463
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 2 cut(s) 356, 516
Fnu4HI GCNGC 3 cut(s) 533, 753, 918
FokI GGATG 4 cut(s) 54, 99, 737, 812
Fsp4HI GCNGC 3 cut(s) 533, 753, 918
FspBI CTAG 2 cut(s) 443, 581
GlaI GCGC 1 cut(s) 751
GluI GCNGC 3 cut(s) 533, 753, 918
HaeIII GGCC 1 cut(s) 663
HapII CCGG 2 cut(s) 184, 200
HgaI GACGC 2 cut(s) 620, 744
HhaI GCGC 1 cut(s) 752
Hin1I GRCGYC 2 cut(s) 612, 755
Hin1II CATG 4 cut(s) 101, 194, 237, 954
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 5 cut(s) 164, 384, 545, 675, 1038
HpaII CCGG 2 cut(s) 184, 200
HphI GGTGA 4 cut(s) 224, 262, 670, 1094
Hpy166II GTNNAC 4 cut(s) 231, 357, 517, 619
Hpy188I TCNGA 5 cut(s) 32, 562, 844, 976, 1093
Hpy188III TCNNGA 6 cut(s) 53, 92, 137, 365, 988, 1013
Hpy8I GTNNAC 4 cut(s) 231, 357, 517, 619
HpyAV CCTTC 3 cut(s) 178, 348, 1132
HpyCH4III ACNGT 5 cut(s) 151, 208, 256, 502, 895
HpyCH4V TGCA 7 cut(s) 273, 461, 535, 607, 687, 782, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 917
HpyF3I CTNAG 5 cut(s) 523, 528, 555, 653, 841
Hsp92I GRCGYC 2 cut(s) 612, 755
Hsp92II CATG 4 cut(s) 101, 194, 237, 954
HspAI GCGC 1 cut(s) 750
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 5 cut(s) 14, 275, 414, 976, 1009
Lsp1109I GCAGC 2 cut(s) 519, 929
LweI GCATC 3 cut(s) 34, 358, 469
MaeI CTAG 2 cut(s) 443, 581
MaeIII GTNAC 5 cut(s) 107, 202, 250, 466, 676
MalI GATC 5 cut(s) 16, 277, 416, 978, 1011
MboI GATC 5 cut(s) 14, 275, 414, 976, 1009
MboII GAAGA 7 cut(s) 276, 353, 518, 577, 684, 792, 873
MflI RGATCY 2 cut(s) 14, 414
MhlI GDGCHC 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 3 cut(s) 536, 777, 816
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 3 cut(s) 378, 539, 684
MmeI TCCRAC 3 cut(s) 55, 540, 980
MnlI CCTC 7 cut(s) 152, 211, 293, 618, 626, 995, 1045
Mox20I TGGCCA 1 cut(s) 663
MroXI GAANNNNTTC 1 cut(s) 849
MscI TGGCCA 1 cut(s) 663
MseI TTAA 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 2 cut(s) 184, 200
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 1 cut(s) 917
NdeI CATATG 2 cut(s) 448, 463
NdeII GATC 5 cut(s) 14, 275, 414, 976, 1009
NlaIII CATG 4 cut(s) 101, 194, 237, 954
NlaIV GGNNCC 3 cut(s) 188, 336, 907
NmuCI GTSAC 4 cut(s) 202, 250, 466, 676
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 164, 1038
PkrI GCNGC 3 cut(s) 534, 754, 919
PleI GAGTC 3 cut(s) 378, 539, 683
PpsI GAGTC 3 cut(s) 378, 539, 683
PpuMI RGGWCCY 1 cut(s) 335
PshAI GACNNNNGTC 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 188, 336, 907
PspPI GGNCC 2 cut(s) 335, 905
PspPPI RGGWCCY 1 cut(s) 335
PstI CTGCAG 2 cut(s) 275, 919
PsuI RGATCY 2 cut(s) 14, 414
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 3 cut(s) 533, 753, 918
Sau3AI GATC 5 cut(s) 14, 275, 414, 976, 1009
Sau96I GGNCC 2 cut(s) 335, 905
SchI GAGTC 3 cut(s) 378, 539, 684
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 3 cut(s) 34, 358, 469
SfcI CTRYAG 3 cut(s) 207, 271, 915
SinI GGWCC 2 cut(s) 335, 905
SmlI CTYRAG 3 cut(s) 92, 137, 986
SmoI CTYRAG 3 cut(s) 92, 137, 986
Sse9I AATT 3 cut(s) 536, 777, 816
SsiI CCGC 3 cut(s) 738, 752, 909
SspI AATATT 1 cut(s) 104
SspMI CTAG 2 cut(s) 443, 581
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 286, 806
TaaI ACNGT 5 cut(s) 151, 208, 256, 502, 895
TasI AATT 3 cut(s) 536, 777, 816
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 2 cut(s) 164, 1038
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 2 cut(s) 211, 661
TseFI GTSAC 4 cut(s) 202, 250, 466, 676
TseI GCWGC 2 cut(s) 532, 917
Tsp45I GTSAC 4 cut(s) 202, 250, 466, 676
TspDTI ATGAA 2 cut(s) 114, 741
TspRI CASTG 2 cut(s) 211, 661
VpaK11BI GGWCC 2 cut(s) 335, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 356, 516
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 2 cut(s) 443, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.