Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

66865167 .. 66870040

Gene Structure 4874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGGCTTCAGTAACATCTCATTCTAATGTTAAGCTTATTAGTGCAATTCATGAAAGTGAAAATGGTTACCATCCCAGTAGTCCCACAGCAGTTGCGGAGGTTGAAACAGTTGCTAAAGGAGATGCCGCAGTGAAGGAAGACTCCATTCAAAACCGAAACCATATAAAGGTTCCACTAATCGAAAATGATGAGGGTATTTTCTTGACATGGGAAGATTTGTGGGTGAGAGTAGCTTCAAATTTAAATGAGGGAGAAAAGCATAGTAGTGATGGAAGAAGCTGCAGATCAATCCTCCGAGGGGTAACTGGTTATGCCAAACCAGGGCAGCTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCAGGTAGAATGAGTTCAAACACAAGGCAAACAGGGGATATCCGTATAAATGGACATAAACAAGCACTAGCTTATGGAACTTCGGCATATGTGACACAAGATGACACTCTAATGACCACATTAACGGTGAAAGAAGCTGTATACTACTCTGCTCAACTGCAGCTACCAGAGTCAATGTCTAAGTCAAAGAAGCAAGAGAGAGCACAAGTGACCATAAGAGAGATGGGTTTGCAAAATGCCATGAACACAAGGATCGGAGGTTGGGGAGCCAAGGGCCTCAGTGGTGGCGAAAAGAGAAGAGTTAGTATCTGCATTGAGCTTCTTACACAACCAAAACTTCTCTTTCTGGATGAACCAACAAGCGGACTTGACAGTGCTGCGTCTTTTTATGTGATGAGCAGAATTGCCAATCTTAGTCATAAATCGTCTCAGAGGACCATAGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCGACTCTTTGACAATCTTTGTCTTCTGTCTTCCGGTGAAACTGTATATTTTGGTCCTGCTTCTGCAGCGAATGAATTTTTCGCTGCAAGTGGTTTTCCATGCCCAACTTTCCTGTATCCATCAGATCACTTCCTCAAGACCATAAACAAAGATTTTGAGCTGGACATTGAGCAAGGTATAGCCGGAAGAACACCCACAGAGGGAGCTATTCATACTCTAATGCAGTCATATAAAACATCTGAAAGTTATCACCAACTCCAAAGGCAAATAGCTGAAATATTGAAGAAGGATTGTGAAGCATTAGAAAAGAGAAGCCCTAGATCCTTTGTGAATGCTGGCTTTGTCACACAATGTCTTGTACTTACAAGAAGATCCTTTGTGAACATGTACCGAGATCGAGGCTACTACTGGTTGCGCCTTTTCATCTACATAGCCCTAGCTGCCGGCCTAGGCACTATCTATTATGATCTTGGATACACTTATGCATCAATTCAGGCACGAGGCTCTCTACTAGCATTTGTGGCTTCATTTCTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTGAATGGGCACTATGGTGTTAGTTCATTCGTCTTCGCCAACATATTTTCTTCGATGCCTTTGTTGATGTTGATTTCATTGATTCCTGGAGCAATAACCTACTATCTTGCTGGACTTCACAGTGGATTTGAACACTTCTTCTACTTTGCCTCTGCACTATATGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATCGTGCCGAATTTCCTTATGGGCATAATAGTTGGTTCTGGATTGCAAGGGATTATGTTGTTATGCGGCGGATTCTTCCGGCTACCAAATGATCTTCCGGATCTTGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTGAAGGAACAGCGTTTCCGAATGATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCGACAGCATTTTGAGAGATATATGGCAGGTGGAAATGGGTTACTCTAAATGGGTTGATCTTGGTGTCTTGCTAGGAATGATAGTTCTGTATCGAGCTTTGTTCTTAGTTATCATCAAGATCACTGAGAAAAGGAAAACTATTACCTTTGCTCTTCTGTCCGTCGCTCCGAAGCAAAGCATGCAAGTATTGGTGAATCCCTCCTCTACTAGAGCCAGTAGAATGGTAACAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

713

Amino Acids

79.15

Weight (kDa)

8.5

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	99 - 249	3.5e-28	ABC transporter
