Rh5DG200200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
22280603 .. 22282846
2244 bp
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UTR
Exon/CDS
Intron
Rh5DG200200.1

Sequence Viewer

Length: 204 bp
ATGAATAGTTGCGTCATTGAGTCGCCGGAGGCAGCATCGAATCGCTGGATTGATTTGACTGGTAGTTCTAGTTTTATGTTGCACCGGTTTGGAGAGGCCACTGATGCTGTGGCGAGGAAGGCCACTGGAGGTCTGGTCGGCGGCAGCGGCATCAATGGCTGCGTGGCAGAGAATGGCCTATTCATGTATTTAAATCAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.02

Weight (kDa)

5.0

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 141, 147
AcsI RAATTY 1 cut(s) 198
AgeI ACCGGT 1 cut(s) 84
AoxI GGCC 3 cut(s) 96, 120, 175
ApeKI GCWGC 3 cut(s) 32, 144, 159
ApoI RAATTY 1 cut(s) 198
AsiGI ACCGGT 1 cut(s) 84
BbvI GCAGC 3 cut(s) 44, 146, 156
BfaI CTAG 1 cut(s) 69
BisI GCNGC 5 cut(s) 33, 142, 145, 148, 160
BlsI GCNGC 5 cut(s) 34, 143, 146, 149, 161
BmsI GCATC 3 cut(s) 44, 94, 159
BpmI CTGGAG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 64, 130
BseNI ACTGG 2 cut(s) 64, 130
BseXI GCAGC 3 cut(s) 44, 146, 156
BshFI GGCC 3 cut(s) 98, 122, 177
BshTI ACCGGT 1 cut(s) 84
BsiSI CCGG 2 cut(s) 26, 85
BsnI GGCC 3 cut(s) 98, 122, 177
BspACI CCGC 2 cut(s) 141, 147
BspANI GGCC 3 cut(s) 98, 122, 177
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 64, 130
BssAI RCCGGY 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 104, 119, 147, 156
BstV1I GCAGC 3 cut(s) 44, 146, 156
BsuRI GGCC 3 cut(s) 98, 122, 177
BtsIMutI CAGTG 2 cut(s) 99, 123
Cfr10I RCCGGY 1 cut(s) 84
CspAI ACCGGT 1 cut(s) 84
CviAII CATG 1 cut(s) 184
CviJI RGCY 4 cut(s) 98, 122, 159, 177
CviKI_1 RGCY 4 cut(s) 98, 122, 159, 177
DraI TTTAAA 1 cut(s) 192
FaeI CATG 1 cut(s) 187
FaiI YATR 2 cut(s) 77, 185
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 5 cut(s) 33, 142, 145, 148, 160
Fsp4HI GCNGC 5 cut(s) 33, 142, 145, 148, 160
FspBI CTAG 1 cut(s) 69
GluI GCNGC 5 cut(s) 33, 142, 145, 148, 160
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 3 cut(s) 98, 122, 177
HapII CCGG 2 cut(s) 26, 85
Hin1II CATG 1 cut(s) 187
HinfI GANTC 2 cut(s) 20, 40
HpaII CCGG 2 cut(s) 26, 85
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 119, 147, 156
Hsp92II CATG 1 cut(s) 187
LpnPI CCDG 6 cut(s) 31, 39, 45, 98, 111, 119
Lsp1109I GCAGC 3 cut(s) 44, 146, 156
LweI GCATC 3 cut(s) 44, 94, 159
MaeI CTAG 1 cut(s) 69
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 4 cut(s) 22, 88, 108, 122
MseI TTAA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 2 cut(s) 26, 85
MwoI GCNNNNNNNGC 4 cut(s) 104, 119, 147, 156
NlaIII CATG 1 cut(s) 187
PfeI GAWTC 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 84
PkrI GCNGC 5 cut(s) 34, 143, 146, 149, 161
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 5 cut(s) 33, 142, 145, 148, 160
SchI GAGTC 1 cut(s) 29
SetI ASST 1 cut(s) 133
SfaNI GCATC 3 cut(s) 44, 94, 159
SmiI ATTTAAAT 1 cut(s) 192
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 141, 147
SspMI CTAG 1 cut(s) 69
SwaI ATTTAAAT 1 cut(s) 192
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 198
TauI GCSGC 2 cut(s) 144, 150
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 2 cut(s) 106, 130
TseI GCWGC 3 cut(s) 32, 144, 159
TspDTI ATGAA 2 cut(s) 17, 172
TspRI CASTG 2 cut(s) 106, 130
XapI RAATTY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 2 cut(s) 106, 130
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.