pycom15g28250

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
24026689 .. 24027755
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28250.3

Sequence Viewer

Length: 873 bp
ATGTATCGCGATCTAGGCTACTACTGGCTTCGCCTTGCAATTTACATTGCCTTGTGTTTATGCGTAGGCACTATCTTTCACGACATCGGCTCCACCTTTGGCTCCATACAGGCGAGAGGTTCGATGCTTATGTTTGTTGGAGCATTCTTGACTTTCATGGCAATAGGTGGATTCCCTTCTTTTGTAGAAGACATGAAGATCTTCGGGCGAGAGAGATTGAACGGGCACTATGGTGTTTCAGCATTTGTTGTTGGAAACACATTTTCCTCCATTCCATACTTGCTCATCATCTCTCTAATTCCCGGAGCAATAGCCTACTACCTTGTCGGTCTTCAAAAGAGCTTTGATCACTTTGCCTATTTTGCATTGCTACTCTTTGTCACCATGATGTTGGTCGAGAGCCTAATGATGATTGTCGCAAGCATTGTGCCAGATTTCCTCATGGGAATTATCACCGGTGCTGGAATTCAAGGAGTAATGATGCTGAACGGAGGTTTCTTCCGACTACCCAATGACCTCCCTAAGCCCTTCTGGAGATATCCAATGTACTACATTGCATTCCACAAGTACGCAAATGAAGGATTCTACAAAAACGAGTTTGAAGGACTGACATTCCCAAACAATCAAGCAGAAGGACCGTCAACAATTAATGGCGAAGAAATTTTACGAAGCGTTTGGCAAGTGCAGATGGGATACTCCAAGTGGGTCGATCTTGCCATTTTGTTTGGAATGGTAATAGTTTACAGGCTCATGTTTCTGGGAATCATGAAGTTCACAGAAAAGGTTGTACCAATCATCAAAGCTCTCATAGTTGCTACTCCGAAGCACTCGAAACAGATCACAGAAAATCCATCCTCCATGCCCTCAGATTAA

Protein Analysis

291

Amino Acids

32.68

Weight (kDa)