ABC2_membrane_7	PF19055	280 - 336	1.8e-08	ABC-2 type transporter
ABC2_membrane	PF01061	403 - 615	2.7e-42	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1924
Acc36I	ACCTGC	2 cut(s)	377, 1924
AccI	GTMKAC	1 cut(s)	525
AccIII	TCCGGA	1 cut(s)	1765
AciI	CCGC	5 cut(s)	95, 126, 747, 1734, 1737
AclWI	GGATC	4 cut(s)	644, 1176, 1227, 1776
AcoI	YGGCCR	1 cut(s)	1404
AcsI	RAATTY	4 cut(s)	238, 935, 1678, 1841
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	3 cut(s)	1221, 1250, 1793
AfiI	CCNNNNNNNGG	6 cut(s)	166, 298, 321, 746, 1061, 1413
AflIII	ACRYGT	1 cut(s)	1245
AgsI	TTSAA	8 cut(s)	104, 149, 237, 402, 1144, 1451, 1592, 1847
AjnI	CCWGG	3 cut(s)	319, 1546, 1821
AleI	CACNNNNGTG	1 cut(s)	1476
AloI	GAACNNNNNNTCC	4 cut(s)	1843, 1875, 1974, 2006
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	4 cut(s)	644, 1176, 1227, 1776
Aor13HI	TCCGGA	1 cut(s)	1765
AoxI	GGCC	3 cut(s)	658, 1306, 1404
ApeKI	GCWGC	7 cut(s)	279, 325, 544, 761, 926, 944, 1301
ApoI	RAATTY	4 cut(s)	238, 935, 1678, 1841
Asp700I	GAANNNNTTC	2 cut(s)	397, 858
AspA2I	CCTAGG	1 cut(s)	1309
AspLEI	GCGC	1 cut(s)	1278
AspS9I	GGNCC	4 cut(s)	344, 658, 819, 914
AsuHPI	GGTGA	5 cut(s)	235, 523, 908, 1103, 2110
AvaII	GGWCC	3 cut(s)	344, 819, 914
AvrII	CCTAGG	1 cut(s)	1309
BaeGI	GKGCMC	1 cut(s)	1473
BalI	TGGCCA	1 cut(s)	1406
BauI	CACGAG	1 cut(s)	1359
BbsI	GAAGAC	5 cut(s)	144, 875, 882, 1440, 1486
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	7 cut(s)	266, 337, 556, 748, 931, 938, 1288
BccI	CCATC	6 cut(s)	78, 263, 601, 842, 846, 988
BcgI	CGANNNNNNTGC	2 cut(s)	1654, 1688
BciT130I	CCWGG	3 cut(s)	321, 1548, 1823
BciVI	GTATCC	2 cut(s)	987, 1328
BclI	TGATCA	1 cut(s)	1870
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	8 cut(s)	452, 846, 1179, 1298, 1310, 1373, 1979, 2115
BfmI	CTRYAG	3 cut(s)	280, 542, 924
BfuAI	ACCTGC	2 cut(s)	377, 1924
BfuI	GTATCC	2 cut(s)	987, 1328
BisI	GCNGC	9 cut(s)	126, 280, 326, 545, 762, 927, 945, 1302, 1735
BlnI	CCTAGG	1 cut(s)	1309
BlsI	GCNGC	9 cut(s)	127, 281, 327, 546, 763, 928, 946, 1303, 1736
Bme1390I	CCNGG	3 cut(s)	321, 1548, 1823
Bme18I	GGWCC	3 cut(s)	344, 819, 914
BmgT120I	GGNCC	4 cut(s)	344, 658, 819, 914
BmiI	GGNNCC	3 cut(s)	171, 345, 652
BmrFI	CCNGG	3 cut(s)	321, 1548, 1823
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	6 cut(s)	112, 367, 1355, 1506, 1623, 1677
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	5 cut(s)	144, 875, 882, 1440, 1486
BpmI	CTGGAG	1 cut(s)	1569
BpuEI	CTTGAG	1 cut(s)	980
BsaJI	CCNNGG	5 cut(s)	295, 320, 654, 1309, 1822
