Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002401.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

124088 .. 124567

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002401.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggagtcttcttctccagataactttccaagatgggcaccaagtccaagcccctcgagagtattactatcacctgtggaagacaccaagatcaagtcgaatgctgctcgtgattctgcagagaatggcttatccttatcatgttctagcatggaaaggattttcccatttagcattggattcaaaagcactgctactactagtactgcttatgcttctgcggttgaaaagttactagaagctgaatgtgcttacgttaaaagcagtggtactactgatattgaaattgcatcaagaaagaatggtatttctttgacatgggaggacttgtgggttggagtagcagatcggaaaagggagcagcgaatgattttgcagaagcttaccgggtttgctcaacctggtgaggttttggctattatgggtccttctggctgtggtaaatcaacccttttggatgctttagcaggtacatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

159

Amino Acids

17.04

Weight (kDa)

5.55

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	205, 271, 472
AgsI	TTSAA	3 cut(s)	184, 227, 284
AhlI	ACTAGT	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	2 cut(s)	242, 382
AluI	AGCT	2 cut(s)	242, 382
Ama87I	CYCGRG	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	104, 361
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	63, 416
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	91, 373
BccI	CCATC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	3 cut(s)	147, 201, 236
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	105, 362
BlsI	GCNGC	2 cut(s)	106, 363
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	388, 402
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	39, 426
BmrFI	CCNGG	2 cut(s)	388, 402
BmsI	GCATC	2 cut(s)	299, 448
BpiI	GAAGAC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
BseBI	CCWGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	463
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	91, 373
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	90, 346
BspACI	CCGC	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	39, 426
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	37
BssMI	GATC	2 cut(s)	90, 346
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	93, 349
BstMBI	GATC	2 cut(s)	90, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	386, 400
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	91, 373
BstV2I	GAAGAC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	2 cut(s)	189, 271
BtsIMutI	CAGTG	2 cut(s)	189, 271
BveI	ACCTGC	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	425
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	204, 270, 471
CviAII	CATG	3 cut(s)	141, 151, 318
CviJI	RGCY	6 cut(s)	51, 129, 242, 382, 416, 435
CviKI_1	RGCY	6 cut(s)	51, 129, 242, 382, 416, 435
CviQI	GTAC	3 cut(s)	204, 270, 471
DpnI	GATC	2 cut(s)	92, 348
DpnII	GATC	2 cut(s)	90, 346
Eco47I	GGWCC	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	400
FaeI	CATG	3 cut(s)	144, 154, 321
FaiI	YATR	6 cut(s)	142, 152, 213, 319, 422, 475
FatI	CATG	3 cut(s)	140, 150, 317
Fnu4HI	GCNGC	2 cut(s)	105, 362
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	105, 362
FspBI	CTAG	3 cut(s)	147, 201, 236
GluI	GCNGC	2 cut(s)	105, 362
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	3 cut(s)	144, 154, 321
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	3 cut(s)	5, 113, 180
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	2 cut(s)	63, 416
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	4 cut(s)	17, 57, 110, 294
HpyAV	CCTTC	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	119, 290, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	144, 154, 321
Kzo9I	GATC	2 cut(s)	90, 346
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	7 cut(s)	30, 87, 387, 400, 414, 417, 453
Lsp1109I	GCAGC	2 cut(s)	91, 373
LweI	GCATC	2 cut(s)	299, 448
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	3 cut(s)	147, 201, 236
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	92, 348
MboI	GATC	2 cut(s)	90, 346
MboII	GAAGA	2 cut(s)	3, 92
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	3 cut(s)	64, 316, 400
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	388, 402
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	90, 346
NlaIII	CATG	3 cut(s)	144, 154, 321
NlaIV	GGNNCC	2 cut(s)	39, 426
PaeR7I	CTCGAG	1 cut(s)	55
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	113, 180
PkrI	GCNGC	2 cut(s)	106, 363
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	39, 426
PspPI	GGNCC	1 cut(s)	425
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	205, 271, 472
RsaNI	GTAC	3 cut(s)	204, 270, 471
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	105, 362
Sau3AI	GATC	2 cut(s)	90, 346
Sau96I	GGNCC	1 cut(s)	425
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	388, 402
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	7 cut(s)	76, 244, 258, 384, 403, 411, 472
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	299, 448
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	3 cut(s)	147, 201, 236
StyD4I	CCNGG	2 cut(s)	386, 400
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	56, 98
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	113, 180
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	196, 271
TseI	GCWGC	2 cut(s)	104, 361
TspRI	CASTG	2 cut(s)	196, 271
VpaK11BI	GGWCC	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	3 cut(s)	147, 201, 236
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.