7.74

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AcsI RAATTY 2 cut(s) 465, 660
AfaI GTAC 3 cut(s) 548, 569, 789
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 220, 335, 470, 602
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 2 cut(s) 342, 803
AluI AGCT 2 cut(s) 342, 803
ApoI RAATTY 2 cut(s) 465, 660
AseI ATTAAT 1 cut(s) 648
AsiGI ACCGGT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 635
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 373, 445
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 648, 680
BbsI GAAGAC 2 cut(s) 195, 323
BccI CCATC 2 cut(s) 682, 859
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 14
BfuI GTATCC 1 cut(s) 686
BglII AGATCT 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 91, 103
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 114, 471
BpiI GAAGAC 2 cut(s) 195, 323
BpmI CTGGAG 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 3 cut(s) 45, 365, 552
BseGI GGATG 1 cut(s) 851
BseMI GCAATG 3 cut(s) 45, 365, 552
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 455
BsiSI CCGG 2 cut(s) 303, 456
BsmI GAATGC 2 cut(s) 143, 557
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 10, 198, 346, 709, 837
Bsp68I TCGCGA 1 cut(s) 9
BspFNI CGCG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 2 cut(s) 91, 103
BsrDI GCAATG 3 cut(s) 45, 365, 552
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 455
BssMI GATC 5 cut(s) 10, 198, 346, 709, 837
Bst4CI ACNGT 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 522, 865
BstF5I GGATG 1 cut(s) 851
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 5 cut(s) 13, 201, 349, 712, 840
BstMBI GATC 5 cut(s) 10, 198, 346, 709, 837
BstMWI GCNNNNNNNGC 2 cut(s) 15, 362
BstSCI CCNGG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 9
BstV2I GAAGAC 2 cut(s) 195, 323
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 198
BsuI GTATCC 1 cut(s) 686
BtsCI GGATG 1 cut(s) 851
BtuMI TCGCGA 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 421
CciI TCATGA 1 cut(s) 765
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 547, 568, 788
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 7 cut(s) 157, 193, 385, 442, 751, 766, 859
CviQI GTAC 3 cut(s) 547, 568, 788
DdeI CTNAG 2 cut(s) 522, 865
DpnI GATC 5 cut(s) 12, 200, 348, 711, 839
DpnII GATC 5 cut(s) 10, 198, 346, 709, 837
Eco32I GATATC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 465
EcoRV GATATC 1 cut(s) 539
FaeI CATG 7 cut(s) 160, 196, 388, 445, 754, 769, 862
FatI CATG 7 cut(s) 156, 192, 384, 441, 750, 765, 858
FbaI TGATCA 1 cut(s) 346
FokI GGATG 1 cut(s) 838
FspBI CTAG 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 553
HapII CCGG 2 cut(s) 303, 456
Hin1II CATG 7 cut(s) 160, 196, 388, 445, 754, 769, 862
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HinfI GANTC 3 cut(s) 171, 582, 762
HpaII CCGG 2 cut(s) 303, 456
HphI GGTGA 2 cut(s) 373, 445
Hpy166II GTNNAC 3 cut(s) 642, 742, 774
Hpy188I TCNGA 3 cut(s) 503, 822, 868
Hpy188III TCNNGA 6 cut(s) 8, 80, 148, 397, 532, 766
Hpy8I GTNNAC 3 cut(s) 642, 742, 774
HpyAV CCTTC 5 cut(s) 186, 538, 572, 596, 626
HpyCH4III ACNGT 1 cut(s) 639
HpyCH4V TGCA 4 cut(s) 38, 365, 557, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 362
HpyF3I CTNAG 2 cut(s) 522, 865
Hsp92II CATG 7 cut(s) 160, 196, 388, 445, 754, 769, 862
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 5 cut(s) 10, 198, 346, 709, 837
LmnI GCTCC 4 cut(s) 95, 107, 140, 305
LpnPI CCDG 9 cut(s) 10, 95, 316, 444, 447, 469, 517, 730, 743
LweI GCATC 2 cut(s) 114, 471
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 379
MalI GATC 5 cut(s) 12, 200, 348, 711, 839
MboI GATC 5 cut(s) 10, 198, 346, 709, 837
MboII GAAGA 6 cut(s) 193, 200, 208, 323, 490, 668
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 6 cut(s) 39, 297, 447, 465, 645, 660
MmeI TCCRAC 3 cut(s) 118, 232, 526
MnlI CCTC 6 cut(s) 110, 277, 449, 485, 527, 865
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 648, 871
MslI CAYNNNNRTG 2 cut(s) 231, 386
MspI CCGG 2 cut(s) 303, 456
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 143, 557
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 15, 362
NciI CCSGG 1 cut(s) 303
NdeII GATC 5 cut(s) 10, 198, 346, 709, 837
NlaIII CATG 7 cut(s) 160, 196, 388, 445, 754, 769, 862
NlaIV GGNNCC 2 cut(s) 91, 103
NmuCI GTSAC 1 cut(s) 379
NruI TCGCGA 1 cut(s) 9
OliI CACNNNNGTG 1 cut(s) 231
PagI TCATGA 1 cut(s) 765
PctI GAATGC 2 cut(s) 143, 557
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 171, 582, 762
PfoI TCCNGGA 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 91, 103
PspPI GGNCC 1 cut(s) 635
PsuI RGATCY 1 cut(s) 198
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 3 cut(s) 548, 569, 789
RsaNI GTAC 3 cut(s) 547, 568, 788
RseI CAYNNNNRTG 2 cut(s) 231, 386
SaqAI TTAA 2 cut(s) 648, 871
Sau3AI GATC 5 cut(s) 10, 198, 346, 709, 837
Sau96I GGNCC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 228
SetI ASST 9 cut(s) 98, 121, 169, 324, 344, 496, 519, 786, 805
SfaNI GCATC 2 cut(s) 114, 471
SgrAI CRCCGGYG 1 cut(s) 455
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 2 cut(s) 231, 386
Sse9I AATT 6 cut(s) 39, 297, 447, 465, 645, 660
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 639
TaqI TCGA 4 cut(s) 122, 396, 708, 830
TaqII GACCGA 1 cut(s) 317
TasI AATT 6 cut(s) 39, 297, 447, 465, 645, 660
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 3 cut(s) 171, 582, 762
Tru1I TTAA 2 cut(s) 648, 871
Tru9I TTAA 2 cut(s) 648, 871
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 145, 209, 591, 782
TspGWI ACGGA 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 635
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 2 cut(s) 465, 660
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.