BsaWI	WCCGGW	2 cut(s)	893, 1765
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 298, 321, 746, 1061, 1413
Bse118I	RCCGGY	1 cut(s)	1304
Bse1I	ACTGG	4 cut(s)	75, 310, 1274, 2121
BseAI	TCCGGA	1 cut(s)	1765
BseBI	CCWGG	3 cut(s)	321, 1548, 1823
BseDI	CCNNGG	5 cut(s)	295, 320, 654, 1309, 1822
BseGI	GGATG	3 cut(s)	70, 739, 834
BseLI	CCNNNNNNNGG	6 cut(s)	166, 298, 321, 746, 1061, 1413
BseMII	CTCAG	3 cut(s)	676, 827, 2022
BseNI	ACTGG	4 cut(s)	75, 310, 1274, 2121
BseRI	GAGGAG	1 cut(s)	2098
BseSI	GKGCMC	1 cut(s)	1473
BseXI	GCAGC	7 cut(s)	266, 337, 556, 748, 931, 938, 1288
BsgI	GTGCAG	1 cut(s)	1599
BshFI	GGCC	3 cut(s)	660, 1308, 1406
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	5 cut(s)	894, 1044, 1305, 1747, 1766
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	6 cut(s)	166, 298, 321, 746, 1061, 1413
BsmAI	GTCTC	1 cut(s)	816
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	2 cut(s)	1198, 1817
BsnI	GGCC	3 cut(s)	660, 1308, 1406
Bsp1286I	GDGCHC	2 cut(s)	589, 1473
Bsp13I	TCCGGA	1 cut(s)	1765
BspACI	CCGC	5 cut(s)	95, 126, 747, 1734, 1737
BspANI	GGCC	3 cut(s)	660, 1308, 1406
BspCNI	CTCAG	3 cut(s)	675, 826, 2023
BspEI	TCCGGA	1 cut(s)	1765
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	171, 345, 652
BspMAI	CTGCAG	3 cut(s)	284, 546, 928
BspMI	ACCTGC	2 cut(s)	377, 1924
BspPI	GGATC	4 cut(s)	644, 1176, 1227, 1776
BspQI	GCTCTTC	1 cut(s)	2064
BsrFI	RCCGGY	1 cut(s)	1304
BsrI	ACTGG	4 cut(s)	75, 310, 1274, 2121
BssAI	RCCGGY	1 cut(s)	1304
BssECI	CCNNGG	5 cut(s)	295, 320, 654, 1309, 1822
BssNAI	GTATAC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	1359
BssT1I	CCWWGG	2 cut(s)	654, 1309
Bst1107I	GTATAC	1 cut(s)	526
Bst2BI	CACGAG	1 cut(s)	1359
Bst2UI	CCWGG	3 cut(s)	321, 1548, 1823
Bst4CI	ACNGT	5 cut(s)	109, 511, 758, 904, 1583
Bst6I	CTCTTC	3 cut(s)	375, 676, 2064
BstAPI	GCANNNNNTGC	2 cut(s)	1622, 2086
BstC8I	GCNNGC	5 cut(s)	1198, 1306, 1627, 1666, 2087
BstDEI	CTNAG	9 cut(s)	564, 662, 797, 813, 1877, 1893, 1901, 2011, 2031
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	70, 739, 834
BstHHI	GCGC	1 cut(s)	1278
BstMAI	GTCTC	1 cut(s)	816
BstMWI	GCNNNNNNNGC	5 cut(s)	926, 1301, 1382, 1622, 2086
BstNI	CCWGG	3 cut(s)	321, 1548, 1823
BstNSI	RCATGY	2 cut(s)	1249, 2089
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	319, 1546, 1821
BstSFI	CTRYAG	3 cut(s)	280, 542, 924
BstSLI	GKGCMC	1 cut(s)	1473
BstV1I	GCAGC	7 cut(s)	266, 337, 556, 748, 931, 938, 1288
BstV2I	GAAGAC	5 cut(s)	144, 875, 882, 1440, 1486
BstX2I	RGATCY	3 cut(s)	1181, 1232, 1768
