Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

70621190 .. 70623793

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTGAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGCCAACACATTTTCTTCAATGCCTTTGTTAATGTTGATTTCACTGATTCCTGGCGCAACAACCTACTATCTTGCTGGACTTCACAATGGATTTGAACACTTCTTCTACTTTGCTTCTGCTCTATTTGCCTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCAAGCATCGTGCCGAATTTCCTTATGGGCATAATAGTTGGTTCTGGATTGCAAGGGATTATGTTGTTATGCGGCGGATTCTTCCGGCTACCAAATGATCTTCCGGATCTTGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTGAAGGAACAACGTTTCCGAATGATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCGACAGCATTTTGAGAGATATATGGCAGGTGGAAATGGGTTACTCTAAATGGGTTGATCTTGTTGTCTTGCTAGGAATGATAGTTCTGTATCGAGCTTTGTTCTTGGTTATCATCAAGATCACTGAGAAAAGGAAGACTATTACCTTAGCTCTTCTGCCCATGGCTCCGAAGCAAAGCATGCAAGTATTGGTGAATCCCAAGAGAGCCAGCAGAATCGTAACAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

8.82

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	3 - 148	1.2e-27	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	2 cut(s)	333, 336
AclI	AACGTT	1 cut(s)	455
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	277, 440
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	50, 114, 191, 446
AjnI	CCWGG	2 cut(s)	145, 420
AleI	CACNNNNGTG	1 cut(s)	75
AloI	GAACNNNNNNTCC	4 cut(s)	442, 474, 573, 605
AluBI	AGCT	2 cut(s)	602, 656
AluI	AGCT	2 cut(s)	602, 656
AlwI	GGATC	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	277, 440
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	39, 647
BciT130I	CCWGG	2 cut(s)	147, 422
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	147, 422
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	2 cut(s)	147, 422
BmsI	GCATC	2 cut(s)	222, 276
BpiI	GAAGAC	2 cut(s)	39, 647
Bpu10I	CCTNAGC	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	421, 666
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	147, 422
BseDI	CCNNGG	2 cut(s)	421, 666
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	346, 365
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	358, 367, 469, 562, 624
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	333, 336
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	672
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	663
BssECI	CCNNGG	2 cut(s)	421, 666
BssMI	GATC	5 cut(s)	358, 367, 469, 562, 624
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	147, 422
Bst6I	CTCTTC	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstC8I	GCNNGC	4 cut(s)	226, 265, 686, 715
BstDEI	CTNAG	5 cut(s)	476, 492, 500, 630, 652
BstDSI	CCRYGG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	5 cut(s)	361, 370, 472, 565, 627
BstMBI	GATC	5 cut(s)	358, 367, 469, 562, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 685
BstNI	CCWGG	2 cut(s)	147, 422
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	145, 420
BstSLI	GKGCMC	1 cut(s)	72
BstV2I	GAAGAC	2 cut(s)	39, 647
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	137, 627
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	4 cut(s)	226, 265, 686, 715
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	4 cut(s)	37, 229, 667, 685
CviJI	RGCY	8 cut(s)	5, 246, 349, 499, 602, 656, 671, 713
CviKI_1	RGCY	8 cut(s)	5, 246, 349, 499, 602, 656, 671, 713
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	5 cut(s)	476, 492, 500, 630, 652
DpnI	GATC	5 cut(s)	360, 369, 471, 564, 626
DpnII	GATC	5 cut(s)	358, 367, 469, 562, 624
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	145, 420
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	4 cut(s)	40, 232, 670, 688
FatI	CATG	4 cut(s)	36, 228, 666, 684
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	346, 365
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	40, 232, 670, 688
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	5 cut(s)	142, 339, 480, 700, 720
HpaII	CCGG	2 cut(s)	346, 365
HphI	GGTGA	1 cut(s)	709
Hpy188I	TCNGA	2 cut(s)	462, 675
Hpy188III	TCNNGA	3 cut(s)	306, 365, 622
HpyAV	CCTTC	4 cut(s)	30, 34, 412, 440
HpyCH4IV	ACGT	3 cut(s)	52, 455, 731
HpyCH4V	TGCA	6 cut(s)	86, 228, 263, 313, 416, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 685
HpyF3I	CTNAG	5 cut(s)	476, 492, 500, 630, 652
HpySE526I	ACGT	3 cut(s)	52, 455, 731
Hsp92II	CATG	4 cut(s)	40, 232, 670, 688
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	358, 367, 469, 562, 624
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	1 cut(s)	676
LweI	GCATC	2 cut(s)	222, 276
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	3 cut(s)	52, 455, 731
MaeIII	GTNAC	3 cut(s)	485, 545, 724
MalI	GATC	5 cut(s)	360, 369, 471, 564, 626
MboI	GATC	5 cut(s)	358, 367, 469, 562, 624
MboII	GAAGA	7 cut(s)	44, 102, 190, 334, 353, 650, 652
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	277, 440
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MroI	TCCGGA	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	125, 432
MslI	CAYNNNNRTG	2 cut(s)	75, 411
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	346, 365
MspR9I	CCNGG	2 cut(s)	147, 422
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	2 cut(s)	147, 422
MwoI	GCNNNNNNNGC	2 cut(s)	221, 685
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	5 cut(s)	358, 367, 469, 562, 624
NlaIII	CATG	4 cut(s)	40, 232, 670, 688
NlaIV	GGNNCC	1 cut(s)	672
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	688
PaqCI	CACCTGC	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	663
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	5 cut(s)	142, 339, 480, 700, 720
PkrI	GCNGC	1 cut(s)	335
Psp1406I	AACGTT	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	145, 420
PspGI	CCWGG	2 cut(s)	145, 420
PspN4I	GGNNCC	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	75, 411
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	2 cut(s)	125, 432
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	5 cut(s)	358, 367, 469, 562, 624
ScrFI	CCNGG	2 cut(s)	147, 422
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	45, 55, 161, 458, 537, 604, 653, 658, 734
SfaNI	GCATC	2 cut(s)	222, 276
SmiMI	CAYNNNNRTG	2 cut(s)	75, 411
SphI	GCATGC	1 cut(s)	688
Sse9I	AATT	2 cut(s)	277, 440
SsiI	CCGC	2 cut(s)	333, 336
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	145, 420
StyI	CCWWGG	1 cut(s)	666
TaiI	ACGT	3 cut(s)	55, 458, 734
TaqI	TCGA	1 cut(s)	598
TasI	AATT	2 cut(s)	277, 440
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	5 cut(s)	142, 339, 480, 700, 720
Tru1I	TTAA	2 cut(s)	125, 432
Tru9I	TTAA	2 cut(s)	125, 432
TscAI	CASTG	2 cut(s)	144, 634
TspDTI	ATGAA	2 cut(s)	53, 453
TspRI	CASTG	2 cut(s)	144, 634
XapI	RAATTY	2 cut(s)	277, 440
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.