BstXI	CCANNNNNNTGG	1 cut(s)	2128
BstYI	RGATCY	3 cut(s)	1181, 1232, 1768
BstZ17I	GTATAC	1 cut(s)	526
BsuI	GTATCC	2 cut(s)	987, 1328
BsuRI	GGCC	3 cut(s)	660, 1308, 1406
BtsCI	GGATG	3 cut(s)	70, 739, 834
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	5 cut(s)	135, 670, 763, 1588, 2028
BveI	ACCTGC	2 cut(s)	377, 1924
Cac8I	GCNNGC	5 cut(s)	1198, 1306, 1627, 1666, 2087
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	1278
Cfr10I	RCCGGY	1 cut(s)	1304
Cfr13I	GGNCC	4 cut(s)	344, 658, 819, 914
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	1220, 1249, 1792
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	9 cut(s)	50, 207, 625, 960, 1246, 1402, 1438, 1630, 2086
CviQI	GTAC	3 cut(s)	1220, 1249, 1792
DdeI	CTNAG	9 cut(s)	564, 662, 797, 813, 1877, 1893, 1901, 2011, 2031
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	1404
Eam1104I	CTCTTC	3 cut(s)	375, 676, 2064
EarI	CTCTTC	3 cut(s)	375, 676, 2064
EciI	GGCGGA	1 cut(s)	1752
Eco130I	CCWWGG	2 cut(s)	654, 1309
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	3 cut(s)	344, 819, 914
Eco57I	CTGAAG	1 cut(s)	873
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	344, 658
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	3 cut(s)	319, 1546, 1821
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	654, 1309
EcoT22I	ATGCAT	2 cut(s)	1348, 1819
ErhI	CCWWGG	2 cut(s)	654, 1309
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	9 cut(s)	53, 210, 628, 963, 1249, 1405, 1441, 1633, 2089
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	9 cut(s)	49, 206, 624, 959, 1245, 1401, 1437, 1629, 2085
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	1870
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	9 cut(s)	126, 280, 326, 545, 762, 927, 945, 1302, 1735
FokI	GGATG	3 cut(s)	57, 746, 821
Fsp4HI	GCNGC	9 cut(s)	126, 280, 326, 545, 762, 927, 945, 1302, 1735
FspBI	CTAG	8 cut(s)	452, 846, 1179, 1298, 1310, 1373, 1979, 2115
GlaI	GCGC	1 cut(s)	1277
GluI	GCNGC	9 cut(s)	126, 280, 326, 545, 762, 927, 945, 1302, 1735
GsuI	CTGGAG	1 cut(s)	1569
HaeIII	GGCC	3 cut(s)	660, 1308, 1406
HapII	CCGG	5 cut(s)	894, 1044, 1305, 1747, 1766
HgaI	GACGC	1 cut(s)	753
HhaI	GCGC	1 cut(s)	1278
Hin1II	CATG	9 cut(s)	53, 210, 628, 963, 1249, 1405, 1441, 1633, 2089
Hin6I	GCGC	1 cut(s)	1276
HinP1I	GCGC	1 cut(s)	1276
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	7 cut(s)	140, 554, 864, 1543, 1740, 1881, 2101
HpaII	CCGG	5 cut(s)	894, 1044, 1305, 1747, 1766
HphI	GGTGA	5 cut(s)	235, 523, 908, 1103, 2110
Hpy166II	GTNNAC	2 cut(s)	526, 1243
Hpy188I	TCNGA	8 cut(s)	296, 641, 816, 853, 985, 1102, 1863, 2076
Hpy188III	TCNNGA	8 cut(s)	50, 202, 374, 731, 997, 1707, 1766, 2023
Hpy8I	GTNNAC	2 cut(s)	526, 1243
Hpy99I	CGWCG	1 cut(s)	2072
HpyAV	CCTTC	7 cut(s)	127, 357, 1141, 1431, 1435, 1813, 1841
HpyCH4III	ACNGT	5 cut(s)	109, 511, 758, 904, 1583
HpyCH4IV	ACGT	2 cut(s)	1453, 2138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	926, 1301, 1382, 1622, 2086
HpyF3I	CTNAG	9 cut(s)	564, 662, 797, 813, 1877, 1893, 1901, 2011, 2031
HpySE526I	ACGT	2 cut(s)	1453, 2138
Hsp92II	CATG	9 cut(s)	53, 210, 628, 963, 1249, 1405, 1441, 1633, 2089
HspAI	GCGC	1 cut(s)	1276
Kpn2I	TCCGGA	1 cut(s)	1765
KroI	GCCGGC	1 cut(s)	1304
KroNI	GCCGGC	1 cut(s)	1306
Ksp22I	TGATCA	1 cut(s)	1870
LguI	GCTCTTC	1 cut(s)	2064
LmnI	GCTCC	4 cut(s)	650, 1064, 1550, 2077
Lsp1109I	GCAGC	7 cut(s)	266, 337, 556, 748, 931, 938, 1288
LweI	GCATC	6 cut(s)	112, 367, 1355, 1506, 1623, 1677
MaeI	CTAG	8 cut(s)	452, 846, 1179, 1298, 1310, 1373, 1979, 2115
MaeII	ACGT	2 cut(s)	1453, 2138
MaeIII	GTNAC	9 cut(s)	10, 65, 301, 475, 592, 1204, 1886, 1946, 2131
MflI	RGATCY	3 cut(s)	1181, 1232, 1768
MhlI	GDGCHC	2 cut(s)	589, 1473
MlsI	TGGCCA	1 cut(s)	1406
MluCI	AATT	7 cut(s)	45, 238, 786, 935, 1350, 1678, 1841
MluNI	TGGCCA	1 cut(s)	1406
MlyI	GAGTC	3 cut(s)	134, 563, 858
Mox20I	TGGCCA	1 cut(s)	1406
Mph1103I	ATGCAT	2 cut(s)	1348, 1819
MroI	TCCGGA	1 cut(s)	1765
MroNI	GCCGGC	1 cut(s)	1304
MroXI	GAANNNNTTC	2 cut(s)	397, 858
MscI	TGGCCA	1 cut(s)	1406
MseI	TTAA	4 cut(s)	30, 242, 506, 1833
MslI	CAYNNNNRTG	6 cut(s)	24, 54, 264, 494, 1476, 1812
Msp20I	TGGCCA	1 cut(s)	1406
MspI	CCGG	5 cut(s)	894, 1044, 1305, 1747, 1766
MspR9I	CCNGG	3 cut(s)	321, 1548, 1823
Mva1269I	GAATGC	2 cut(s)	1198, 1817
MvaI	CCWGG	3 cut(s)	321, 1548, 1823
MwoI	GCNNNNNNNGC	5 cut(s)	926, 1301, 1382, 1622, 2086
NaeI	GCCGGC	1 cut(s)	1306
NdeI	CATATG	1 cut(s)	472
NgoMIV	GCCGGC	1 cut(s)	1304
NlaIII	CATG	9 cut(s)	53, 210, 628, 963, 1249, 1405, 1441, 1633, 2089
NlaIV	GGNNCC	3 cut(s)	171, 345, 652
NmuCI	GTSAC	3 cut(s)	475, 592, 1204
NsiI	ATGCAT	2 cut(s)	1348, 1819
NspI	RCATGY	2 cut(s)	1249, 2089
OliI	CACNNNNGTG	1 cut(s)	1476
PaeI	GCATGC	1 cut(s)	2089
PagI	TCATGA	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	1924
PciI	ACATGT	1 cut(s)	1245
PciSI	GCTCTTC	1 cut(s)	2064
PctI	GAATGC	2 cut(s)	1198, 1817
PdiI	GCCGGC	1 cut(s)	1306
PdmI	GAANNNNTTC	2 cut(s)	397, 858
PfeI	GAWTC	4 cut(s)	1543, 1740, 1881, 2101
PfoI	TCCNGGA	1 cut(s)	1546
PkrI	GCNGC	9 cut(s)	127, 281, 327, 546, 763, 928, 946, 1303, 1736
PleI	GAGTC	3 cut(s)	134, 562, 858
PpsI	GAGTC	3 cut(s)	134, 562, 858
PpuMI	RGGWCCY	1 cut(s)	344
PscI	ACATGT	1 cut(s)	1245
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	319, 1546, 1821
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	319, 1546, 1821
PspN4I	GGNNCC	3 cut(s)	171, 345, 652
PspPI	GGNCC	4 cut(s)	344, 658, 819, 914
PspPPI	RGGWCCY	1 cut(s)	344
PsrI	GAACNNNNNNTAC	2 cut(s)	382, 414
PstI	CTGCAG	3 cut(s)	284, 546, 928
PsuI	RGATCY	3 cut(s)	1181, 1232, 1768
RsaI	GTAC	3 cut(s)	1221, 1250, 1793
RsaNI	GTAC	3 cut(s)	1220, 1249, 1792
RseI	CAYNNNNRTG	6 cut(s)	24, 54, 264, 494, 1476, 1812
SapI	GCTCTTC	1 cut(s)	2064
SaqAI	TTAA	4 cut(s)	30, 242, 506, 1833
SatI	GCNGC	9 cut(s)	126, 280, 326, 545, 762, 927, 945, 1302, 1735
Sau96I	GGNCC	4 cut(s)	344, 658, 819, 914
SchI	GAGTC	3 cut(s)	134, 563, 858
ScrFI	CCNGG	3 cut(s)	321, 1548, 1823
SduI	GDGCHC	2 cut(s)	589, 1473
SfaNI	GCATC	6 cut(s)	112, 367, 1355, 1506, 1623, 1677
SfcI	CTRYAG	3 cut(s)	280, 542, 924
SinI	GGWCC	3 cut(s)	344, 819, 914
SmiI	ATTTAAAT	1 cut(s)	243
SmiMI	CAYNNNNRTG	6 cut(s)	24, 54, 264, 494, 1476, 1812
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
SphI	GCATGC	1 cut(s)	2089
Sse9I	AATT	7 cut(s)	45, 238, 786, 935, 1350, 1678, 1841
SsiI	CCGC	5 cut(s)	95, 126, 747, 1734, 1737
SspI	AATATT	1 cut(s)	1140
SspMI	CTAG	8 cut(s)	452, 846, 1179, 1298, 1310, 1373, 1979, 2115
StyD4I	CCNGG	3 cut(s)	319, 1546, 1821
StyI	CCWWGG	2 cut(s)	654, 1309
SwaI	ATTTAAAT	1 cut(s)	243
TaaI	ACNGT	5 cut(s)	109, 511, 758, 904, 1583
TaiI	ACGT	2 cut(s)	1456, 2141
TaqI	TCGA	5 cut(s)	180, 862, 1258, 1514, 1999
TasI	AATT	7 cut(s)	45, 238, 786, 935, 1350, 1678, 1841
TatI	WGTACW	1 cut(s)	1219
TauI	GCSGC	2 cut(s)	128, 1737
TfiI	GAWTC	4 cut(s)	1543, 1740, 1881, 2101
Tru1I	TTAA	4 cut(s)	30, 242, 506, 1833
Tru9I	TTAA	4 cut(s)	30, 242, 506, 1833
TscAI	CASTG	5 cut(s)	135, 670, 763, 1588, 2035
TseFI	GTSAC	3 cut(s)	475, 592, 1204
TseI	GCWGC	7 cut(s)	279, 325, 544, 761, 926, 944, 1301
Tsp45I	GTSAC	3 cut(s)	475, 592, 1204
TspGWI	ACGGA	2 cut(s)	416, 2056
TspRI	CASTG	5 cut(s)	135, 670, 763, 1588, 2035
VpaK11BI	GGWCC	3 cut(s)	344, 819, 914
XapI	RAATTY	4 cut(s)	238, 935, 1678, 1841
XceI	RCATGY	2 cut(s)	1249, 2089
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmaJI	CCTAGG	1 cut(s)	1309
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	2 cut(s)	397, 858
XspI	CTAG	8 cut(s)	452, 846, 1179, 1298, 1310, 1373, 1979, 2115
Zsp2I	ATGCAT	2 cut(s)	1348, 1819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.